Wall clock time and date at job start Tue Mar 31 2020 06:05:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46901 * 109.46754 * 2 1 4 4 C 1.46900 * 111.00257 * 288.02657 * 3 2 1 5 5 C 1.50697 * 109.47363 * 160.36111 * 4 3 2 6 6 H 1.07995 * 120.00026 * 4.66038 * 5 4 3 7 7 C 1.37877 * 120.00155 * 184.66005 * 5 4 3 8 8 N 1.31519 * 119.99753 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00355 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47070 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47041 * 119.99659 * 9 7 5 12 12 H 1.48494 * 109.47277 * 240.00009 * 9 7 5 13 13 C 1.46903 * 110.99952 * 164.07087 * 3 2 1 14 14 C 1.50695 * 109.47361 * 293.95501 * 13 3 2 15 15 C 1.39874 * 126.04190 * 90.02123 * 14 13 3 16 16 N 1.30834 * 108.20132 * 179.97438 * 15 14 13 17 17 N 1.40085 * 108.20877 * 359.97438 * 16 15 14 18 18 C 1.46501 * 126.03697 * 180.02562 * 17 16 15 19 19 C 1.52998 * 109.47083 * 304.97300 * 18 17 16 20 20 F 1.39909 * 109.46999 * 59.99883 * 19 18 17 21 21 F 1.39894 * 109.47569 * 180.02562 * 19 18 17 22 22 F 1.39901 * 109.47208 * 300.00650 * 19 18 17 23 23 C 1.34942 * 107.92328 * 0.02562 * 17 16 15 24 24 H 1.09004 * 109.46910 * 179.45368 * 1 2 3 25 25 H 1.09001 * 109.47403 * 299.45407 * 1 2 3 26 26 H 1.09002 * 109.46908 * 59.45602 * 1 2 3 27 27 H 1.08995 * 109.47375 * 239.99789 * 2 1 3 28 28 H 1.09005 * 109.46966 * 119.99600 * 2 1 3 29 29 H 1.09003 * 109.46836 * 280.36510 * 4 3 2 30 30 H 1.09003 * 109.46740 * 40.35847 * 4 3 2 31 31 H 0.96993 * 119.99926 * 179.97438 * 8 7 5 32 32 H 1.09003 * 109.47064 * 173.94846 * 13 3 2 33 33 H 1.09001 * 109.46548 * 53.95548 * 13 3 2 34 34 H 1.08002 * 125.89687 * 0.21888 * 15 14 13 35 35 H 1.08992 * 109.47194 * 64.97159 * 18 17 16 36 36 H 1.08994 * 109.46621 * 184.97621 * 18 17 16 37 37 H 1.08000 * 126.12734 * 179.97438 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7950 2.0229 -1.3041 5 6 1.8463 3.5207 -1.1463 6 1 2.1019 3.9545 -0.1909 7 6 1.5669 4.3372 -2.2215 8 7 1.2562 3.8088 -3.3851 9 14 1.6312 6.1938 -2.0261 10 1 2.0043 6.5319 -0.6291 11 1 2.6427 6.7548 -2.9575 12 1 0.2986 6.7707 -2.3366 13 6 3.4385 1.4418 0.3764 14 6 3.5957 1.0060 1.8104 15 6 3.8150 -0.3024 2.2535 16 7 3.8982 -0.2831 3.5591 17 7 3.7347 1.0402 3.9886 18 6 3.7595 1.5047 5.3778 19 6 2.7302 0.7220 6.1957 20 9 3.0410 -0.6415 6.1542 21 9 2.7533 1.1658 7.5221 22 9 1.4548 0.9260 5.6582 23 6 3.5506 1.8115 2.8968 24 1 -0.3633 -1.0277 -0.0098 25 1 -0.3634 0.5053 0.8948 26 1 -0.3633 0.5223 -0.8851 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8901 29 1 2.5689 1.7043 -2.0025 30 1 0.8172 1.7312 -1.6875 31 1 1.0593 4.3832 -4.1415 32 1 3.8034 2.4629 0.2648 33 1 4.0127 0.7782 -0.2701 34 1 3.9045 -1.1769 1.6261 35 1 4.7531 1.3456 5.7965 36 1 3.5173 2.5669 5.4100 37 1 3.3948 2.8802 2.8910 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349862758.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:39 Heat of formation + Delta-G solvation = -89.016481 kcal Electronic energy + Delta-G solvation = -23567.818203 eV Core-core repulsion = 19545.405114 eV Total energy + Delta-G solvation = -4022.413089 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.125 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -51.15080 -48.70163 -48.62021 -42.21729 -38.48678 -35.09991 -34.57433 -32.43003 -31.06407 -30.22919 -28.33105 -25.85064 -24.73070 -24.33818 -22.18922 -21.69116 -20.85727 -19.64519 -19.57190 -18.68528 -18.48077 -17.48142 -16.75382 -16.22716 -16.02957 -15.67960 -15.48170 -15.40419 -15.26766 -15.06838 -14.95917 -14.79940 -14.75931 -14.35543 -14.11920 -14.00444 -13.62385 -13.19297 -13.14358 -12.96620 -12.81970 -12.58265 -12.40402 -12.22830 -12.03339 -11.62713 -11.35273 -11.14795 -10.53168 -10.43518 -9.43534 -8.85338 -8.11577 -6.20598 0.75853 1.26067 1.45643 1.46654 1.59183 1.70100 1.81292 2.46722 2.64931 2.91923 3.13965 3.20666 3.56608 3.66824 3.97549 4.08385 4.11100 4.28842 4.39561 4.47859 4.59882 4.72576 4.77487 4.91452 5.04427 5.13817 5.22423 5.37124 5.37860 5.42815 5.63577 5.75984 5.94209 6.18451 6.53104 6.63427 6.75657 6.96118 7.48683 8.99185 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.019638 B = 0.003981 C = 0.003677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.463822 B = 7030.949172 C = 7612.938916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.051 3.949 3 N -0.536 5.536 4 C 0.204 3.796 5 C -0.511 4.511 6 H 0.066 0.934 7 C -0.001 4.001 8 N -0.938 5.938 9 Si 0.966 3.034 10 H -0.258 1.258 11 H -0.282 1.282 12 H -0.284 1.284 13 C 0.142 3.858 14 C -0.227 4.227 15 C 0.060 3.940 16 N -0.313 5.313 17 N -0.390 5.390 18 C 0.098 3.902 19 C 0.441 3.559 20 F -0.182 7.182 21 F -0.174 7.174 22 F -0.193 7.193 23 C 0.087 3.913 24 H 0.072 0.928 25 H 0.050 0.950 26 H 0.033 0.967 27 H 0.017 0.983 28 H 0.082 0.918 29 H -0.040 1.040 30 H 0.009 0.991 31 H 0.261 0.739 32 H 0.071 0.929 33 H 0.027 0.973 34 H 0.195 0.805 35 H 0.154 0.846 36 H 0.176 0.824 37 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.308 -4.734 19.027 20.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.077 4.077 3 N -0.261 5.261 4 C 0.078 3.922 5 C -0.549 4.549 6 H 0.084 0.916 7 C -0.198 4.198 8 N -0.580 5.580 9 Si 0.791 3.209 10 H -0.182 1.182 11 H -0.208 1.208 12 H -0.210 1.210 13 C 0.014 3.986 14 C -0.238 4.238 15 C -0.127 4.127 16 N -0.132 5.132 17 N -0.174 5.174 18 C -0.025 4.025 19 C 0.386 3.614 20 F -0.163 7.163 21 F -0.156 7.156 22 F -0.174 7.174 23 C -0.057 4.057 24 H 0.091 0.909 25 H 0.070 0.930 26 H 0.052 0.948 27 H 0.035 0.965 28 H 0.100 0.900 29 H -0.022 1.022 30 H 0.027 0.973 31 H 0.070 0.930 32 H 0.090 0.910 33 H 0.045 0.955 34 H 0.212 0.788 35 H 0.172 0.828 36 H 0.193 0.807 37 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 6.151 -5.092 20.434 21.938 hybrid contribution -0.139 0.637 -1.746 1.863 sum 6.012 -4.456 18.688 20.130 Atomic orbital electron populations 1.21688 0.95446 1.01231 1.01075 1.22074 0.96090 0.89801 0.99746 1.62126 1.17273 1.15786 1.30913 1.19445 0.94001 0.94036 0.84685 1.21517 1.45325 0.91743 0.96344 0.91559 1.25888 0.95182 1.03877 0.94863 1.70102 1.48992 1.36907 1.01961 0.85380 0.77421 0.79425 0.78649 1.18203 1.20785 1.21038 1.20108 0.88312 1.00337 0.89891 1.20052 1.14599 0.93351 0.95789 1.24107 0.98310 0.98360 0.91916 1.77402 1.25387 0.97171 1.13288 1.48191 1.58045 1.05661 1.05481 1.23124 1.00683 1.01582 0.77072 1.20998 0.82191 0.79167 0.79017 1.93241 1.92673 1.34198 1.96222 1.93217 1.96522 1.89054 1.36764 1.93219 1.43442 1.94763 1.86000 1.22677 0.98644 0.99193 0.85198 0.90869 0.93037 0.94801 0.96513 0.90022 1.02248 0.97251 0.92973 0.91007 0.95459 0.78796 0.82805 0.80685 0.78335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.81 9.99 71.98 0.72 -4.09 16 2 C 0.05 1.84 5.55 86.31 0.48 2.32 16 3 N -0.54 -22.43 4.37 -905.34 -3.96 -26.38 16 4 C 0.20 10.65 4.59 85.56 0.39 11.04 16 5 C -0.51 -28.00 8.61 25.60 0.22 -27.78 16 6 H 0.07 3.50 7.66 -2.91 -0.02 3.48 16 7 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 8 N -0.94 -56.00 13.29 21.45 0.28 -55.72 16 9 Si 0.97 43.21 29.54 68.60 2.03 45.23 16 10 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 11 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 12 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 13 C 0.14 5.12 5.27 85.55 0.45 5.57 16 14 C -0.23 -6.66 5.00 -20.14 -0.10 -6.76 16 15 C 0.06 1.64 10.31 85.24 0.88 2.52 16 16 N -0.31 -8.53 11.51 -57.02 -0.66 -9.19 16 17 N -0.39 -8.72 3.60 -348.08 -1.25 -9.97 16 18 C 0.10 1.30 6.51 86.38 0.56 1.86 16 19 C 0.44 8.25 3.28 71.98 0.24 8.48 16 20 F -0.18 -4.33 16.28 44.97 0.73 -3.60 16 21 F -0.17 -2.87 17.32 44.97 0.78 -2.10 16 22 F -0.19 -4.67 17.23 44.97 0.78 -3.89 16 23 C 0.09 2.15 11.36 83.54 0.95 3.10 16 24 H 0.07 2.09 8.14 -2.38 -0.02 2.07 16 25 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 26 H 0.03 1.35 6.52 -2.39 -0.02 1.33 16 27 H 0.02 0.61 8.05 -2.39 -0.02 0.59 16 28 H 0.08 2.61 5.53 -2.38 -0.01 2.60 16 29 H -0.04 -2.27 8.00 -2.39 -0.02 -2.29 16 30 H 0.01 0.54 6.24 -2.39 -0.01 0.52 16 31 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 32 H 0.07 2.77 7.32 -2.39 -0.02 2.75 16 33 H 0.03 0.97 8.12 -2.39 -0.02 0.96 16 34 H 0.20 4.46 7.98 -2.91 -0.02 4.44 16 35 H 0.15 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.18 1.00 8.07 -2.39 -0.02 0.98 16 37 H 0.20 3.94 8.06 -2.91 -0.02 3.92 16 Total: -1.00 -69.42 324.66 5.06 -64.36 By element: Atomic # 1 Polarization: 3.51 SS G_CDS: 1.08 Total: 4.59 kcal Atomic # 6 Polarization: -8.58 SS G_CDS: 5.25 Total: -3.33 kcal Atomic # 7 Polarization: -95.68 SS G_CDS: -5.58 Total: -101.26 kcal Atomic # 9 Polarization: -11.87 SS G_CDS: 2.29 Total: -9.59 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.23 kcal Total: -69.42 5.06 -64.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349862758.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.661 kcal (2) G-P(sol) polarization free energy of solvation -69.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds