Wall clock time and date at job start Tue Mar 31 2020 07:14:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.62902 * 2 1 4 4 C 1.53247 * 109.63059 * 239.40099 * 2 1 3 5 5 N 1.46470 * 109.85550 * 178.29068 * 4 2 1 6 6 C 1.46903 * 110.99589 * 197.76793 * 5 4 2 7 7 C 1.50699 * 109.47045 * 300.06547 * 6 5 4 8 8 C 1.38636 * 119.74984 * 90.00434 * 7 6 5 9 9 C 1.37613 * 120.24993 * 179.97438 * 8 7 6 10 10 C 1.40711 * 119.74614 * 0.26968 * 9 8 7 11 11 C 1.41403 * 120.24606 * 179.70288 * 10 9 8 12 12 H 1.07996 * 119.99673 * 24.27398 * 11 10 9 13 13 C 1.39947 * 119.99783 * 204.27786 * 11 10 9 14 14 N 1.30821 * 120.00278 * 17.70402 * 13 11 10 15 15 Si 1.86794 * 119.99656 * 197.69699 * 13 11 10 16 16 H 1.48501 * 109.47529 * 60.00194 * 15 13 11 17 17 H 1.48506 * 109.47057 * 180.02562 * 15 13 11 18 18 H 1.48508 * 109.47379 * 300.00118 * 15 13 11 19 19 C 1.40719 * 119.50996 * 359.43680 * 10 9 8 20 20 C 1.37615 * 119.74398 * 0.58788 * 19 10 9 21 21 C 1.46468 * 112.55910 * 72.65961 * 5 4 2 22 22 C 1.53239 * 109.86154 * 287.34090 * 21 5 4 23 23 S 1.81899 * 109.62831 * 120.38707 * 2 1 3 24 24 H 1.09004 * 109.47131 * 299.60902 * 1 2 3 25 25 H 1.09004 * 109.47240 * 59.60723 * 1 2 3 26 26 H 1.09000 * 109.47662 * 179.61283 * 1 2 3 27 27 H 1.08999 * 109.47483 * 180.39819 * 3 2 1 28 28 H 1.09009 * 109.46908 * 300.39091 * 3 2 1 29 29 H 1.09000 * 109.47681 * 60.38808 * 3 2 1 30 30 H 1.09002 * 109.40206 * 58.17508 * 4 2 1 31 31 H 1.08991 * 109.40961 * 298.41045 * 4 2 1 32 32 H 1.09006 * 109.46819 * 180.02562 * 6 5 4 33 33 H 1.08999 * 109.47346 * 60.06838 * 6 5 4 34 34 H 1.08005 * 119.87237 * 359.97438 * 8 7 6 35 35 H 1.08006 * 120.12661 * 180.02562 * 9 8 7 36 36 H 0.96999 * 120.00115 * 179.97438 * 14 13 11 37 37 H 1.07999 * 120.12422 * 180.29259 * 19 10 9 38 38 H 1.07998 * 119.87803 * 179.70785 * 20 19 10 39 39 H 1.09002 * 109.40350 * 47.46106 * 21 5 4 40 40 H 1.08999 * 109.40618 * 167.29310 * 21 5 4 41 41 H 1.08994 * 109.63664 * 181.70516 * 22 21 5 42 42 H 1.08999 * 109.63096 * 302.10187 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0439 1.4411 0.0000 4 6 2.0448 -0.7347 -1.2424 5 7 3.5089 -0.7024 -1.2685 6 6 4.0184 -1.0090 -2.6118 7 6 3.5567 -2.3835 -3.0225 8 6 2.3538 -2.5326 -3.6955 9 6 1.9226 -3.7828 -4.0758 10 6 2.7048 -4.9128 -3.7741 11 6 2.2688 -6.2031 -4.1544 12 1 1.5835 -6.3196 -4.9809 13 6 2.7252 -7.3289 -3.4596 14 7 3.2598 -7.1933 -2.2734 15 14 2.5709 -9.0254 -4.2261 16 1 3.3264 -9.0618 -5.5041 17 1 3.1235 -10.0415 -3.2948 18 1 1.1396 -9.3217 -4.4887 19 6 3.9270 -4.7489 -3.0961 20 6 4.3382 -3.4892 -2.7250 21 6 4.1084 -1.5855 -0.2655 22 6 3.9230 -0.9868 1.1329 23 16 2.1410 -0.8666 1.4779 24 1 -0.3633 0.5078 0.8935 25 1 -0.3634 0.5199 -0.8865 26 1 -0.3634 -1.0276 -0.0069 27 1 3.1339 1.4381 -0.0071 28 1 1.6763 1.9579 -0.8865 29 1 1.6878 1.9539 0.8934 30 1 1.6558 -0.2491 -2.1374 31 1 1.7058 -1.7703 -1.2172 32 1 5.1080 -0.9786 -2.6028 33 1 3.6408 -0.2720 -3.3205 34 1 1.7530 -1.6642 -3.9221 35 1 0.9853 -3.8966 -4.6004 36 1 3.5758 -7.9737 -1.7917 37 1 4.5375 -5.6089 -2.8638 38 1 5.2736 -3.3614 -2.2004 39 1 3.6260 -2.5621 -0.3082 40 1 5.1727 -1.6981 -0.4719 41 1 4.3966 -1.6315 1.8731 42 1 4.3736 0.0051 1.1692 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343540311.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:13 Heat of formation + Delta-G solvation = -1.896468 kcal Electronic energy + Delta-G solvation = -21549.515368 eV Core-core repulsion = 18619.030041 eV Total energy + Delta-G solvation = -2930.485327 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.41254 -38.65145 -36.07056 -35.23234 -32.82763 -31.43362 -30.79606 -28.47489 -28.19266 -26.73823 -24.94586 -23.13325 -22.42538 -21.61304 -21.11177 -19.24380 -17.64292 -17.17889 -16.61272 -16.30728 -16.08192 -15.80867 -15.70297 -15.23195 -14.84277 -14.68549 -14.31973 -14.08862 -13.85589 -13.67399 -13.34704 -13.08941 -12.99235 -12.94999 -12.85215 -12.70853 -12.49840 -12.26321 -12.17046 -12.04098 -11.98548 -11.58377 -11.51499 -11.26562 -11.03074 -10.53553 -9.43718 -9.34053 -9.17211 -8.67044 -8.63670 -6.36534 0.84500 0.92970 1.12650 1.34330 1.45309 1.50001 1.59831 2.17322 2.65379 2.98178 3.70636 3.75163 3.90350 4.06168 4.07496 4.22710 4.26258 4.38265 4.44201 4.48992 4.61400 4.65852 4.71693 4.75665 4.81167 4.91046 4.94590 4.97513 5.03723 5.06903 5.09489 5.12582 5.19045 5.34399 5.43498 5.44442 5.67442 5.92229 6.02084 6.06619 6.08310 6.27491 6.37591 6.68477 6.91760 7.01777 8.29554 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.022701 B = 0.004251 C = 0.004164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.119785 B = 6584.832533 C = 6722.578174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.007 4.007 3 C -0.119 4.119 4 C 0.074 3.926 5 N -0.526 5.526 6 C 0.123 3.877 7 C -0.234 4.234 8 C -0.076 4.076 9 C -0.247 4.247 10 C 0.080 3.920 11 C -0.505 4.505 12 H 0.072 0.928 13 C 0.036 3.964 14 N -0.826 5.826 15 Si 0.980 3.020 16 H -0.260 1.260 17 H -0.267 1.267 18 H -0.260 1.260 19 C -0.192 4.192 20 C -0.090 4.090 21 C 0.060 3.940 22 C -0.058 4.058 23 S -0.321 6.321 24 H 0.073 0.927 25 H 0.089 0.911 26 H 0.046 0.954 27 H 0.063 0.937 28 H 0.072 0.928 29 H 0.063 0.937 30 H 0.088 0.912 31 H 0.017 0.983 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.114 0.886 35 H 0.091 0.909 36 H 0.287 0.713 37 H 0.095 0.905 38 H 0.102 0.898 39 H 0.018 0.982 40 H 0.090 0.910 41 H 0.110 0.890 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.476 13.224 4.287 13.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.117 4.117 3 C -0.178 4.178 4 C -0.056 4.056 5 N -0.248 5.248 6 C -0.004 4.004 7 C -0.237 4.237 8 C -0.095 4.095 9 C -0.266 4.266 10 C 0.078 3.922 11 C -0.534 4.534 12 H 0.091 0.909 13 C -0.179 4.179 14 N -0.452 5.452 15 Si 0.800 3.200 16 H -0.184 1.184 17 H -0.191 1.191 18 H -0.184 1.184 19 C -0.212 4.212 20 C -0.109 4.109 21 C -0.070 4.070 22 C -0.207 4.207 23 S -0.094 6.094 24 H 0.092 0.908 25 H 0.107 0.893 26 H 0.065 0.935 27 H 0.082 0.918 28 H 0.091 0.909 29 H 0.082 0.918 30 H 0.106 0.894 31 H 0.035 0.965 32 H 0.100 0.900 33 H 0.105 0.895 34 H 0.132 0.868 35 H 0.109 0.891 36 H 0.098 0.902 37 H 0.113 0.887 38 H 0.120 0.880 39 H 0.036 0.964 40 H 0.108 0.892 41 H 0.128 0.872 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 0.151 13.206 5.544 14.324 hybrid contribution 0.243 -1.889 -1.372 2.347 sum 0.393 11.317 4.173 12.069 Atomic orbital electron populations 1.21675 0.90866 1.02319 1.03779 1.22843 0.98753 0.98169 0.91925 1.21859 1.01951 0.91549 1.02443 1.22158 0.88157 0.97906 0.97366 1.61735 1.06334 1.51599 1.05150 1.20909 0.99713 0.91261 0.88510 1.20108 0.98192 0.96171 1.09207 1.20667 0.95752 0.95670 0.97396 1.21156 1.00576 0.93793 1.11085 1.17956 0.90938 0.93290 0.90025 1.19825 1.26341 0.91807 1.15445 0.90946 1.26735 0.92066 1.05249 0.93801 1.69876 1.30551 1.34097 1.10637 0.85290 0.79859 0.75662 0.79140 1.18409 1.19119 1.18418 1.21259 0.97487 0.96250 1.06182 1.20751 0.98444 0.92629 0.99050 1.22113 1.00370 0.93623 0.90916 1.23470 0.92643 1.05570 0.99005 1.86953 1.10709 1.78842 1.32902 0.90846 0.89252 0.93478 0.91752 0.90876 0.91781 0.89383 0.96468 0.89992 0.89535 0.86834 0.89098 0.90224 0.88656 0.87985 0.96355 0.89179 0.87163 0.87787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.87 8.52 71.98 0.61 -2.26 16 2 C -0.01 -0.17 0.89 -10.71 -0.01 -0.18 16 3 C -0.12 -2.42 8.28 71.98 0.60 -1.82 16 4 C 0.07 2.16 2.93 86.47 0.25 2.41 16 5 N -0.53 -14.83 3.77 -902.11 -3.40 -18.22 16 6 C 0.12 3.65 5.42 85.56 0.46 4.11 16 7 C -0.23 -9.19 4.23 -19.67 -0.08 -9.28 16 8 C -0.08 -3.18 8.31 22.22 0.18 -2.99 16 9 C -0.25 -12.14 9.80 22.73 0.22 -11.92 16 10 C 0.08 4.40 5.57 -21.29 -0.12 4.28 16 11 C -0.50 -27.88 9.05 23.46 0.21 -27.67 16 12 H 0.07 3.87 7.91 -2.91 -0.02 3.85 16 13 C 0.04 1.87 5.14 85.26 0.44 2.31 16 14 N -0.83 -44.23 10.95 21.83 0.24 -43.99 16 15 Si 0.98 38.97 29.59 68.60 2.03 41.00 16 16 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 17 H -0.27 -10.01 7.11 99.48 0.71 -9.31 16 18 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 19 C -0.19 -10.15 8.70 22.73 0.20 -9.95 16 20 C -0.09 -4.00 8.42 22.22 0.19 -3.81 16 21 C 0.06 1.76 4.37 86.47 0.38 2.14 16 22 C -0.06 -1.49 6.34 72.06 0.46 -1.03 16 23 S -0.32 -9.30 21.18 -56.49 -1.20 -10.50 16 24 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 25 H 0.09 1.65 8.14 -2.38 -0.02 1.63 16 26 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.06 1.39 6.72 -2.39 -0.02 1.38 16 28 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 29 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.09 2.37 7.48 -2.39 -0.02 2.35 16 31 H 0.02 0.65 7.10 -2.39 -0.02 0.63 16 32 H 0.08 2.25 7.87 -2.38 -0.02 2.23 16 33 H 0.09 2.30 8.01 -2.39 -0.02 2.28 16 34 H 0.11 4.01 7.63 -2.91 -0.02 3.99 16 35 H 0.09 4.31 8.06 -2.91 -0.02 4.29 16 36 H 0.29 13.97 8.30 -92.71 -0.77 13.20 16 37 H 0.10 5.34 6.16 -2.91 -0.02 5.32 16 38 H 0.10 4.07 8.03 -2.91 -0.02 4.04 16 39 H 0.02 0.70 7.14 -2.39 -0.02 0.68 16 40 H 0.09 2.45 7.82 -2.39 -0.02 2.43 16 41 H 0.11 2.57 8.14 -2.39 -0.02 2.55 16 42 H 0.10 2.29 7.58 -2.39 -0.02 2.27 16 Total: -1.00 -59.76 337.43 2.65 -57.11 By element: Atomic # 1 Polarization: 29.28 SS G_CDS: 0.98 Total: 30.26 kcal Atomic # 6 Polarization: -59.66 SS G_CDS: 3.99 Total: -55.66 kcal Atomic # 7 Polarization: -59.06 SS G_CDS: -3.16 Total: -62.21 kcal Atomic # 14 Polarization: 38.97 SS G_CDS: 2.03 Total: 41.00 kcal Atomic # 16 Polarization: -9.30 SS G_CDS: -1.20 Total: -10.50 kcal Total: -59.76 2.65 -57.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343540311.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.212 kcal (2) G-P(sol) polarization free energy of solvation -59.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds