Wall clock time and date at job start Tue Mar 31 2020 06:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34781 * 119.99848 * 2 1 4 4 O 1.21587 * 119.99797 * 0.02562 * 3 2 1 5 5 C 1.47581 * 119.99985 * 179.97438 * 3 2 1 6 6 C 1.39759 * 120.07354 * 180.02562 * 5 3 2 7 7 C 1.37656 * 119.92512 * 180.30342 * 6 5 3 8 8 C 1.39143 * 120.07308 * 359.47045 * 7 6 5 9 9 N 1.39435 * 119.92250 * 180.23494 * 8 7 6 10 10 C 1.34778 * 120.00013 * 33.68820 * 9 8 7 11 11 O 1.21571 * 119.99990 * 5.31164 * 10 9 8 12 12 N 1.34779 * 119.99819 * 185.31692 * 10 9 8 13 13 C 1.46496 * 120.00212 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.47155 * 179.97438 * 13 12 10 15 15 C 1.50700 * 109.46896 * 180.02562 * 14 13 12 16 16 H 1.08000 * 120.00062 * 359.97438 * 15 14 13 17 17 C 1.37875 * 119.99781 * 180.02562 * 15 14 13 18 18 N 1.31512 * 120.00293 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 119.99769 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47419 * 89.99846 * 19 17 15 21 21 H 1.48504 * 109.46873 * 210.00117 * 19 17 15 22 22 H 1.48498 * 109.47185 * 329.99265 * 19 17 15 23 23 C 1.39132 * 120.14693 * 0.50816 * 8 7 6 24 24 C 1.37660 * 120.07434 * 359.77165 * 23 8 7 25 25 H 1.08993 * 109.47626 * 59.99898 * 1 2 3 26 26 H 1.08998 * 109.46728 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.46964 * 299.99772 * 1 2 3 28 28 H 0.96999 * 120.00269 * 180.02562 * 2 1 3 29 29 H 1.08006 * 120.03714 * 0.02688 * 6 5 3 30 30 H 1.08004 * 119.96342 * 179.70434 * 7 6 5 31 31 H 0.96998 * 119.99852 * 213.68384 * 9 8 7 32 32 H 0.97009 * 119.99657 * 359.97438 * 12 10 9 33 33 H 1.09000 * 109.47112 * 299.99850 * 13 12 10 34 34 H 1.09003 * 109.46962 * 59.99580 * 13 12 10 35 35 H 1.09000 * 109.47186 * 300.00048 * 14 13 12 36 36 H 1.08997 * 109.47080 * 60.00417 * 14 13 12 37 37 H 0.96998 * 120.00388 * 180.02562 * 18 17 15 38 38 H 1.08000 * 119.96064 * 179.74631 * 23 8 7 39 39 H 1.08008 * 120.03568 * 179.97438 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 1.5309 2.2202 0.0005 5 6 3.6147 1.1673 0.0006 6 6 4.3150 2.3768 0.0011 7 6 5.6915 2.3732 -0.0047 8 6 6.3857 1.1674 0.0001 9 7 7.7801 1.1675 -0.0009 10 6 8.4543 2.1415 0.6419 11 8 7.8507 2.9644 1.3026 12 7 9.7977 2.2033 0.5521 13 6 10.5306 3.2623 1.2503 14 6 12.0293 3.1049 0.9860 15 6 12.7832 4.1940 1.7047 16 1 12.2470 4.9255 2.2910 17 6 14.1575 4.2571 1.6129 18 7 14.8104 3.3666 0.8986 19 14 15.0920 5.6075 2.5032 20 1 15.4527 5.1436 3.8670 21 1 16.3284 5.9343 1.7484 22 1 14.2378 6.8182 2.6019 23 6 5.6916 -0.0385 0.0000 24 6 4.3150 -0.0421 0.0000 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.9500 -0.8400 -0.0004 29 1 3.7767 3.3131 0.0016 30 1 6.2333 3.3075 -0.0091 31 1 8.2648 0.4665 -0.4640 32 1 10.2793 1.5464 0.0251 33 1 10.1975 4.2347 0.8874 34 1 10.3412 3.1899 2.3213 35 1 12.3621 2.1325 1.3491 36 1 12.2189 3.1772 -0.0850 37 1 15.7773 3.4108 0.8343 38 1 6.2335 -0.9727 -0.0004 39 1 3.7769 -0.9785 -0.0005 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344915417.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:17 Heat of formation + Delta-G solvation = -43.916912 kcal Electronic energy + Delta-G solvation = -21524.122926 eV Core-core repulsion = 18045.522241 eV Total energy + Delta-G solvation = -3478.600684 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.77625 -39.93426 -38.23572 -35.23985 -34.95234 -34.60937 -32.92687 -31.18838 -30.59933 -29.26613 -26.96385 -24.96759 -23.54783 -22.81096 -21.35225 -20.87675 -20.46398 -18.60719 -18.28649 -17.50739 -16.40202 -16.30352 -15.57830 -15.45081 -15.06734 -14.81627 -14.64340 -14.46168 -14.00767 -13.82227 -13.66344 -13.40591 -13.25497 -12.75223 -12.60478 -12.59240 -12.32344 -11.43588 -11.26227 -11.09143 -10.67813 -10.55015 -10.33952 -10.28335 -10.03864 -9.64807 -9.48504 -9.33359 -9.16553 -8.71051 -8.45708 -8.16196 -6.13728 -4.16709 0.65470 1.21771 2.58874 2.73433 2.91213 3.27286 3.29759 3.33695 3.38094 3.77106 4.28761 4.43350 4.50744 4.54020 4.71732 4.88584 5.11787 5.14851 5.23679 5.26742 5.38502 5.43232 5.77478 5.90850 6.01003 6.05135 6.18902 6.24649 6.28562 6.36887 6.66316 6.78359 6.83039 6.97694 7.15667 7.47842 7.55047 7.84554 7.95028 8.07605 8.24332 8.67307 8.89254 9.48489 10.97823 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.054034 B = 0.002195 C = 0.002129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.063923 B =12754.007501 C =13145.758015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.736 5.736 3 C 0.562 3.438 4 O -0.539 6.539 5 C -0.170 4.170 6 C -0.034 4.034 7 C -0.132 4.132 8 C 0.210 3.790 9 N -0.691 5.691 10 C 0.695 3.305 11 O -0.574 6.574 12 N -0.729 5.729 13 C 0.138 3.862 14 C 0.013 3.987 15 C -0.522 4.522 16 H 0.060 0.940 17 C 0.059 3.941 18 N -0.894 5.894 19 Si 0.898 3.102 20 H -0.279 1.279 21 H -0.286 1.286 22 H -0.272 1.272 23 C -0.164 4.164 24 C -0.063 4.063 25 H 0.060 0.940 26 H 0.075 0.925 27 H 0.060 0.940 28 H 0.401 0.599 29 H 0.138 0.862 30 H 0.146 0.854 31 H 0.408 0.592 32 H 0.396 0.604 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.023 0.977 36 H 0.023 0.977 37 H 0.262 0.738 38 H 0.132 0.868 39 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.408 -12.995 -5.183 26.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.388 5.388 3 C 0.351 3.649 4 O -0.417 6.417 5 C -0.174 4.174 6 C -0.053 4.053 7 C -0.153 4.153 8 C 0.113 3.887 9 N -0.338 5.338 10 C 0.396 3.604 11 O -0.451 6.451 12 N -0.382 5.382 13 C 0.015 3.985 14 C -0.025 4.025 15 C -0.561 4.561 16 H 0.078 0.922 17 C -0.143 4.143 18 N -0.533 5.533 19 Si 0.725 3.275 20 H -0.205 1.205 21 H -0.212 1.212 22 H -0.197 1.197 23 C -0.185 4.185 24 C -0.082 4.082 25 H 0.079 0.921 26 H 0.094 0.906 27 H 0.079 0.921 28 H 0.236 0.764 29 H 0.156 0.844 30 H 0.163 0.837 31 H 0.244 0.756 32 H 0.230 0.770 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.041 0.959 36 H 0.041 0.959 37 H 0.072 0.928 38 H 0.150 0.850 39 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -23.105 -11.459 -4.607 26.199 hybrid contribution 1.399 -0.556 0.005 1.506 sum -21.705 -12.015 -4.602 25.232 Atomic orbital electron populations 1.21534 0.79382 1.02187 1.02479 1.45709 1.07795 1.08696 1.76630 1.18290 0.87399 0.83563 0.75645 1.90780 1.70074 1.31186 1.49684 1.19758 0.92263 0.94588 1.10816 1.21136 0.93224 0.97668 0.93320 1.21268 0.93740 0.98374 1.01897 1.17755 0.82124 0.93958 0.94912 1.42757 1.04533 1.30135 1.56401 1.16078 0.82672 0.81562 0.80135 1.90936 1.67769 1.41690 1.44728 1.45612 1.04024 1.34311 1.54278 1.21709 0.93672 0.87692 0.95409 1.19337 0.87128 0.98163 0.97864 1.21030 0.91634 1.12615 1.30804 0.92155 1.24995 0.97756 0.96208 0.95320 1.69947 1.08103 1.35184 1.40038 0.86497 0.79276 0.82104 0.79594 1.20546 1.21157 1.19689 1.20759 0.94148 0.96690 1.06922 1.20932 0.93609 0.96657 0.97042 0.92141 0.90645 0.92132 0.76447 0.84446 0.83675 0.75621 0.77042 0.92372 0.92423 0.95898 0.95860 0.92812 0.85049 0.85599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.53 10.70 59.85 0.64 1.17 16 2 N -0.74 -5.43 5.66 -68.14 -0.39 -5.82 16 3 C 0.56 6.40 7.76 -12.45 -0.10 6.31 16 4 O -0.54 -8.18 16.34 5.29 0.09 -8.09 16 5 C -0.17 -1.86 5.88 -104.95 -0.62 -2.47 16 6 C -0.03 -0.43 9.58 -39.23 -0.38 -0.80 16 7 C -0.13 -1.78 8.62 -39.46 -0.34 -2.12 16 8 C 0.21 2.51 6.27 -83.73 -0.53 1.99 16 9 N -0.69 -8.16 5.33 -14.22 -0.08 -8.24 16 10 C 0.70 11.26 8.29 -86.92 -0.72 10.54 16 11 O -0.57 -11.49 14.03 5.30 0.07 -11.41 16 12 N -0.73 -11.87 5.56 -65.23 -0.36 -12.23 16 13 C 0.14 2.80 5.61 -4.04 -0.02 2.78 16 14 C 0.01 0.30 5.09 -27.88 -0.14 0.16 16 15 C -0.52 -14.17 9.11 -34.44 -0.31 -14.49 16 16 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 18 N -0.89 -25.63 13.29 55.43 0.74 -24.89 16 19 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 23 C -0.16 -1.47 9.94 -39.46 -0.39 -1.87 16 24 C -0.06 -0.52 9.53 -39.23 -0.37 -0.89 16 25 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 27 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.40 1.73 6.85 -40.82 -0.28 1.45 16 29 H 0.14 1.73 7.64 -52.48 -0.40 1.33 16 30 H 0.15 2.23 6.42 -52.48 -0.34 1.89 16 31 H 0.41 3.34 8.83 -40.82 -0.36 2.98 16 32 H 0.40 5.36 8.49 -40.82 -0.35 5.01 16 33 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 34 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.26 7.11 8.31 -40.82 -0.34 6.78 16 38 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 39 H 0.13 0.57 6.39 -52.48 -0.34 0.23 16 LS Contribution 338.64 15.07 5.10 5.10 Total: -1.00 -34.74 338.64 -8.20 -42.95 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -4.98 Total: 4.71 kcal Atomic # 6 Polarization: 5.21 SS G_CDS: -3.38 Total: 1.83 kcal Atomic # 7 Polarization: -51.09 SS G_CDS: -0.09 Total: -51.17 kcal Atomic # 8 Polarization: -19.66 SS G_CDS: 0.16 Total: -19.50 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -34.74 -8.20 -42.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344915417.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.971 kcal (2) G-P(sol) polarization free energy of solvation -34.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds