Wall clock time and date at job start Tue Mar 31 2020 06:05:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46901 * 109.46754 * 2 1 4 4 C 1.46900 * 111.00257 * 288.02657 * 3 2 1 5 5 C 1.50697 * 109.47363 * 160.36111 * 4 3 2 6 6 H 1.07995 * 120.00026 * 4.66038 * 5 4 3 7 7 C 1.37877 * 120.00155 * 184.66005 * 5 4 3 8 8 N 1.31519 * 119.99753 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00355 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47070 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47041 * 119.99659 * 9 7 5 12 12 H 1.48494 * 109.47277 * 240.00009 * 9 7 5 13 13 C 1.46903 * 110.99952 * 164.07087 * 3 2 1 14 14 C 1.50695 * 109.47361 * 293.95501 * 13 3 2 15 15 C 1.39874 * 126.04190 * 90.02123 * 14 13 3 16 16 N 1.30834 * 108.20132 * 179.97438 * 15 14 13 17 17 N 1.40085 * 108.20877 * 359.97438 * 16 15 14 18 18 C 1.46501 * 126.03697 * 180.02562 * 17 16 15 19 19 C 1.52998 * 109.47083 * 304.97300 * 18 17 16 20 20 F 1.39909 * 109.46999 * 59.99883 * 19 18 17 21 21 F 1.39894 * 109.47569 * 180.02562 * 19 18 17 22 22 F 1.39901 * 109.47208 * 300.00650 * 19 18 17 23 23 C 1.34942 * 107.92328 * 0.02562 * 17 16 15 24 24 H 1.09004 * 109.46910 * 179.45368 * 1 2 3 25 25 H 1.09001 * 109.47403 * 299.45407 * 1 2 3 26 26 H 1.09002 * 109.46908 * 59.45602 * 1 2 3 27 27 H 1.08995 * 109.47375 * 239.99789 * 2 1 3 28 28 H 1.09005 * 109.46966 * 119.99600 * 2 1 3 29 29 H 1.09003 * 109.46836 * 280.36510 * 4 3 2 30 30 H 1.09003 * 109.46740 * 40.35847 * 4 3 2 31 31 H 0.96993 * 119.99926 * 179.97438 * 8 7 5 32 32 H 1.09003 * 109.47064 * 173.94846 * 13 3 2 33 33 H 1.09001 * 109.46548 * 53.95548 * 13 3 2 34 34 H 1.08002 * 125.89687 * 0.21888 * 15 14 13 35 35 H 1.08992 * 109.47194 * 64.97159 * 18 17 16 36 36 H 1.08994 * 109.46621 * 184.97621 * 18 17 16 37 37 H 1.08000 * 126.12734 * 179.97438 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7950 2.0229 -1.3041 5 6 1.8463 3.5207 -1.1463 6 1 2.1019 3.9545 -0.1909 7 6 1.5669 4.3372 -2.2215 8 7 1.2562 3.8088 -3.3851 9 14 1.6312 6.1938 -2.0261 10 1 2.0043 6.5319 -0.6291 11 1 2.6427 6.7548 -2.9575 12 1 0.2986 6.7707 -2.3366 13 6 3.4385 1.4418 0.3764 14 6 3.5957 1.0060 1.8104 15 6 3.8150 -0.3024 2.2535 16 7 3.8982 -0.2831 3.5591 17 7 3.7347 1.0402 3.9886 18 6 3.7595 1.5047 5.3778 19 6 2.7302 0.7220 6.1957 20 9 3.0410 -0.6415 6.1542 21 9 2.7533 1.1658 7.5221 22 9 1.4548 0.9260 5.6582 23 6 3.5506 1.8115 2.8968 24 1 -0.3633 -1.0277 -0.0098 25 1 -0.3634 0.5053 0.8948 26 1 -0.3633 0.5223 -0.8851 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8901 29 1 2.5689 1.7043 -2.0025 30 1 0.8172 1.7312 -1.6875 31 1 1.0593 4.3832 -4.1415 32 1 3.8034 2.4629 0.2648 33 1 4.0127 0.7782 -0.2701 34 1 3.9045 -1.1769 1.6261 35 1 4.7531 1.3456 5.7965 36 1 3.5173 2.5669 5.4100 37 1 3.3948 2.8802 2.8910 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000349862758.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:40 Heat of formation + Delta-G solvation = -68.841071 kcal Electronic energy + Delta-G solvation = -23566.943331 eV Core-core repulsion = 19545.405114 eV Total energy + Delta-G solvation = -4021.538217 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.125 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -50.30275 -47.87036 -47.71665 -41.15948 -36.88764 -34.09420 -32.59092 -31.13576 -29.68386 -29.02192 -26.63047 -24.45404 -23.75807 -22.56025 -21.09156 -20.45426 -19.44475 -18.79867 -18.70864 -17.78460 -16.54665 -16.40919 -15.23143 -14.85305 -14.73173 -14.63545 -14.47448 -14.20020 -14.15996 -13.90459 -13.88812 -13.81276 -13.54532 -13.20881 -12.93626 -12.51377 -12.28134 -12.00965 -11.75377 -11.27707 -11.17185 -10.90520 -10.79235 -10.60344 -10.31913 -10.19576 -9.66536 -9.40476 -9.20188 -8.41917 -8.27233 -7.16018 -6.00388 -4.01128 1.75225 2.13777 2.50929 2.95931 3.30838 3.38539 3.41868 3.42433 3.64684 3.93334 4.43715 4.44535 4.63701 4.92804 5.05199 5.14929 5.36141 5.57520 5.71426 5.79573 5.94443 6.02584 6.19334 6.39079 6.47990 6.49654 6.66439 6.76667 6.89440 6.95646 7.29810 7.39093 7.69794 7.85332 8.17258 8.28742 8.59632 9.06615 9.62706 11.10273 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.019638 B = 0.003981 C = 0.003677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.463822 B = 7030.949172 C = 7612.938916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.051 3.949 3 N -0.531 5.531 4 C 0.189 3.811 5 C -0.501 4.501 6 H 0.062 0.938 7 C 0.054 3.946 8 N -0.899 5.899 9 Si 0.895 3.105 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.285 1.285 13 C 0.135 3.865 14 C -0.201 4.201 15 C 0.063 3.937 16 N -0.294 5.294 17 N -0.396 5.396 18 C 0.103 3.897 19 C 0.443 3.557 20 F -0.166 7.166 21 F -0.181 7.181 22 F -0.175 7.175 23 C 0.076 3.924 24 H 0.042 0.958 25 H 0.054 0.946 26 H 0.060 0.940 27 H 0.019 0.981 28 H 0.060 0.940 29 H -0.012 1.012 30 H 0.037 0.963 31 H 0.260 0.740 32 H 0.087 0.913 33 H 0.029 0.971 34 H 0.182 0.818 35 H 0.125 0.875 36 H 0.138 0.862 37 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.644 -5.665 16.949 18.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.078 4.078 3 N -0.256 5.256 4 C 0.065 3.935 5 C -0.539 4.539 6 H 0.080 0.920 7 C -0.147 4.147 8 N -0.540 5.540 9 Si 0.724 3.276 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.211 1.211 13 C 0.006 3.994 14 C -0.212 4.212 15 C -0.125 4.125 16 N -0.113 5.113 17 N -0.180 5.180 18 C -0.022 4.022 19 C 0.388 3.612 20 F -0.147 7.147 21 F -0.163 7.163 22 F -0.157 7.157 23 C -0.067 4.067 24 H 0.061 0.939 25 H 0.073 0.927 26 H 0.079 0.921 27 H 0.038 0.962 28 H 0.078 0.922 29 H 0.006 0.994 30 H 0.055 0.945 31 H 0.069 0.931 32 H 0.105 0.895 33 H 0.047 0.953 34 H 0.199 0.801 35 H 0.143 0.857 36 H 0.156 0.844 37 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 5.474 -6.003 18.308 20.030 hybrid contribution 0.060 0.974 -1.194 1.542 sum 5.534 -5.029 17.114 18.676 Atomic orbital electron populations 1.21731 0.95816 0.99752 1.02686 1.22004 0.95790 0.91061 0.98922 1.62167 1.15147 1.14326 1.33981 1.19800 0.96499 0.94181 0.83067 1.21195 1.45812 0.90723 0.96203 0.91965 1.24985 0.95626 0.98800 0.95276 1.69965 1.47887 1.35046 1.01054 0.86487 0.77533 0.85618 0.78007 1.19770 1.21217 1.21128 1.20270 0.90188 1.01149 0.87833 1.20311 1.11693 0.92244 0.96964 1.23915 0.98582 0.98238 0.91754 1.77433 1.24819 0.95764 1.13314 1.47968 1.59437 1.06465 1.04110 1.22626 0.99881 1.00118 0.79616 1.20689 0.82453 0.79627 0.78465 1.93271 1.92638 1.32710 1.96109 1.93204 1.96589 1.89265 1.37208 1.93252 1.41991 1.94734 1.85688 1.22388 1.00601 0.98368 0.85339 0.93866 0.92656 0.92116 0.96231 0.92185 0.99382 0.94527 0.93058 0.89455 0.95309 0.80125 0.85742 0.84408 0.80430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 9.99 37.16 0.37 -2.14 16 2 C 0.05 0.92 5.55 -3.82 -0.02 0.90 16 3 N -0.53 -11.02 4.37 -237.51 -1.04 -12.06 16 4 C 0.19 4.77 4.59 -4.98 -0.02 4.75 16 5 C -0.50 -13.57 8.61 -34.44 -0.30 -13.87 16 6 H 0.06 1.66 7.66 -52.49 -0.40 1.25 16 7 C 0.05 1.50 5.46 -17.82 -0.10 1.40 16 8 N -0.90 -26.29 13.29 55.43 0.74 -25.56 16 9 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16 10 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 11 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 13 C 0.13 2.43 5.27 -4.98 -0.03 2.40 16 14 C -0.20 -3.09 5.00 -105.05 -0.53 -3.62 16 15 C 0.06 0.90 10.31 -17.36 -0.18 0.73 16 16 N -0.29 -4.31 11.51 30.63 0.35 -3.95 16 17 N -0.40 -4.97 3.60 -61.37 -0.22 -5.20 16 18 C 0.10 0.86 6.51 -4.04 -0.03 0.83 16 19 C 0.44 4.67 3.28 37.16 0.12 4.79 16 20 F -0.17 -2.11 16.28 2.25 0.04 -2.07 16 21 F -0.18 -1.72 17.32 2.25 0.04 -1.68 16 22 F -0.18 -2.28 17.23 2.25 0.04 -2.24 16 23 C 0.08 1.03 11.36 -17.23 -0.20 0.83 16 24 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.06 1.19 6.52 -51.93 -0.34 0.85 16 27 H 0.02 0.36 8.05 -51.93 -0.42 -0.06 16 28 H 0.06 1.00 5.53 -51.93 -0.29 0.71 16 29 H -0.01 -0.31 8.00 -51.93 -0.42 -0.73 16 30 H 0.04 1.00 6.24 -51.93 -0.32 0.67 16 31 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 32 H 0.09 1.67 7.32 -51.93 -0.38 1.29 16 33 H 0.03 0.51 8.12 -51.93 -0.42 0.09 16 34 H 0.18 2.20 7.98 -52.49 -0.42 1.78 16 35 H 0.12 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.14 0.72 8.07 -51.93 -0.42 0.30 16 37 H 0.18 2.05 8.06 -52.49 -0.42 1.63 16 LS Contribution 324.66 15.07 4.89 4.89 Total: -1.00 -31.78 324.66 -5.73 -37.51 By element: Atomic # 1 Polarization: 1.90 SS G_CDS: -4.65 Total: -2.75 kcal Atomic # 6 Polarization: -2.10 SS G_CDS: -0.90 Total: -3.00 kcal Atomic # 7 Polarization: -46.59 SS G_CDS: -0.17 Total: -46.77 kcal Atomic # 9 Polarization: -6.11 SS G_CDS: 0.11 Total: -6.00 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -31.78 -5.73 -37.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349862758.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.333 kcal (2) G-P(sol) polarization free energy of solvation -31.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds