Wall clock time and date at job start Tue Mar 31 2020 06:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46504 * 109.47355 * 2 1 4 4 C 1.37096 * 119.99892 * 276.01241 * 3 2 1 5 5 H 1.07998 * 119.99872 * 178.13658 * 4 3 2 6 6 C 1.38944 * 120.00198 * 358.13794 * 4 3 2 7 7 N 1.31414 * 119.99951 * 30.50597 * 6 4 3 8 8 Si 1.86801 * 120.00236 * 210.50903 * 6 4 3 9 9 H 1.48496 * 109.47348 * 89.99754 * 8 6 4 10 10 H 1.48497 * 109.47214 * 210.00049 * 8 6 4 11 11 H 1.48500 * 109.46780 * 330.00156 * 8 6 4 12 12 C 1.34771 * 119.99801 * 96.00838 * 3 2 1 13 13 O 1.21293 * 120.00248 * 185.49765 * 12 3 2 14 14 C 1.50701 * 120.00019 * 5.50048 * 12 3 2 15 15 C 1.53001 * 115.54892 * 270.50562 * 14 12 3 16 16 C 1.50691 * 109.47465 * 303.26656 * 15 14 12 17 17 C 1.38220 * 120.01644 * 259.74165 * 16 15 14 18 18 C 1.38221 * 120.03050 * 179.72090 * 17 16 15 19 19 C 1.38268 * 120.04721 * 0.55061 * 18 17 16 20 20 C 1.38181 * 120.02580 * 359.72626 * 19 18 17 21 21 C 1.38436 * 120.01440 * 80.01369 * 16 15 14 22 22 F 1.35102 * 120.02301 * 0.02562 * 21 16 15 23 23 C 1.52999 * 117.49760 * 124.84147 * 14 12 3 24 24 C 1.53002 * 117.49950 * 56.18297 * 14 12 3 25 25 H 1.08997 * 109.47011 * 65.47959 * 1 2 3 26 26 H 1.08996 * 109.47122 * 185.47837 * 1 2 3 27 27 H 1.09000 * 109.46952 * 305.48367 * 1 2 3 28 28 H 1.09007 * 109.47031 * 240.00184 * 2 1 3 29 29 H 1.08996 * 109.47114 * 120.00024 * 2 1 3 30 30 H 0.97006 * 120.00045 * 179.97438 * 7 6 4 31 31 H 1.09002 * 109.46960 * 63.26758 * 15 14 12 32 32 H 1.09001 * 109.46957 * 183.26280 * 15 14 12 33 33 H 1.08009 * 119.98579 * 359.97438 * 17 16 15 34 34 H 1.07998 * 119.98017 * 180.27273 * 18 17 16 35 35 H 1.08004 * 119.98874 * 179.74875 * 19 18 17 36 36 H 1.08001 * 120.01289 * 180.02562 * 20 19 18 37 37 H 1.09002 * 117.50279 * 359.97438 * 23 14 12 38 38 H 1.09002 * 117.49979 * 145.02431 * 23 14 12 39 39 H 1.09004 * 117.49287 * 214.98083 * 24 14 12 40 40 H 1.08995 * 117.49808 * 359.97438 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1297 2.0689 -1.1808 5 1 2.4610 3.0968 -1.1778 6 6 1.8161 1.4435 -2.3812 7 7 0.9004 0.5014 -2.4118 8 14 2.6962 1.9418 -3.9518 9 1 3.9138 1.1091 -4.1225 10 1 1.7914 1.7393 -5.1118 11 1 3.0830 3.3732 -3.8696 12 6 2.3582 1.9758 1.1608 13 8 2.6671 3.1486 1.1738 14 6 2.3545 1.1833 2.4426 15 6 1.0294 1.1716 3.2073 16 6 0.6113 2.5875 3.5095 17 6 0.8330 3.1209 4.7652 18 6 0.4548 4.4214 5.0410 19 6 -0.1560 5.1866 4.0647 20 6 -0.3840 4.6536 2.8104 21 6 -0.0003 3.3527 2.5313 22 9 -0.2231 2.8304 1.3054 23 6 3.6448 1.1637 3.2647 24 6 3.2100 -0.0842 2.4920 25 1 -0.3633 0.4265 -0.9350 26 1 -0.3633 -1.0229 0.0981 27 1 -0.3633 0.5965 0.8368 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5138 0.8899 30 1 0.6813 0.0650 -3.2499 31 1 0.2638 0.6884 2.6003 32 1 1.1534 0.6223 4.1406 33 1 1.3058 2.5225 5.5301 34 1 0.6325 4.8388 6.0211 35 1 -0.4548 6.2014 4.2825 36 1 -0.8608 5.2516 2.0479 37 1 4.4964 1.7235 2.8782 38 1 3.5496 1.1419 4.3503 39 1 2.8289 -0.9264 3.0697 40 1 3.7752 -0.3451 1.5973 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343911114.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:35 Heat of formation + Delta-G solvation = -7.684239 kcal Electronic energy + Delta-G solvation = -24827.872174 eV Core-core repulsion = 21330.922695 eV Total energy + Delta-G solvation = -3496.949479 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.138 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -48.12699 -39.51608 -38.33216 -36.10313 -34.84780 -32.10027 -31.55584 -30.13949 -29.25641 -26.97759 -25.26741 -22.54822 -22.43049 -22.20392 -21.53006 -21.02378 -18.11881 -17.09314 -16.59039 -16.07071 -15.80355 -15.27747 -15.17046 -14.71047 -14.25915 -14.10755 -13.82488 -13.30718 -13.12445 -13.04489 -12.69183 -12.48948 -12.22956 -11.94926 -11.77766 -11.50069 -11.34462 -11.26930 -11.00060 -10.94654 -10.75248 -10.54388 -10.27319 -10.15660 -9.98324 -9.62644 -9.36700 -8.67248 -8.60408 -8.21302 -8.06709 -7.66828 -6.24568 -3.62888 1.54236 1.59993 3.19800 3.31015 3.36233 3.89252 3.96364 4.09741 4.24665 4.78443 4.89173 4.93427 5.08323 5.13229 5.17483 5.22719 5.39043 5.49980 5.56415 5.67458 5.75302 5.94715 5.98581 6.05591 6.22138 6.24995 6.33848 6.43530 6.48614 6.53068 6.55628 6.66235 6.72031 6.79360 6.90781 6.96442 7.30704 7.42241 7.58132 8.06196 8.21233 8.66062 9.31181 9.58500 10.15919 10.69437 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.019177 B = 0.006471 C = 0.005808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.760777 B = 4325.791428 C = 4819.916642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.120 3.880 3 N -0.430 5.430 4 C -0.303 4.303 5 H 0.103 0.897 6 C 0.034 3.966 7 N -0.856 5.856 8 Si 0.908 3.092 9 H -0.279 1.279 10 H -0.287 1.287 11 H -0.271 1.271 12 C 0.478 3.522 13 O -0.587 6.587 14 C -0.125 4.125 15 C -0.038 4.038 16 C -0.107 4.107 17 C -0.089 4.089 18 C -0.143 4.143 19 C -0.099 4.099 20 C -0.158 4.158 21 C 0.133 3.867 22 F -0.114 7.114 23 C -0.153 4.153 24 C -0.170 4.170 25 H 0.110 0.890 26 H 0.025 0.975 27 H 0.027 0.973 28 H 0.083 0.917 29 H 0.045 0.955 30 H 0.264 0.736 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.124 0.876 34 H 0.121 0.879 35 H 0.124 0.876 36 H 0.129 0.871 37 H 0.094 0.906 38 H 0.092 0.908 39 H 0.095 0.905 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.864 -0.763 12.275 12.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.004 4.004 3 N -0.147 5.147 4 C -0.431 4.431 5 H 0.121 0.879 6 C -0.169 4.169 7 N -0.495 5.495 8 Si 0.735 3.265 9 H -0.206 1.206 10 H -0.213 1.213 11 H -0.196 1.196 12 C 0.265 3.735 13 O -0.473 6.473 14 C -0.129 4.129 15 C -0.075 4.075 16 C -0.108 4.108 17 C -0.107 4.107 18 C -0.161 4.161 19 C -0.117 4.117 20 C -0.177 4.177 21 C 0.113 3.887 22 F -0.092 7.092 23 C -0.191 4.191 24 C -0.207 4.207 25 H 0.128 0.872 26 H 0.044 0.956 27 H 0.046 0.954 28 H 0.101 0.899 29 H 0.063 0.937 30 H 0.075 0.925 31 H 0.103 0.897 32 H 0.094 0.906 33 H 0.142 0.858 34 H 0.139 0.861 35 H 0.142 0.858 36 H 0.147 0.853 37 H 0.113 0.887 38 H 0.110 0.890 39 H 0.113 0.887 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -1.825 -0.343 12.037 12.179 hybrid contribution 0.283 0.000 -1.108 1.144 sum -1.542 -0.343 10.929 11.042 Atomic orbital electron populations 1.22456 0.96484 0.98439 1.04276 1.21523 0.95060 0.83599 1.00191 1.43703 1.54287 1.11610 1.05151 1.19656 1.42647 0.98688 0.82067 0.87932 1.25121 0.95736 0.96999 0.99029 1.70167 1.25316 1.27060 1.26964 0.86206 0.79776 0.79284 0.81221 1.20567 1.21286 1.19568 1.18621 0.84981 0.86962 0.82910 1.90504 1.54932 1.16163 1.85668 1.21298 0.92357 1.01073 0.98135 1.20068 0.95518 0.92342 0.99598 1.19771 1.00160 0.97150 0.93745 1.20791 0.99020 0.95468 0.95404 1.21003 1.01101 0.94518 0.99460 1.20866 0.98726 0.99513 0.92569 1.21111 1.03806 0.94339 0.98407 1.17603 0.97856 0.92357 0.80864 1.91644 1.91791 1.86194 1.39595 1.22932 0.97799 1.00695 0.97627 1.23085 1.03411 0.91440 1.02742 0.87155 0.95573 0.95367 0.89897 0.93710 0.92517 0.89667 0.90621 0.85815 0.86069 0.85806 0.85305 0.88707 0.88973 0.88703 0.88350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.52 9.60 37.16 0.36 -3.16 16 2 C 0.12 2.73 5.24 -4.04 -0.02 2.70 16 3 N -0.43 -11.00 2.59 -114.81 -0.30 -11.30 16 4 C -0.30 -8.51 9.40 -14.94 -0.14 -8.65 16 5 H 0.10 3.11 7.33 -52.49 -0.38 2.72 16 6 C 0.03 0.89 4.93 -17.47 -0.09 0.80 16 7 N -0.86 -22.03 8.00 55.50 0.44 -21.59 16 8 Si 0.91 20.81 29.65 -169.99 -5.04 15.77 16 9 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 10 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 12 C 0.48 11.75 4.17 -10.99 -0.05 11.70 16 13 O -0.59 -16.62 15.88 5.55 0.09 -16.53 16 14 C -0.13 -2.38 1.08 -155.66 -0.17 -2.55 16 15 C -0.04 -0.64 5.08 -27.89 -0.14 -0.78 16 16 C -0.11 -1.90 4.96 -104.56 -0.52 -2.41 16 17 C -0.09 -1.29 9.67 -39.59 -0.38 -1.67 16 18 C -0.14 -1.90 10.04 -39.58 -0.40 -2.30 16 19 C -0.10 -1.40 10.04 -39.59 -0.40 -1.79 16 20 C -0.16 -2.72 10.03 -39.51 -0.40 -3.12 16 21 C 0.13 2.65 6.00 -39.42 -0.24 2.41 16 22 F -0.11 -2.66 13.27 2.25 0.03 -2.63 16 23 C -0.15 -2.50 9.93 -26.69 -0.27 -2.77 16 24 C -0.17 -2.71 7.65 -26.69 -0.20 -2.92 16 25 H 0.11 2.79 5.55 -51.93 -0.29 2.50 16 26 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.03 0.61 4.60 -51.93 -0.24 0.37 16 28 H 0.08 2.02 6.20 -51.92 -0.32 1.70 16 29 H 0.04 0.89 4.42 -51.93 -0.23 0.66 16 30 H 0.26 6.47 8.31 -40.82 -0.34 6.13 16 31 H 0.09 1.52 5.90 -51.93 -0.31 1.21 16 32 H 0.08 1.01 7.96 -51.93 -0.41 0.60 16 33 H 0.12 1.44 8.04 -52.48 -0.42 1.02 16 34 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 35 H 0.12 1.36 8.06 -52.48 -0.42 0.94 16 36 H 0.13 2.06 8.06 -52.49 -0.42 1.64 16 37 H 0.09 1.68 8.14 -51.93 -0.42 1.26 16 38 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 39 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 40 H 0.10 1.68 7.79 -51.93 -0.40 1.28 16 LS Contribution 321.36 15.07 4.84 4.84 Total: -1.00 -31.27 321.36 -8.08 -39.35 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -5.10 Total: 6.60 kcal Atomic # 6 Polarization: -11.47 SS G_CDS: -3.04 Total: -14.51 kcal Atomic # 7 Polarization: -33.03 SS G_CDS: 0.15 Total: -32.89 kcal Atomic # 8 Polarization: -16.62 SS G_CDS: 0.09 Total: -16.53 kcal Atomic # 9 Polarization: -2.66 SS G_CDS: 0.03 Total: -2.63 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.04 Total: 15.77 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -31.27 -8.08 -39.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343911114.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.669 kcal (2) G-P(sol) polarization free energy of solvation -31.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds