Wall clock time and date at job start Tue Mar 31 2020 06:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35732 * 117.00315 * 2 1 4 4 C 1.39449 * 120.81217 * 180.02562 * 3 2 1 5 5 N 1.31955 * 119.08256 * 180.02562 * 4 3 2 6 6 C 1.32542 * 120.83931 * 359.97438 * 5 4 3 7 7 C 1.48288 * 119.11238 * 179.72624 * 6 5 4 8 8 O 1.21506 * 119.99954 * 352.58484 * 7 6 5 9 9 N 1.34774 * 119.99829 * 172.58810 * 7 6 5 10 10 C 1.46497 * 120.00140 * 3.04526 * 9 7 6 11 11 C 1.50698 * 109.47328 * 82.55077 * 10 9 7 12 12 H 1.07999 * 119.99917 * 359.97438 * 11 10 9 13 13 C 1.37878 * 120.00149 * 180.02562 * 11 10 9 14 14 N 1.31514 * 120.00061 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 119.99757 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47457 * 59.99948 * 15 13 11 17 17 H 1.48506 * 109.46824 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47324 * 299.99582 * 15 13 11 19 19 C 1.46504 * 119.99651 * 183.04383 * 9 7 6 20 20 C 1.53001 * 109.47044 * 85.10222 * 19 9 7 21 21 C 1.52994 * 117.50166 * 243.74534 * 20 19 9 22 22 C 1.53002 * 117.50128 * 175.08109 * 20 19 9 23 23 N 1.32535 * 121.77303 * 0.02562 * 6 5 4 24 24 C 1.31957 * 120.84115 * 359.97438 * 23 6 5 25 25 H 1.08997 * 109.47053 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46874 * 299.99076 * 1 2 3 27 27 H 1.08993 * 109.47417 * 59.99885 * 1 2 3 28 28 H 1.08001 * 120.45763 * 359.97438 * 4 3 2 29 29 H 1.09003 * 109.47308 * 202.54562 * 10 9 7 30 30 H 1.08994 * 109.47405 * 322.54678 * 10 9 7 31 31 H 0.96997 * 120.00117 * 180.02562 * 14 13 11 32 32 H 1.09001 * 109.47038 * 205.09697 * 19 9 7 33 33 H 1.08991 * 109.47369 * 325.10341 * 19 9 7 34 34 H 1.09001 * 115.54828 * 29.41767 * 20 19 9 35 35 H 1.09002 * 117.49894 * 359.97438 * 21 20 19 36 36 H 1.09001 * 117.50067 * 145.02241 * 21 20 19 37 37 H 1.08998 * 117.49879 * 214.97864 * 22 20 19 38 38 H 1.08999 * 117.49395 * 0.02562 * 22 20 19 39 39 H 1.07996 * 120.46047 * 179.97438 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2093 0.0000 4 6 3.4367 1.3020 -0.0005 5 7 4.0000 2.4952 0.0000 6 6 3.2610 3.5955 0.0005 7 6 3.9342 4.9167 0.0073 8 8 5.1393 4.9839 0.1481 9 7 3.2095 6.0431 -0.1426 10 6 1.7501 5.9668 -0.2453 11 6 1.1533 5.8763 1.1355 12 1 1.7968 5.8752 2.0028 13 6 -0.2141 5.7938 1.2915 14 7 -0.9977 5.7946 0.2353 15 14 -0.9537 5.6809 3.0032 16 1 -0.5752 6.8845 3.7864 17 1 -2.4330 5.6038 2.8990 18 1 -0.4409 4.4653 3.6848 19 6 3.8811 7.3437 -0.2028 20 6 4.3309 7.6194 -1.6390 21 6 5.8342 7.7338 -1.8989 22 6 4.9536 8.9854 -1.9344 23 7 1.9366 3.5466 0.0010 24 6 1.3023 2.3895 0.0005 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5137 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 4.0447 0.4094 -0.0005 29 1 1.3739 6.8591 -0.7458 30 1 1.4719 5.0834 -0.8200 31 1 -1.9597 5.7370 0.3451 32 1 3.1911 8.1241 0.1179 33 1 4.7504 7.3345 0.4546 34 1 3.7184 7.1664 -2.4186 35 1 6.5030 7.6130 -1.0466 36 1 6.2108 7.3564 -2.8496 37 1 4.7512 9.4307 -2.9085 38 1 5.0433 9.6874 -1.1055 39 1 0.2229 2.3568 0.0014 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339928942.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:20 Heat of formation + Delta-G solvation = 15.255272 kcal Electronic energy + Delta-G solvation = -23639.991313 eV Core-core repulsion = 20163.956527 eV Total energy + Delta-G solvation = -3476.034786 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.43760 -40.65753 -39.38839 -38.13056 -36.59999 -34.71120 -34.30914 -32.29478 -29.63853 -28.87271 -27.81083 -25.81248 -25.08299 -24.51107 -23.16776 -22.08215 -20.86857 -19.23050 -19.17703 -18.66018 -18.18931 -17.34988 -17.11956 -16.57593 -16.31815 -15.94807 -15.80128 -15.48420 -15.26407 -14.64932 -14.63624 -14.48821 -14.17760 -13.81043 -13.47274 -12.98648 -12.82852 -12.62405 -12.58674 -12.46932 -12.32381 -12.23097 -12.03073 -11.82624 -11.66926 -11.29673 -10.99677 -10.78372 -10.47100 -9.84748 -9.72742 -9.39561 -8.04185 -6.09168 -0.48364 0.07821 1.39671 1.42609 1.48390 1.69497 1.87766 2.09807 2.46606 2.83060 2.92406 3.13109 3.18250 3.28406 3.37005 3.77281 3.86608 3.96667 4.04995 4.16092 4.35146 4.36341 4.40104 4.64654 4.67550 4.73208 4.78331 4.83332 4.96652 5.02178 5.03555 5.29423 5.30743 5.53866 5.74218 5.85372 5.91351 6.11562 6.28119 6.48041 6.85744 7.00570 7.27903 7.53289 9.02856 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.011455 B = 0.007010 C = 0.004784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2443.769547 B = 3993.105284 C = 5851.603340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.298 6.298 3 C 0.060 3.940 4 C 0.106 3.894 5 N -0.457 5.457 6 C 0.205 3.795 7 C 0.578 3.422 8 O -0.565 6.565 9 N -0.576 5.576 10 C 0.246 3.754 11 C -0.502 4.502 12 H 0.031 0.969 13 C 0.037 3.963 14 N -0.910 5.910 15 Si 0.934 3.066 16 H -0.280 1.280 17 H -0.277 1.277 18 H -0.282 1.282 19 C 0.150 3.850 20 C -0.186 4.186 21 C -0.172 4.172 22 C -0.150 4.150 23 N -0.401 5.401 24 C 0.042 3.958 25 H 0.138 0.862 26 H 0.061 0.939 27 H 0.068 0.932 28 H 0.214 0.786 29 H 0.012 0.988 30 H 0.071 0.929 31 H 0.263 0.737 32 H 0.086 0.914 33 H 0.069 0.931 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.096 0.904 37 H 0.111 0.889 38 H 0.106 0.894 39 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.202 -6.900 -3.565 8.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.208 6.208 3 C 0.007 3.993 4 C -0.064 4.064 5 N -0.172 5.172 6 C -0.062 4.062 7 C 0.364 3.636 8 O -0.444 6.444 9 N -0.305 5.305 10 C 0.126 3.874 11 C -0.541 4.541 12 H 0.049 0.951 13 C -0.163 4.163 14 N -0.550 5.550 15 Si 0.761 3.239 16 H -0.206 1.206 17 H -0.202 1.202 18 H -0.208 1.208 19 C 0.027 3.973 20 C -0.205 4.205 21 C -0.209 4.209 22 C -0.187 4.187 23 N -0.118 5.118 24 C -0.125 4.125 25 H 0.156 0.844 26 H 0.080 0.920 27 H 0.086 0.914 28 H 0.231 0.769 29 H 0.030 0.970 30 H 0.088 0.912 31 H 0.072 0.928 32 H 0.105 0.895 33 H 0.087 0.913 34 H 0.109 0.891 35 H 0.107 0.893 36 H 0.115 0.885 37 H 0.129 0.871 38 H 0.125 0.875 39 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 3.139 -6.139 -3.543 7.752 hybrid contribution -1.434 -0.710 1.048 1.912 sum 1.705 -6.848 -2.495 7.486 Atomic orbital electron populations 1.23559 0.75591 1.06725 1.02601 1.86038 1.23948 1.23747 1.87018 1.21213 0.95167 0.87017 0.95869 1.23274 0.89863 0.96043 0.97183 1.68162 1.40722 0.98413 1.09896 1.22556 0.87175 0.93809 1.02615 1.17400 0.85472 0.83089 0.77680 1.90647 1.14347 1.86986 1.52424 1.48128 1.09730 1.05027 1.67616 1.19753 0.72510 0.97991 0.97151 1.21233 0.91613 1.49220 0.92073 0.95057 1.25228 0.96969 0.95258 0.98815 1.69991 1.04201 1.51263 1.29593 0.86007 0.77676 0.78252 0.81932 1.20563 1.20211 1.20813 1.21047 0.97175 0.83917 0.95142 1.22605 0.97207 1.03402 0.97283 1.22999 0.92373 1.02486 1.03081 1.23046 1.01820 0.89805 1.04045 1.69299 1.08659 1.27710 1.06083 1.23993 1.02398 0.86842 0.99287 0.84373 0.92036 0.91380 0.76927 0.97042 0.91181 0.92770 0.89529 0.91311 0.89149 0.89309 0.88506 0.87063 0.87547 0.80051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.15 9.84 113.37 1.12 1.27 16 2 O -0.30 -6.84 10.51 -90.55 -0.95 -7.79 16 3 C 0.06 1.75 6.75 22.85 0.15 1.91 16 4 C 0.11 3.23 11.28 84.97 0.96 4.19 16 5 N -0.46 -18.27 10.12 -188.82 -1.91 -20.19 16 6 C 0.21 9.22 7.47 137.56 1.03 10.25 16 7 C 0.58 27.65 7.59 86.92 0.66 28.31 16 8 O -0.56 -28.30 16.51 -3.73 -0.06 -28.36 16 9 N -0.58 -26.34 2.49 -829.08 -2.06 -28.40 16 10 C 0.25 12.23 4.75 85.63 0.41 12.64 16 11 C -0.50 -26.62 7.87 25.60 0.20 -26.42 16 12 H 0.03 1.75 7.81 -2.91 -0.02 1.73 16 13 C 0.04 1.93 5.46 84.65 0.46 2.39 16 14 N -0.91 -48.41 13.29 21.45 0.28 -48.13 16 15 Si 0.93 41.82 29.54 68.60 2.03 43.84 16 16 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 17 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 18 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 19 C 0.15 5.81 5.63 86.38 0.49 6.30 16 20 C -0.19 -6.19 5.98 -10.79 -0.06 -6.25 16 21 C -0.17 -5.00 10.18 30.62 0.31 -4.68 16 22 C -0.15 -3.75 10.26 30.62 0.31 -3.44 16 23 N -0.40 -17.60 4.92 -188.82 -0.93 -18.53 16 24 C 0.04 1.50 10.31 84.97 0.88 2.38 16 25 H 0.14 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.06 1.05 7.71 -2.39 -0.02 1.04 16 27 H 0.07 1.08 7.71 -2.39 -0.02 1.06 16 28 H 0.21 4.57 8.06 -2.91 -0.02 4.55 16 29 H 0.01 0.60 8.01 -2.39 -0.02 0.58 16 30 H 0.07 3.65 5.29 -2.83 -0.01 3.64 16 31 H 0.26 13.30 8.31 -92.71 -0.77 12.53 16 32 H 0.09 3.26 8.03 -2.39 -0.02 3.24 16 33 H 0.07 2.70 7.26 -2.39 -0.02 2.68 16 34 H 0.09 3.23 8.14 -2.39 -0.02 3.21 16 35 H 0.09 2.69 8.03 -2.39 -0.02 2.67 16 36 H 0.10 2.59 8.14 -2.39 -0.02 2.57 16 37 H 0.11 2.35 8.14 -2.39 -0.02 2.33 16 38 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16 39 H 0.18 5.80 6.47 -2.91 -0.02 5.78 16 Total: -1.00 -66.75 335.44 4.36 -62.39 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: 1.06 Total: 16.32 kcal Atomic # 6 Polarization: 21.93 SS G_CDS: 6.91 Total: 28.84 kcal Atomic # 7 Polarization: -110.62 SS G_CDS: -4.62 Total: -115.24 kcal Atomic # 8 Polarization: -35.14 SS G_CDS: -1.01 Total: -36.15 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.84 kcal Total: -66.75 4.36 -62.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339928942.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.641 kcal (2) G-P(sol) polarization free energy of solvation -66.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds