Wall clock time and date at job start Tue Mar 31 2020 07:14:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.62902 * 2 1 4 4 C 1.53247 * 109.63059 * 239.40099 * 2 1 3 5 5 N 1.46470 * 109.85550 * 178.29068 * 4 2 1 6 6 C 1.46903 * 110.99589 * 197.76793 * 5 4 2 7 7 C 1.50699 * 109.47045 * 300.06547 * 6 5 4 8 8 C 1.38636 * 119.74984 * 90.00434 * 7 6 5 9 9 C 1.37613 * 120.24993 * 179.97438 * 8 7 6 10 10 C 1.40711 * 119.74614 * 0.26968 * 9 8 7 11 11 C 1.41403 * 120.24606 * 179.70288 * 10 9 8 12 12 H 1.07996 * 119.99673 * 24.27398 * 11 10 9 13 13 C 1.39947 * 119.99783 * 204.27786 * 11 10 9 14 14 N 1.30821 * 120.00278 * 17.70402 * 13 11 10 15 15 Si 1.86794 * 119.99656 * 197.69699 * 13 11 10 16 16 H 1.48501 * 109.47529 * 60.00194 * 15 13 11 17 17 H 1.48506 * 109.47057 * 180.02562 * 15 13 11 18 18 H 1.48508 * 109.47379 * 300.00118 * 15 13 11 19 19 C 1.40719 * 119.50996 * 359.43680 * 10 9 8 20 20 C 1.37615 * 119.74398 * 0.58788 * 19 10 9 21 21 C 1.46468 * 112.55910 * 72.65961 * 5 4 2 22 22 C 1.53239 * 109.86154 * 287.34090 * 21 5 4 23 23 S 1.81899 * 109.62831 * 120.38707 * 2 1 3 24 24 H 1.09004 * 109.47131 * 299.60902 * 1 2 3 25 25 H 1.09004 * 109.47240 * 59.60723 * 1 2 3 26 26 H 1.09000 * 109.47662 * 179.61283 * 1 2 3 27 27 H 1.08999 * 109.47483 * 180.39819 * 3 2 1 28 28 H 1.09009 * 109.46908 * 300.39091 * 3 2 1 29 29 H 1.09000 * 109.47681 * 60.38808 * 3 2 1 30 30 H 1.09002 * 109.40206 * 58.17508 * 4 2 1 31 31 H 1.08991 * 109.40961 * 298.41045 * 4 2 1 32 32 H 1.09006 * 109.46819 * 180.02562 * 6 5 4 33 33 H 1.08999 * 109.47346 * 60.06838 * 6 5 4 34 34 H 1.08005 * 119.87237 * 359.97438 * 8 7 6 35 35 H 1.08006 * 120.12661 * 180.02562 * 9 8 7 36 36 H 0.96999 * 120.00115 * 179.97438 * 14 13 11 37 37 H 1.07999 * 120.12422 * 180.29259 * 19 10 9 38 38 H 1.07998 * 119.87803 * 179.70785 * 20 19 10 39 39 H 1.09002 * 109.40350 * 47.46106 * 21 5 4 40 40 H 1.08999 * 109.40618 * 167.29310 * 21 5 4 41 41 H 1.08994 * 109.63664 * 181.70516 * 22 21 5 42 42 H 1.08999 * 109.63096 * 302.10187 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0439 1.4411 0.0000 4 6 2.0448 -0.7347 -1.2424 5 7 3.5089 -0.7024 -1.2685 6 6 4.0184 -1.0090 -2.6118 7 6 3.5567 -2.3835 -3.0225 8 6 2.3538 -2.5326 -3.6955 9 6 1.9226 -3.7828 -4.0758 10 6 2.7048 -4.9128 -3.7741 11 6 2.2688 -6.2031 -4.1544 12 1 1.5835 -6.3196 -4.9809 13 6 2.7252 -7.3289 -3.4596 14 7 3.2598 -7.1933 -2.2734 15 14 2.5709 -9.0254 -4.2261 16 1 3.3264 -9.0618 -5.5041 17 1 3.1235 -10.0415 -3.2948 18 1 1.1396 -9.3217 -4.4887 19 6 3.9270 -4.7489 -3.0961 20 6 4.3382 -3.4892 -2.7250 21 6 4.1084 -1.5855 -0.2655 22 6 3.9230 -0.9868 1.1329 23 16 2.1410 -0.8666 1.4779 24 1 -0.3633 0.5078 0.8935 25 1 -0.3634 0.5199 -0.8865 26 1 -0.3634 -1.0276 -0.0069 27 1 3.1339 1.4381 -0.0071 28 1 1.6763 1.9579 -0.8865 29 1 1.6878 1.9539 0.8934 30 1 1.6558 -0.2491 -2.1374 31 1 1.7058 -1.7703 -1.2172 32 1 5.1080 -0.9786 -2.6028 33 1 3.6408 -0.2720 -3.3205 34 1 1.7530 -1.6642 -3.9221 35 1 0.9853 -3.8966 -4.6004 36 1 3.5758 -7.9737 -1.7917 37 1 4.5375 -5.6089 -2.8638 38 1 5.2736 -3.3614 -2.2004 39 1 3.6260 -2.5621 -0.3082 40 1 5.1727 -1.6981 -0.4719 41 1 4.3966 -1.6315 1.8731 42 1 4.3736 0.0051 1.1692 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343540311.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:13 Heat of formation + Delta-G solvation = 10.056939 kcal Electronic energy + Delta-G solvation = -21548.997029 eV Core-core repulsion = 18619.030041 eV Total energy + Delta-G solvation = -2929.966988 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -38.94104 -37.05080 -34.72521 -33.59457 -31.35656 -29.70995 -29.11679 -27.23163 -26.98903 -25.22584 -23.46939 -21.58243 -20.77643 -20.21636 -19.70026 -17.35431 -16.37636 -15.42203 -15.33022 -14.99813 -14.63286 -14.54394 -14.05703 -13.59212 -13.55395 -13.44551 -12.92556 -12.55673 -12.40268 -12.14203 -12.07367 -11.83563 -11.66700 -11.57712 -11.30514 -11.16226 -11.08428 -10.90984 -10.85111 -10.66259 -10.40895 -10.35112 -9.80484 -9.45035 -9.38699 -9.18023 -7.97347 -7.52195 -7.45388 -7.35439 -6.81953 -4.41117 1.96332 2.69644 2.71178 2.99931 3.03113 3.05076 3.14668 3.88396 4.19437 4.57760 4.85653 5.01067 5.16632 5.20724 5.40709 5.48246 5.62073 5.64158 5.68551 5.79058 5.85073 5.88170 5.94593 5.99052 6.04134 6.14197 6.23879 6.24853 6.27905 6.32067 6.39618 6.42964 6.87768 7.01047 7.18762 7.27446 7.37981 7.42004 7.54997 7.79335 7.99084 8.04954 8.23885 8.57852 8.83530 8.91284 10.12384 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.022701 B = 0.004251 C = 0.004164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.119785 B = 6584.832533 C = 6722.578174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.016 4.016 3 C -0.127 4.127 4 C 0.070 3.930 5 N -0.543 5.543 6 C 0.121 3.879 7 C -0.254 4.254 8 C -0.077 4.077 9 C -0.228 4.228 10 C 0.114 3.886 11 C -0.463 4.463 12 H 0.077 0.923 13 C 0.077 3.923 14 N -0.791 5.791 15 Si 0.908 3.092 16 H -0.263 1.263 17 H -0.278 1.278 18 H -0.265 1.265 19 C -0.166 4.166 20 C -0.088 4.088 21 C 0.057 3.943 22 C -0.071 4.071 23 S -0.277 6.277 24 H 0.061 0.939 25 H 0.068 0.932 26 H 0.065 0.935 27 H 0.069 0.931 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.076 0.924 31 H 0.058 0.942 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.281 0.719 37 H 0.116 0.884 38 H 0.083 0.917 39 H 0.059 0.941 40 H 0.077 0.923 41 H 0.100 0.900 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.110 10.958 4.280 11.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.126 4.126 3 C -0.186 4.186 4 C -0.060 4.060 5 N -0.265 5.265 6 C -0.006 4.006 7 C -0.257 4.257 8 C -0.096 4.096 9 C -0.248 4.248 10 C 0.111 3.889 11 C -0.492 4.492 12 H 0.095 0.905 13 C -0.141 4.141 14 N -0.415 5.415 15 Si 0.732 3.268 16 H -0.188 1.188 17 H -0.203 1.203 18 H -0.190 1.190 19 C -0.186 4.186 20 C -0.107 4.107 21 C -0.073 4.073 22 C -0.220 4.220 23 S -0.050 6.050 24 H 0.080 0.920 25 H 0.087 0.913 26 H 0.084 0.916 27 H 0.088 0.912 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.094 0.906 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.101 0.899 35 H 0.108 0.892 36 H 0.092 0.908 37 H 0.134 0.866 38 H 0.101 0.899 39 H 0.078 0.922 40 H 0.096 0.904 41 H 0.118 0.882 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.212 10.919 5.530 12.242 hybrid contribution 0.357 -1.352 -1.414 1.989 sum 0.145 9.567 4.116 10.416 Atomic orbital electron populations 1.21652 0.91824 1.03042 1.02242 1.22786 0.98024 0.97595 0.94209 1.21919 1.02368 0.93087 1.01201 1.22187 0.88230 0.99865 0.95677 1.61653 1.06429 1.52566 1.05884 1.20794 0.98551 0.93594 0.87629 1.19630 0.99480 0.94529 1.12037 1.20344 0.95222 0.95756 0.98317 1.20953 1.00413 0.92983 1.10425 1.17617 0.90063 0.92340 0.88830 1.19587 1.24634 0.90550 1.14434 0.90511 1.25912 0.92857 1.01617 0.93755 1.69812 1.29479 1.32774 1.09484 0.86377 0.79742 0.80646 0.80042 1.18789 1.20277 1.18963 1.21300 0.97335 0.95481 1.04442 1.20502 0.97483 0.93143 0.99608 1.22141 1.00181 0.95434 0.89531 1.23495 0.93800 1.04497 1.00202 1.86757 1.08868 1.77950 1.31422 0.91951 0.91273 0.91589 0.91243 0.92438 0.92723 0.90585 0.92357 0.91616 0.91650 0.89854 0.89206 0.90759 0.86603 0.89874 0.92224 0.90434 0.88170 0.89691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.57 8.52 37.16 0.32 -1.26 16 2 C -0.02 -0.22 0.89 -90.50 -0.08 -0.30 16 3 C -0.13 -1.52 8.28 37.16 0.31 -1.21 16 4 C 0.07 1.09 2.93 -3.93 -0.01 1.08 16 5 N -0.54 -8.37 3.77 -236.49 -0.89 -9.26 16 6 C 0.12 1.99 5.42 -4.97 -0.03 1.97 16 7 C -0.25 -5.15 4.23 -104.33 -0.44 -5.60 16 8 C -0.08 -1.65 8.31 -39.66 -0.33 -1.98 16 9 C -0.23 -5.48 9.80 -38.88 -0.38 -5.87 16 10 C 0.11 2.99 5.57 -106.82 -0.60 2.40 16 11 C -0.46 -12.17 9.05 -37.74 -0.34 -12.51 16 12 H 0.08 1.95 7.91 -52.49 -0.41 1.53 16 13 C 0.08 1.91 5.14 -17.34 -0.09 1.82 16 14 N -0.79 -20.27 10.95 55.55 0.61 -19.66 16 15 Si 0.91 18.52 29.59 -169.99 -5.03 13.48 16 16 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 17 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 18 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 19 C -0.17 -4.21 8.70 -38.87 -0.34 -4.55 16 20 C -0.09 -1.96 8.42 -39.66 -0.33 -2.29 16 21 C 0.06 0.88 4.37 -3.94 -0.02 0.87 16 22 C -0.07 -0.97 6.34 37.28 0.24 -0.74 16 23 S -0.28 -4.16 21.18 -107.50 -2.28 -6.44 16 24 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 27 H 0.07 0.89 6.72 -51.93 -0.35 0.54 16 28 H 0.06 0.63 8.14 -51.92 -0.42 0.21 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.08 1.15 7.48 -51.93 -0.39 0.76 16 31 H 0.06 1.11 7.10 -51.93 -0.37 0.75 16 32 H 0.07 1.04 7.87 -51.93 -0.41 0.63 16 33 H 0.07 1.02 8.01 -51.93 -0.42 0.61 16 34 H 0.08 1.58 7.63 -52.48 -0.40 1.18 16 35 H 0.09 2.06 8.06 -52.48 -0.42 1.64 16 36 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 37 H 0.12 3.06 6.16 -52.49 -0.32 2.74 16 38 H 0.08 1.68 8.03 -52.49 -0.42 1.26 16 39 H 0.06 1.14 7.14 -51.93 -0.37 0.77 16 40 H 0.08 1.15 7.82 -51.93 -0.41 0.74 16 41 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 42 H 0.08 1.07 7.58 -51.93 -0.39 0.68 16 LS Contribution 337.43 15.07 5.09 5.09 Total: -1.00 -26.20 337.43 -11.38 -37.58 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: -6.76 Total: 7.37 kcal Atomic # 6 Polarization: -26.04 SS G_CDS: -2.13 Total: -28.16 kcal Atomic # 7 Polarization: -28.64 SS G_CDS: -0.28 Total: -28.92 kcal Atomic # 14 Polarization: 18.52 SS G_CDS: -5.03 Total: 13.48 kcal Atomic # 16 Polarization: -4.16 SS G_CDS: -2.28 Total: -6.44 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -26.20 -11.38 -37.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343540311.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.642 kcal (2) G-P(sol) polarization free energy of solvation -26.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds