Wall clock time and date at job start Tue Mar 31 2020 06:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35732 * 117.00315 * 2 1 4 4 C 1.39449 * 120.81217 * 180.02562 * 3 2 1 5 5 N 1.31955 * 119.08256 * 180.02562 * 4 3 2 6 6 C 1.32542 * 120.83931 * 359.97438 * 5 4 3 7 7 C 1.48288 * 119.11238 * 179.72624 * 6 5 4 8 8 O 1.21506 * 119.99954 * 352.58484 * 7 6 5 9 9 N 1.34774 * 119.99829 * 172.58810 * 7 6 5 10 10 C 1.46497 * 120.00140 * 3.04526 * 9 7 6 11 11 C 1.50698 * 109.47328 * 82.55077 * 10 9 7 12 12 H 1.07999 * 119.99917 * 359.97438 * 11 10 9 13 13 C 1.37878 * 120.00149 * 180.02562 * 11 10 9 14 14 N 1.31514 * 120.00061 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 119.99757 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47457 * 59.99948 * 15 13 11 17 17 H 1.48506 * 109.46824 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47324 * 299.99582 * 15 13 11 19 19 C 1.46504 * 119.99651 * 183.04383 * 9 7 6 20 20 C 1.53001 * 109.47044 * 85.10222 * 19 9 7 21 21 C 1.52994 * 117.50166 * 243.74534 * 20 19 9 22 22 C 1.53002 * 117.50128 * 175.08109 * 20 19 9 23 23 N 1.32535 * 121.77303 * 0.02562 * 6 5 4 24 24 C 1.31957 * 120.84115 * 359.97438 * 23 6 5 25 25 H 1.08997 * 109.47053 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46874 * 299.99076 * 1 2 3 27 27 H 1.08993 * 109.47417 * 59.99885 * 1 2 3 28 28 H 1.08001 * 120.45763 * 359.97438 * 4 3 2 29 29 H 1.09003 * 109.47308 * 202.54562 * 10 9 7 30 30 H 1.08994 * 109.47405 * 322.54678 * 10 9 7 31 31 H 0.96997 * 120.00117 * 180.02562 * 14 13 11 32 32 H 1.09001 * 109.47038 * 205.09697 * 19 9 7 33 33 H 1.08991 * 109.47369 * 325.10341 * 19 9 7 34 34 H 1.09001 * 115.54828 * 29.41767 * 20 19 9 35 35 H 1.09002 * 117.49894 * 359.97438 * 21 20 19 36 36 H 1.09001 * 117.50067 * 145.02241 * 21 20 19 37 37 H 1.08998 * 117.49879 * 214.97864 * 22 20 19 38 38 H 1.08999 * 117.49395 * 0.02562 * 22 20 19 39 39 H 1.07996 * 120.46047 * 179.97438 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2093 0.0000 4 6 3.4367 1.3020 -0.0005 5 7 4.0000 2.4952 0.0000 6 6 3.2610 3.5955 0.0005 7 6 3.9342 4.9167 0.0073 8 8 5.1393 4.9839 0.1481 9 7 3.2095 6.0431 -0.1426 10 6 1.7501 5.9668 -0.2453 11 6 1.1533 5.8763 1.1355 12 1 1.7968 5.8752 2.0028 13 6 -0.2141 5.7938 1.2915 14 7 -0.9977 5.7946 0.2353 15 14 -0.9537 5.6809 3.0032 16 1 -0.5752 6.8845 3.7864 17 1 -2.4330 5.6038 2.8990 18 1 -0.4409 4.4653 3.6848 19 6 3.8811 7.3437 -0.2028 20 6 4.3309 7.6194 -1.6390 21 6 5.8342 7.7338 -1.8989 22 6 4.9536 8.9854 -1.9344 23 7 1.9366 3.5466 0.0010 24 6 1.3023 2.3895 0.0005 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5137 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 4.0447 0.4094 -0.0005 29 1 1.3739 6.8591 -0.7458 30 1 1.4719 5.0834 -0.8200 31 1 -1.9597 5.7370 0.3451 32 1 3.1911 8.1241 0.1179 33 1 4.7504 7.3345 0.4546 34 1 3.7184 7.1664 -2.4186 35 1 6.5030 7.6130 -1.0466 36 1 6.2108 7.3564 -2.8496 37 1 4.7512 9.4307 -2.9085 38 1 5.0433 9.6874 -1.1055 39 1 0.2229 2.3568 0.0014 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339928942.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:20 Heat of formation + Delta-G solvation = 33.167916 kcal Electronic energy + Delta-G solvation = -23639.214563 eV Core-core repulsion = 20163.956527 eV Total energy + Delta-G solvation = -3475.258035 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.00545 -39.13960 -38.10051 -36.75050 -34.89792 -33.20178 -32.37755 -30.92827 -28.12427 -27.48686 -26.30965 -24.33190 -23.60639 -22.75587 -22.03508 -20.68367 -19.34707 -18.01755 -17.77654 -16.91707 -16.38903 -15.94059 -15.79216 -14.92712 -14.71198 -14.60652 -14.29830 -14.12880 -13.96532 -13.37611 -13.11997 -12.94225 -12.43007 -12.18362 -11.92811 -11.53202 -11.49263 -11.27179 -11.22338 -10.98715 -10.91435 -10.59568 -10.34741 -10.23360 -10.00025 -9.64297 -9.56894 -9.21907 -8.57625 -8.47103 -8.14985 -7.64882 -6.05702 -4.04075 0.98037 1.45131 3.09292 3.24821 3.29357 3.30110 3.36009 3.56234 4.14068 4.35694 4.40103 4.53077 4.60442 4.77820 4.94319 5.12382 5.12795 5.25463 5.27713 5.30583 5.34614 5.43027 5.51387 5.79507 5.87962 5.94337 6.10983 6.18007 6.21706 6.35835 6.40623 6.60231 6.86739 7.00134 7.37603 7.52895 7.72645 7.87797 8.23906 8.27039 8.45191 8.91590 9.02421 9.54802 11.02020 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.011455 B = 0.007010 C = 0.004784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2443.769547 B = 3993.105284 C = 5851.603340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.306 6.306 3 C 0.030 3.970 4 C 0.103 3.897 5 N -0.439 5.439 6 C 0.235 3.765 7 C 0.586 3.414 8 O -0.542 6.542 9 N -0.574 5.574 10 C 0.228 3.772 11 C -0.495 4.495 12 H 0.051 0.949 13 C 0.068 3.932 14 N -0.890 5.890 15 Si 0.883 3.117 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.281 1.281 19 C 0.152 3.848 20 C -0.161 4.161 21 C -0.173 4.173 22 C -0.180 4.180 23 N -0.373 5.373 24 C 0.059 3.941 25 H 0.102 0.898 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.173 0.827 29 H 0.028 0.972 30 H 0.079 0.921 31 H 0.260 0.740 32 H 0.086 0.914 33 H 0.074 0.926 34 H 0.103 0.897 35 H 0.095 0.905 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.093 0.907 39 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.688 -5.618 -3.526 7.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.217 6.217 3 C -0.021 4.021 4 C -0.067 4.067 5 N -0.154 5.154 6 C -0.032 4.032 7 C 0.370 3.630 8 O -0.419 6.419 9 N -0.304 5.304 10 C 0.109 3.891 11 C -0.534 4.534 12 H 0.069 0.931 13 C -0.133 4.133 14 N -0.530 5.530 15 Si 0.711 3.289 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.206 1.206 19 C 0.028 3.972 20 C -0.181 4.181 21 C -0.210 4.210 22 C -0.218 4.218 23 N -0.089 5.089 24 C -0.110 4.110 25 H 0.121 0.879 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.190 0.810 29 H 0.046 0.954 30 H 0.096 0.904 31 H 0.070 0.930 32 H 0.104 0.896 33 H 0.092 0.908 34 H 0.121 0.879 35 H 0.114 0.886 36 H 0.105 0.895 37 H 0.108 0.892 38 H 0.111 0.889 39 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 3.648 -4.867 -3.500 7.017 hybrid contribution -1.530 -0.905 1.050 2.064 sum 2.118 -5.772 -2.450 6.618 Atomic orbital electron populations 1.23177 0.77786 1.04210 1.02270 1.85998 1.21879 1.25627 1.88172 1.21319 0.95287 0.86793 0.98732 1.22607 0.89065 0.96114 0.98895 1.68182 1.40172 0.97657 1.09367 1.22859 0.86830 0.93798 0.99753 1.17090 0.85519 0.82277 0.78093 1.90693 1.13645 1.86465 1.51090 1.48108 1.10369 1.03968 1.67951 1.20104 0.71465 0.99288 0.98213 1.21256 0.91439 1.48633 0.92099 0.93088 1.24747 0.96853 0.95614 0.96118 1.69919 1.03982 1.50806 1.28302 0.86808 0.77956 0.78712 0.85388 1.20286 1.21267 1.20646 1.20928 0.97650 0.85207 0.93397 1.22782 0.96004 0.99948 0.99324 1.22966 0.93761 1.01362 1.02884 1.22922 1.05227 0.91059 1.02572 1.69504 1.08583 1.25606 1.05183 1.23780 1.01740 0.86743 0.98699 0.87925 0.92050 0.92011 0.80971 0.95354 0.90418 0.93008 0.89555 0.90816 0.87880 0.88631 0.89508 0.89180 0.88885 0.81171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.84 101.05 0.99 1.20 16 2 O -0.31 -4.02 10.51 -18.90 -0.20 -4.22 16 3 C 0.03 0.47 6.75 -38.68 -0.26 0.20 16 4 C 0.10 1.66 11.28 -17.05 -0.19 1.47 16 5 N -0.44 -8.82 10.12 -11.03 -0.11 -8.93 16 6 C 0.24 5.16 7.47 -157.05 -1.17 3.99 16 7 C 0.59 13.49 7.59 -12.13 -0.09 13.40 16 8 O -0.54 -13.11 16.51 5.36 0.09 -13.03 16 9 N -0.57 -12.59 2.49 -176.01 -0.44 -13.02 16 10 C 0.23 5.47 4.75 -5.20 -0.02 5.45 16 11 C -0.49 -12.80 7.87 -34.44 -0.27 -13.07 16 12 H 0.05 1.38 7.81 -52.49 -0.41 0.97 16 13 C 0.07 1.76 5.46 -17.82 -0.10 1.67 16 14 N -0.89 -23.61 13.29 55.43 0.74 -22.87 16 15 Si 0.88 20.42 29.54 -169.99 -5.02 15.40 16 16 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 17 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 18 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 19 C 0.15 2.84 5.63 -4.04 -0.02 2.82 16 20 C -0.16 -2.65 5.98 -90.62 -0.54 -3.19 16 21 C -0.17 -2.55 10.18 -26.69 -0.27 -2.82 16 22 C -0.18 -2.40 10.26 -26.69 -0.27 -2.67 16 23 N -0.37 -8.04 4.92 -11.03 -0.05 -8.09 16 24 C 0.06 1.05 10.31 -17.05 -0.18 0.88 16 25 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 26 H 0.06 0.61 7.71 -51.93 -0.40 0.21 16 27 H 0.06 0.58 7.71 -51.93 -0.40 0.18 16 28 H 0.17 2.15 8.06 -52.49 -0.42 1.73 16 29 H 0.03 0.71 8.01 -51.93 -0.42 0.29 16 30 H 0.08 1.95 5.29 -52.16 -0.28 1.67 16 31 H 0.26 6.63 8.31 -40.82 -0.34 6.29 16 32 H 0.09 1.56 8.03 -51.93 -0.42 1.15 16 33 H 0.07 1.39 7.26 -51.93 -0.38 1.01 16 34 H 0.10 1.78 8.14 -51.93 -0.42 1.36 16 35 H 0.10 1.45 8.03 -51.93 -0.42 1.03 16 36 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 37 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.17 2.79 6.47 -52.49 -0.34 2.45 16 LS Contribution 335.44 15.07 5.06 5.06 Total: -1.00 -30.47 335.44 -7.47 -37.94 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -5.13 Total: 2.44 kcal Atomic # 6 Polarization: 11.71 SS G_CDS: -2.40 Total: 9.31 kcal Atomic # 7 Polarization: -53.05 SS G_CDS: 0.13 Total: -52.91 kcal Atomic # 8 Polarization: -17.13 SS G_CDS: -0.11 Total: -17.24 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.47 -7.47 -37.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339928942.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.112 kcal (2) G-P(sol) polarization free energy of solvation -30.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds