Wall clock time and date at job start Tue Mar 31 2020 06:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34230 * 116.99798 * 2 1 4 4 O 1.20823 * 120.00027 * 0.02562 * 3 2 1 5 5 C 1.50701 * 119.99473 * 179.97438 * 3 2 1 6 6 N 1.46502 * 109.46641 * 184.39030 * 5 3 2 7 7 C 1.36929 * 120.00280 * 275.33360 * 6 5 3 8 8 H 1.08000 * 120.00257 * 326.30926 * 7 6 5 9 9 C 1.38812 * 120.00045 * 146.31412 * 7 6 5 10 10 N 1.31626 * 120.00196 * 159.10788 * 9 7 6 11 11 Si 1.86798 * 119.99905 * 339.10873 * 9 7 6 12 12 H 1.48503 * 109.47122 * 92.66911 * 11 9 7 13 13 H 1.48506 * 109.47247 * 212.66736 * 11 9 7 14 14 H 1.48497 * 109.47245 * 332.66985 * 11 9 7 15 15 C 1.46499 * 119.99601 * 95.33523 * 6 5 3 16 16 C 1.53002 * 109.47040 * 89.99714 * 15 6 5 17 17 H 1.08997 * 109.47222 * 55.00211 * 16 15 6 18 18 C 1.53005 * 109.47332 * 174.99629 * 16 15 6 19 19 C 1.52993 * 109.47352 * 180.02562 * 18 16 15 20 20 C 1.53007 * 109.47190 * 299.99879 * 19 18 16 21 21 C 1.53008 * 109.46707 * 60.00165 * 20 19 18 22 22 F 1.39898 * 109.47138 * 60.00039 * 21 20 19 23 23 F 1.39897 * 109.46880 * 180.02562 * 21 20 19 24 24 C 1.52997 * 109.47278 * 294.99975 * 16 15 6 25 25 H 1.09002 * 109.47401 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47313 * 299.99783 * 1 2 3 27 27 H 1.09005 * 109.47045 * 59.99975 * 1 2 3 28 28 H 1.08999 * 109.47025 * 64.39750 * 5 3 2 29 29 H 1.08991 * 109.47513 * 304.39176 * 5 3 2 30 30 H 0.96998 * 119.99632 * 179.97438 * 10 9 7 31 31 H 1.08995 * 109.47438 * 330.00031 * 15 6 5 32 32 H 1.08997 * 109.47259 * 209.99696 * 15 6 5 33 33 H 1.09007 * 109.46468 * 60.00115 * 18 16 15 34 34 H 1.08999 * 109.47449 * 300.00654 * 18 16 15 35 35 H 1.09004 * 109.47092 * 180.02562 * 19 18 16 36 36 H 1.08998 * 109.47217 * 59.99951 * 19 18 16 37 37 H 1.08994 * 109.47204 * 179.97438 * 20 19 18 38 38 H 1.08997 * 109.47466 * 300.00542 * 20 19 18 39 39 H 1.08998 * 109.47195 * 299.99471 * 24 16 15 40 40 H 1.09004 * 109.47023 * 60.00027 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 7 3.9818 2.6757 0.1062 7 6 4.0661 3.4516 -1.0189 8 1 4.3673 3.0107 -1.9577 9 6 3.7645 4.8049 -0.9529 10 7 4.2194 5.6264 -1.8753 11 14 2.7130 5.4604 0.4450 12 1 3.5905 5.9136 1.5540 13 1 1.8996 6.6037 -0.0414 14 1 1.8131 4.3850 0.9338 15 6 4.3073 3.2464 1.4156 16 6 5.7973 3.0494 1.7018 17 1 6.3830 3.4724 0.8856 18 6 6.1629 3.7535 3.0100 19 6 7.6530 3.5571 3.2958 20 6 7.9560 2.0624 3.4192 21 6 7.5905 1.3584 2.1108 22 9 8.3418 1.9016 1.0632 23 9 7.8670 -0.0084 2.2238 24 6 6.0997 1.5547 1.8252 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 3.9527 0.8501 -0.9259 29 1 3.9592 0.7144 0.8488 30 1 4.0083 6.5720 -1.8293 31 1 3.7202 2.7464 2.1860 32 1 4.0749 4.3113 1.4157 33 1 5.5772 3.3305 3.8262 34 1 5.9474 4.8184 2.9221 35 1 7.9134 4.0584 4.2281 36 1 8.2384 3.9803 2.4796 37 1 9.0177 1.9225 3.6223 38 1 7.3706 1.6391 4.2354 39 1 5.5141 1.1317 2.6414 40 1 5.8393 1.0531 0.8931 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338303435.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:54 Heat of formation + Delta-G solvation = -190.145811 kcal Electronic energy + Delta-G solvation = -25203.906410 eV Core-core repulsion = 21268.275579 eV Total energy + Delta-G solvation = -3935.630832 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.143 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.85118 -47.85720 -41.20204 -39.49702 -37.54345 -36.66260 -33.90771 -32.44786 -31.04528 -29.98069 -27.91742 -27.24232 -24.35834 -23.51580 -22.66849 -21.54930 -20.81979 -18.89523 -18.50374 -18.11216 -17.89431 -17.37067 -17.29422 -17.05759 -16.87619 -16.21617 -15.60686 -15.07376 -14.97383 -14.73664 -14.65457 -14.30091 -14.21499 -14.11438 -13.95225 -13.62574 -13.37193 -13.27002 -13.09885 -12.86256 -12.67418 -12.50757 -12.31318 -12.08472 -11.91006 -11.76512 -11.62237 -11.56841 -11.40597 -11.03665 -11.00990 -10.58092 -8.99779 -8.21303 -5.60319 1.23738 1.41637 1.48210 1.65075 1.97171 2.42698 2.91561 3.03360 3.23785 3.30147 3.46426 3.53350 4.01812 4.06613 4.18352 4.28311 4.32246 4.34192 4.39180 4.39828 4.44593 4.54439 4.58543 4.66914 4.72350 4.73759 4.85429 4.98045 4.99569 5.05165 5.17378 5.26909 5.39668 5.55575 5.58360 5.87498 6.09114 6.82520 7.09772 7.55433 7.88213 8.97171 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.013661 B = 0.006934 C = 0.005353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.132847 B = 4036.830816 C = 5229.370155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.372 6.372 3 C 0.419 3.581 4 O -0.530 6.530 5 C 0.149 3.851 6 N -0.585 5.585 7 C -0.248 4.248 8 H 0.052 0.948 9 C -0.013 4.013 10 N -0.947 5.947 11 Si 0.934 3.066 12 H -0.267 1.267 13 H -0.327 1.327 14 H -0.247 1.247 15 C 0.136 3.864 16 C -0.094 4.094 17 H 0.050 0.950 18 C -0.119 4.119 19 C -0.112 4.112 20 C -0.147 4.147 21 C 0.278 3.722 22 F -0.219 7.219 23 F -0.212 7.212 24 C -0.146 4.146 25 H 0.133 0.867 26 H 0.053 0.947 27 H 0.045 0.955 28 H 0.100 0.900 29 H 0.128 0.872 30 H 0.260 0.740 31 H 0.070 0.930 32 H 0.036 0.964 33 H 0.092 0.908 34 H 0.055 0.945 35 H 0.101 0.899 36 H 0.052 0.948 37 H 0.093 0.907 38 H 0.119 0.881 39 H 0.117 0.883 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.832 -11.636 14.622 18.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.288 6.288 3 C 0.260 3.740 4 O -0.418 6.418 5 C 0.020 3.980 6 N -0.305 5.305 7 C -0.378 4.378 8 H 0.070 0.930 9 C -0.209 4.209 10 N -0.591 5.591 11 Si 0.765 3.235 12 H -0.195 1.195 13 H -0.257 1.257 14 H -0.170 1.170 15 C 0.012 3.988 16 C -0.115 4.115 17 H 0.069 0.931 18 C -0.157 4.157 19 C -0.150 4.150 20 C -0.185 4.185 21 C 0.243 3.757 22 F -0.200 7.200 23 F -0.193 7.193 24 C -0.184 4.184 25 H 0.151 0.849 26 H 0.072 0.928 27 H 0.064 0.936 28 H 0.118 0.882 29 H 0.146 0.854 30 H 0.069 0.931 31 H 0.089 0.911 32 H 0.053 0.947 33 H 0.110 0.890 34 H 0.074 0.926 35 H 0.120 0.880 36 H 0.071 0.929 37 H 0.112 0.888 38 H 0.137 0.863 39 H 0.135 0.865 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 2.634 -11.223 14.539 18.554 hybrid contribution -0.897 0.993 -0.545 1.445 sum 1.737 -10.230 13.994 17.421 Atomic orbital electron populations 1.23371 0.76647 1.05027 1.01442 1.86571 1.23817 1.34072 1.84339 1.26768 0.95084 0.80906 0.71260 1.90662 1.67748 1.37708 1.45670 1.21236 0.84058 0.87437 1.05257 1.44156 1.74031 1.08505 1.03784 1.18609 1.38768 0.90605 0.89797 0.93032 1.25887 0.98600 0.97146 0.99298 1.69960 1.46716 1.03720 1.38744 0.86124 0.80288 0.77022 0.80034 1.19480 1.25738 1.17037 1.21373 0.94202 0.97339 0.85851 1.21471 0.97454 0.94375 0.98211 0.93142 1.21664 0.97004 1.00430 0.96644 1.21469 0.95714 0.94513 1.03298 1.22522 1.04828 0.96721 0.94416 1.21539 0.91813 0.74917 0.87463 1.92970 1.79203 1.85964 1.61850 1.92966 1.95112 1.34662 1.96516 1.22603 0.92216 0.98308 1.05241 0.84906 0.92811 0.93568 0.88182 0.85401 0.93062 0.91125 0.94665 0.88993 0.92582 0.88022 0.92916 0.88818 0.86296 0.86472 0.90037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 10.56 113.37 1.20 1.92 16 2 O -0.37 -11.59 10.57 -51.42 -0.54 -12.14 16 3 C 0.42 16.01 8.00 71.24 0.57 16.58 16 4 O -0.53 -25.03 14.54 21.97 0.32 -24.71 16 5 C 0.15 5.24 5.17 85.63 0.44 5.68 16 6 N -0.58 -25.63 1.55 -706.37 -1.10 -26.72 16 7 C -0.25 -13.76 9.77 84.03 0.82 -12.94 16 8 H 0.05 3.15 8.06 -2.91 -0.02 3.13 16 9 C -0.01 -0.75 5.35 84.86 0.45 -0.30 16 10 N -0.95 -60.07 13.97 21.65 0.30 -59.77 16 11 Si 0.93 48.08 24.68 68.60 1.69 49.78 16 12 H -0.27 -12.52 6.58 99.48 0.65 -11.87 16 13 H -0.33 -17.69 7.11 99.48 0.71 -16.98 16 14 H -0.25 -12.73 5.81 99.48 0.58 -12.15 16 15 C 0.14 5.23 3.97 86.38 0.34 5.57 16 16 C -0.09 -3.04 2.27 -10.79 -0.02 -3.06 16 17 H 0.05 2.06 7.80 -2.39 -0.02 2.04 16 18 C -0.12 -2.96 5.20 30.59 0.16 -2.80 16 19 C -0.11 -2.30 5.80 30.59 0.18 -2.12 16 20 C -0.15 -2.73 5.45 30.60 0.17 -2.56 16 21 C 0.28 7.18 2.10 30.61 0.06 7.25 16 22 F -0.22 -7.23 16.02 44.97 0.72 -6.51 16 23 F -0.21 -5.57 17.06 44.97 0.77 -4.81 16 24 C -0.15 -3.82 3.72 30.61 0.11 -3.71 16 25 H 0.13 2.15 8.14 -2.39 -0.02 2.13 16 26 H 0.05 1.35 8.13 -2.39 -0.02 1.33 16 27 H 0.05 1.25 8.13 -2.38 -0.02 1.23 16 28 H 0.10 3.42 8.08 -2.39 -0.02 3.40 16 29 H 0.13 3.40 6.23 -2.39 -0.01 3.38 16 30 H 0.26 15.84 8.31 -92.71 -0.77 15.07 16 31 H 0.07 2.30 8.07 -2.39 -0.02 2.28 16 32 H 0.04 1.57 2.55 -2.39 -0.01 1.56 16 33 H 0.09 1.75 8.14 -2.38 -0.02 1.74 16 34 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.10 1.52 8.14 -2.38 -0.02 1.50 16 36 H 0.05 1.31 7.80 -2.39 -0.02 1.29 16 37 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.12 2.29 8.14 -2.39 -0.02 2.27 16 40 H 0.08 2.36 5.99 -2.38 -0.01 2.34 16 Total: -1.00 -74.56 321.41 7.51 -67.06 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: 0.86 Total: 8.31 kcal Atomic # 6 Polarization: 5.02 SS G_CDS: 4.48 Total: 9.51 kcal Atomic # 7 Polarization: -85.70 SS G_CDS: -0.79 Total: -86.50 kcal Atomic # 8 Polarization: -36.62 SS G_CDS: -0.22 Total: -36.85 kcal Atomic # 9 Polarization: -12.80 SS G_CDS: 1.49 Total: -11.31 kcal Atomic # 14 Polarization: 48.08 SS G_CDS: 1.69 Total: 49.78 kcal Total: -74.56 7.51 -67.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338303435.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.090 kcal (2) G-P(sol) polarization free energy of solvation -74.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds