Wall clock time and date at job start Tue Mar 31 2020 06:38:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34781 * 119.99848 * 2 1 4 4 O 1.21587 * 119.99797 * 0.02562 * 3 2 1 5 5 C 1.47581 * 119.99985 * 179.97438 * 3 2 1 6 6 C 1.39759 * 120.07354 * 180.02562 * 5 3 2 7 7 C 1.37656 * 119.92512 * 180.30342 * 6 5 3 8 8 C 1.39143 * 120.07308 * 359.47045 * 7 6 5 9 9 N 1.39435 * 119.92250 * 180.23494 * 8 7 6 10 10 C 1.34778 * 120.00013 * 33.68820 * 9 8 7 11 11 O 1.21571 * 119.99990 * 5.31164 * 10 9 8 12 12 N 1.34779 * 119.99819 * 185.31692 * 10 9 8 13 13 C 1.46496 * 120.00212 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.47155 * 179.97438 * 13 12 10 15 15 C 1.50700 * 109.46896 * 180.02562 * 14 13 12 16 16 H 1.08000 * 120.00062 * 359.97438 * 15 14 13 17 17 C 1.37875 * 119.99781 * 180.02562 * 15 14 13 18 18 N 1.31512 * 120.00293 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 119.99769 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47419 * 89.99846 * 19 17 15 21 21 H 1.48504 * 109.46873 * 210.00117 * 19 17 15 22 22 H 1.48498 * 109.47185 * 329.99265 * 19 17 15 23 23 C 1.39132 * 120.14693 * 0.50816 * 8 7 6 24 24 C 1.37660 * 120.07434 * 359.77165 * 23 8 7 25 25 H 1.08993 * 109.47626 * 59.99898 * 1 2 3 26 26 H 1.08998 * 109.46728 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.46964 * 299.99772 * 1 2 3 28 28 H 0.96999 * 120.00269 * 180.02562 * 2 1 3 29 29 H 1.08006 * 120.03714 * 0.02688 * 6 5 3 30 30 H 1.08004 * 119.96342 * 179.70434 * 7 6 5 31 31 H 0.96998 * 119.99852 * 213.68384 * 9 8 7 32 32 H 0.97009 * 119.99657 * 359.97438 * 12 10 9 33 33 H 1.09000 * 109.47112 * 299.99850 * 13 12 10 34 34 H 1.09003 * 109.46962 * 59.99580 * 13 12 10 35 35 H 1.09000 * 109.47186 * 300.00048 * 14 13 12 36 36 H 1.08997 * 109.47080 * 60.00417 * 14 13 12 37 37 H 0.96998 * 120.00388 * 180.02562 * 18 17 15 38 38 H 1.08000 * 119.96064 * 179.74631 * 23 8 7 39 39 H 1.08008 * 120.03568 * 179.97438 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 1.5309 2.2202 0.0005 5 6 3.6147 1.1673 0.0006 6 6 4.3150 2.3768 0.0011 7 6 5.6915 2.3732 -0.0047 8 6 6.3857 1.1674 0.0001 9 7 7.7801 1.1675 -0.0009 10 6 8.4543 2.1415 0.6419 11 8 7.8507 2.9644 1.3026 12 7 9.7977 2.2033 0.5521 13 6 10.5306 3.2623 1.2503 14 6 12.0293 3.1049 0.9860 15 6 12.7832 4.1940 1.7047 16 1 12.2470 4.9255 2.2910 17 6 14.1575 4.2571 1.6129 18 7 14.8104 3.3666 0.8986 19 14 15.0920 5.6075 2.5032 20 1 15.4527 5.1436 3.8670 21 1 16.3284 5.9343 1.7484 22 1 14.2378 6.8182 2.6019 23 6 5.6916 -0.0385 0.0000 24 6 4.3150 -0.0421 0.0000 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.9500 -0.8400 -0.0004 29 1 3.7767 3.3131 0.0016 30 1 6.2333 3.3075 -0.0091 31 1 8.2648 0.4665 -0.4640 32 1 10.2793 1.5464 0.0251 33 1 10.1975 4.2347 0.8874 34 1 10.3412 3.1899 2.3213 35 1 12.3621 2.1325 1.3491 36 1 12.2189 3.1772 -0.0850 37 1 15.7773 3.4108 0.8343 38 1 6.2335 -0.9727 -0.0004 39 1 3.7769 -0.9785 -0.0005 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344915417.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:16 Heat of formation + Delta-G solvation = -70.414242 kcal Electronic energy + Delta-G solvation = -21525.271936 eV Core-core repulsion = 18045.522241 eV Total energy + Delta-G solvation = -3479.749695 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.84257 -40.92519 -39.24394 -36.74182 -35.86227 -35.69381 -34.84060 -32.05619 -31.93936 -30.64510 -27.71855 -26.69201 -24.62560 -23.67789 -22.94527 -22.17491 -21.41798 -19.68398 -19.26202 -18.58175 -18.36591 -17.19274 -16.79820 -16.50610 -16.25347 -16.21139 -15.86640 -15.61154 -15.26409 -14.92041 -14.86083 -14.36331 -14.23694 -14.11959 -13.65626 -13.57943 -13.22311 -13.06856 -12.95117 -12.53533 -12.31188 -12.25712 -11.71559 -11.58485 -11.43244 -11.26605 -11.06858 -10.60342 -10.20955 -10.10284 -10.01767 -9.14153 -8.24186 -6.33914 -0.24028 0.38788 1.41861 1.42483 1.49746 1.55306 1.70834 2.10042 2.24229 2.40976 2.88151 3.11022 3.18724 3.77842 3.83372 3.93809 4.28820 4.34970 4.46389 4.49757 4.50774 4.53006 4.64600 4.85848 4.96110 4.98012 5.09697 5.21993 5.23262 5.29418 5.39460 5.44802 5.49152 5.59397 5.77968 5.90825 5.93549 6.16632 6.52698 6.79053 6.95027 7.20052 7.35255 7.41360 8.87469 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.054034 B = 0.002195 C = 0.002129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.063923 B =12754.007501 C =13145.758015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.716 5.716 3 C 0.556 3.444 4 O -0.589 6.589 5 C -0.175 4.175 6 C -0.052 4.052 7 C -0.153 4.153 8 C 0.190 3.810 9 N -0.670 5.670 10 C 0.697 3.303 11 O -0.616 6.616 12 N -0.723 5.723 13 C 0.159 3.841 14 C 0.023 3.977 15 C -0.546 4.546 16 H 0.058 0.942 17 C 0.008 3.992 18 N -0.925 5.925 19 Si 0.963 3.037 20 H -0.272 1.272 21 H -0.280 1.280 22 H -0.268 1.268 23 C -0.146 4.146 24 C -0.045 4.045 25 H 0.050 0.950 26 H 0.117 0.883 27 H 0.048 0.952 28 H 0.419 0.581 29 H 0.121 0.879 30 H 0.114 0.886 31 H 0.428 0.572 32 H 0.411 0.589 33 H 0.046 0.954 34 H 0.047 0.953 35 H 0.012 0.988 36 H 0.011 0.989 37 H 0.266 0.734 38 H 0.172 0.828 39 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.118 -15.901 -5.249 28.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.368 5.368 3 C 0.345 3.655 4 O -0.471 6.471 5 C -0.179 4.179 6 C -0.071 4.071 7 C -0.174 4.174 8 C 0.093 3.907 9 N -0.319 5.319 10 C 0.397 3.603 11 O -0.496 6.496 12 N -0.377 5.377 13 C 0.035 3.965 14 C -0.014 4.014 15 C -0.585 4.585 16 H 0.076 0.924 17 C -0.191 4.191 18 N -0.564 5.564 19 Si 0.788 3.212 20 H -0.198 1.198 21 H -0.206 1.206 22 H -0.192 1.192 23 C -0.166 4.166 24 C -0.064 4.064 25 H 0.069 0.931 26 H 0.135 0.865 27 H 0.067 0.933 28 H 0.257 0.743 29 H 0.139 0.861 30 H 0.132 0.868 31 H 0.268 0.732 32 H 0.247 0.753 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.030 0.970 36 H 0.029 0.971 37 H 0.074 0.926 38 H 0.190 0.810 39 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -23.831 -14.470 -4.713 28.276 hybrid contribution 1.500 0.259 -0.010 1.522 sum -22.332 -14.211 -4.723 26.888 Atomic orbital electron populations 1.21719 0.78289 1.04588 1.01476 1.45604 1.08539 1.08203 1.74461 1.18452 0.87612 0.84004 0.75399 1.90759 1.70901 1.33164 1.52230 1.19873 0.92328 0.95007 1.10655 1.21043 0.93005 0.98299 0.94791 1.21067 0.94110 0.98239 1.04002 1.17982 0.81880 0.94619 0.96198 1.42401 1.04607 1.29334 1.55548 1.16139 0.82292 0.81866 0.80004 1.90921 1.68490 1.43533 1.46610 1.45224 1.04270 1.33871 1.54338 1.21149 0.91900 0.88420 0.95079 1.19138 0.89051 0.96727 0.96528 1.21458 0.92443 1.13447 1.31146 0.92352 1.25831 0.98722 0.98463 0.96056 1.70042 1.08506 1.36722 1.41154 0.85475 0.77910 0.79293 0.78551 1.19797 1.20556 1.19227 1.21166 0.94430 0.96709 1.04332 1.21416 0.93482 0.97265 0.94214 0.93092 0.86480 0.93312 0.74261 0.86121 0.86760 0.73206 0.75252 0.93578 0.93478 0.96975 0.97089 0.92554 0.81031 0.80705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.80 10.70 127.77 1.37 2.16 16 2 N -0.72 -8.52 5.66 -487.74 -2.76 -11.28 16 3 C 0.56 12.15 7.76 86.71 0.67 12.82 16 4 O -0.59 -18.41 16.34 -3.99 -0.07 -18.47 16 5 C -0.17 -3.60 5.88 -20.08 -0.12 -3.72 16 6 C -0.05 -1.37 9.58 22.50 0.22 -1.15 16 7 C -0.15 -4.33 8.62 22.35 0.19 -4.14 16 8 C 0.19 4.29 6.27 38.36 0.24 4.53 16 9 N -0.67 -14.86 5.33 -317.17 -1.69 -16.55 16 10 C 0.70 22.56 8.29 179.05 1.48 24.05 16 11 O -0.62 -25.46 14.03 -3.94 -0.06 -25.51 16 12 N -0.72 -23.44 5.56 -478.55 -2.66 -26.10 16 13 C 0.16 6.60 5.61 86.38 0.48 7.08 16 14 C 0.02 1.13 5.09 29.85 0.15 1.28 16 15 C -0.55 -30.01 9.11 25.60 0.23 -29.78 16 16 H 0.06 3.15 7.74 -2.91 -0.02 3.13 16 17 C 0.01 0.45 5.46 84.65 0.46 0.92 16 18 N -0.92 -53.22 13.29 21.45 0.28 -52.94 16 19 Si 0.96 43.23 29.54 68.60 2.03 45.25 16 20 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 21 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 22 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 23 C -0.15 -2.03 9.94 22.35 0.22 -1.81 16 24 C -0.04 -0.56 9.53 22.50 0.21 -0.34 16 25 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 26 H 0.12 0.16 8.14 -2.39 -0.02 0.14 16 27 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.42 1.64 6.85 -92.71 -0.63 1.01 16 29 H 0.12 3.45 7.64 -2.91 -0.02 3.43 16 30 H 0.11 3.88 6.42 -2.91 -0.02 3.86 16 31 H 0.43 5.84 8.83 -92.71 -0.82 5.02 16 32 H 0.41 10.77 8.49 -92.70 -0.79 9.98 16 33 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 37 H 0.27 14.39 8.31 -92.71 -0.77 13.62 16 38 H 0.17 1.08 8.06 -2.91 -0.02 1.05 16 39 H 0.18 0.43 6.39 -2.91 -0.02 0.41 16 Total: -1.00 -79.18 338.64 -0.23 -79.41 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: -1.13 Total: 14.28 kcal Atomic # 6 Polarization: 6.08 SS G_CDS: 5.82 Total: 11.90 kcal Atomic # 7 Polarization: -100.03 SS G_CDS: -6.83 Total: -106.86 kcal Atomic # 8 Polarization: -43.87 SS G_CDS: -0.12 Total: -43.99 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.25 kcal Total: -79.18 -0.23 -79.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344915417.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.997 kcal (2) G-P(sol) polarization free energy of solvation -79.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds