Wall clock time and date at job start Tue Mar 31 2020 06:44:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35685 * 116.99658 * 2 1 4 4 C 1.38655 * 119.64607 * 179.97438 * 3 2 1 5 5 C 1.39135 * 119.02425 * 179.72359 * 4 3 2 6 6 N 1.39558 * 120.82299 * 180.29621 * 5 4 3 7 7 C 1.34771 * 120.00684 * 325.85321 * 6 5 4 8 8 O 1.21587 * 119.99558 * 4.68083 * 7 6 5 9 9 N 1.34777 * 120.00294 * 184.68225 * 7 6 5 10 10 C 1.46491 * 120.00025 * 180.02562 * 9 7 6 11 11 C 1.53003 * 109.47309 * 184.79000 * 10 9 7 12 12 C 1.50696 * 115.54781 * 56.18690 * 11 10 9 13 13 H 1.08009 * 119.99957 * 264.68085 * 12 11 10 14 14 C 1.37873 * 120.00605 * 84.68157 * 12 11 10 15 15 N 1.31517 * 119.99639 * 1.94104 * 14 12 11 16 16 Si 1.86798 * 120.00432 * 181.93854 * 14 12 11 17 17 H 1.48503 * 109.46812 * 90.00140 * 16 14 12 18 18 H 1.48495 * 109.47444 * 210.00047 * 16 14 12 19 19 H 1.48499 * 109.47117 * 330.00514 * 16 14 12 20 20 C 1.52998 * 117.49803 * 270.51709 * 11 10 9 21 21 C 1.52993 * 117.50165 * 201.85429 * 11 10 9 22 22 C 1.39566 * 118.34691 * 0.28248 * 5 4 3 23 23 C 1.37798 * 119.19625 * 359.97438 * 22 5 4 24 24 N 1.32059 * 120.91024 * 0.02562 * 23 22 5 25 25 H 1.09000 * 109.46988 * 60.00115 * 1 2 3 26 26 H 1.09008 * 109.46935 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47033 * 299.99698 * 1 2 3 28 28 H 1.08001 * 120.48877 * 359.97438 * 4 3 2 29 29 H 0.97004 * 119.99460 * 145.85166 * 6 5 4 30 30 H 0.96996 * 119.99706 * 359.97438 * 9 7 6 31 31 H 1.09004 * 109.47254 * 304.79142 * 10 9 7 32 32 H 1.09005 * 109.47533 * 64.79175 * 10 9 7 33 33 H 0.96994 * 120.00137 * 185.02272 * 15 14 12 34 34 H 1.08997 * 117.49912 * 359.97438 * 20 11 10 35 35 H 1.09003 * 117.49776 * 145.02190 * 20 11 10 36 36 H 1.09000 * 117.50242 * 214.97571 * 21 11 10 37 37 H 1.09008 * 117.50038 * 359.97438 * 21 11 10 38 38 H 1.07991 * 120.39953 * 180.02562 * 22 5 4 39 39 H 1.08003 * 119.54393 * 180.02562 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2090 0.0000 4 6 3.4300 1.2731 0.0005 5 6 4.0481 2.5196 -0.0053 6 7 5.4394 2.6278 -0.0112 7 6 6.1889 1.7189 0.6434 8 8 5.6592 0.7579 1.1671 9 7 7.5255 1.8752 0.7175 10 6 8.3402 0.8869 1.4285 11 6 9.7955 1.3578 1.4665 12 6 10.0227 2.7182 2.0738 13 1 10.0844 3.5896 1.4386 14 6 10.1518 2.8505 3.4400 15 7 10.1149 1.7851 4.2103 16 14 10.3792 4.5430 4.1972 17 1 9.0508 5.1251 4.5161 18 1 11.1797 4.4248 5.4423 19 1 11.0878 5.4246 3.2350 20 6 10.7034 0.9407 0.3079 21 6 10.8758 0.2970 1.6859 22 6 3.2420 3.6590 -0.0055 23 6 1.8718 3.5130 -0.0004 24 7 1.3173 2.3145 0.0051 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 4.0204 0.3688 0.0014 29 1 5.8671 3.3573 -0.4865 30 1 7.9481 2.6416 0.2994 31 1 7.9681 0.7741 2.4468 32 1 8.2819 -0.0714 0.9122 33 1 10.1323 1.8833 5.1750 34 1 10.2642 0.3305 -0.4812 35 1 11.4655 1.6501 -0.0149 36 1 11.7512 0.5831 2.2690 37 1 10.5499 -0.7366 1.8036 38 1 3.6868 4.6430 -0.0104 39 1 1.2427 4.3909 -0.0009 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352504935.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:32 Heat of formation + Delta-G solvation = -0.147750 kcal Electronic energy + Delta-G solvation = -22586.692492 eV Core-core repulsion = 19109.989781 eV Total energy + Delta-G solvation = -3476.702711 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.87035 -39.61838 -37.85916 -36.84317 -34.88073 -33.54705 -32.02758 -30.84643 -30.49107 -27.26833 -26.33669 -25.27634 -23.64897 -22.61422 -21.24162 -20.58300 -19.52073 -18.69527 -18.10881 -16.80753 -16.29491 -15.95988 -15.90079 -15.69495 -15.15105 -14.72827 -14.44130 -14.26192 -13.86174 -13.76906 -13.49070 -13.18808 -12.78269 -12.36365 -12.09753 -11.78056 -11.64206 -11.31217 -11.05168 -10.98009 -10.72860 -10.58160 -10.30377 -10.14357 -9.62477 -9.43307 -9.11817 -8.70922 -8.53030 -8.49641 -8.34429 -8.08511 -6.13403 -4.23299 1.23552 1.26159 2.73393 3.17965 3.21916 3.30324 3.30431 3.47802 3.88703 4.30051 4.32751 4.57845 4.97088 5.08644 5.15307 5.16846 5.23754 5.24552 5.28373 5.50642 5.68760 5.83474 5.95348 6.07419 6.21278 6.26423 6.41724 6.46121 6.64527 6.72944 6.74977 7.05122 7.10852 7.23930 7.28148 7.33672 7.49056 7.74820 7.89452 8.26688 8.36139 8.77954 8.89414 9.44641 10.94626 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.020981 B = 0.003585 C = 0.003324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.227576 B = 7808.968093 C = 8421.869903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.306 6.306 3 C 0.333 3.667 4 C -0.196 4.196 5 C 0.253 3.747 6 N -0.686 5.686 7 C 0.695 3.305 8 O -0.578 6.578 9 N -0.706 5.706 10 C 0.179 3.821 11 C 0.024 3.976 12 C -0.501 4.501 13 H 0.059 0.941 14 C 0.075 3.925 15 N -0.873 5.873 16 Si 0.889 3.111 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.273 1.273 20 C -0.212 4.212 21 C -0.142 4.142 22 C -0.243 4.243 23 C 0.152 3.848 24 N -0.560 5.560 25 H 0.056 0.944 26 H 0.093 0.907 27 H 0.057 0.943 28 H 0.160 0.840 29 H 0.411 0.589 30 H 0.400 0.600 31 H 0.072 0.928 32 H 0.037 0.963 33 H 0.262 0.738 34 H 0.065 0.935 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.065 0.935 38 H 0.139 0.861 39 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.298 2.659 -9.963 16.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.213 6.213 3 C 0.155 3.845 4 C -0.219 4.219 5 C 0.148 3.852 6 N -0.334 5.334 7 C 0.395 3.605 8 O -0.456 6.456 9 N -0.358 5.358 10 C 0.056 3.944 11 C 0.023 3.977 12 C -0.539 4.539 13 H 0.078 0.922 14 C -0.130 4.130 15 N -0.508 5.508 16 Si 0.717 3.283 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.198 1.198 20 C -0.249 4.249 21 C -0.181 4.181 22 C -0.266 4.266 23 C -0.003 4.003 24 N -0.286 5.286 25 H 0.075 0.925 26 H 0.111 0.889 27 H 0.076 0.924 28 H 0.177 0.823 29 H 0.247 0.753 30 H 0.234 0.766 31 H 0.090 0.910 32 H 0.056 0.944 33 H 0.072 0.928 34 H 0.084 0.916 35 H 0.096 0.904 36 H 0.105 0.895 37 H 0.083 0.917 38 H 0.157 0.843 39 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -14.335 1.304 -9.219 17.094 hybrid contribution 1.240 1.870 0.246 2.257 sum -13.095 3.174 -8.973 16.188 Atomic orbital electron populations 1.22816 0.77573 1.02677 1.02262 1.86265 1.22569 1.24613 1.87821 1.19570 0.88835 0.84515 0.91621 1.21156 0.92045 0.99601 1.09130 1.17401 0.82633 0.92780 0.92420 1.42643 1.03758 1.31584 1.55381 1.16049 0.82340 0.82575 0.79518 1.90912 1.71685 1.31218 1.51744 1.45140 1.03601 1.29354 1.57697 1.20922 0.90523 0.87345 0.95597 1.19032 0.86595 0.95773 0.96279 1.20315 1.51170 0.90866 0.91503 0.92249 1.24980 0.94245 0.96405 0.97352 1.69981 1.48380 1.28077 1.04395 0.86643 0.78199 0.84536 0.78949 1.20655 1.21164 1.19834 1.23063 1.05588 1.04548 0.91694 1.22473 1.02677 0.96098 0.96820 1.21731 0.94814 0.98397 1.11708 1.22062 0.91890 0.93606 0.92739 1.67285 1.40942 0.98712 1.21687 0.92482 0.88865 0.92394 0.82264 0.75329 0.76600 0.91008 0.94430 0.92803 0.91622 0.90366 0.89542 0.91678 0.84347 0.82272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.43 10.38 101.05 1.05 1.48 16 2 O -0.31 -4.41 10.47 -18.76 -0.20 -4.61 16 3 C 0.33 5.06 7.48 -17.18 -0.13 4.93 16 4 C -0.20 -3.17 8.71 -39.09 -0.34 -3.51 16 5 C 0.25 3.64 6.35 -83.51 -0.53 3.11 16 6 N -0.69 -9.66 5.35 -14.09 -0.08 -9.74 16 7 C 0.70 12.80 8.43 -86.92 -0.73 12.07 16 8 O -0.58 -12.78 13.78 5.29 0.07 -12.71 16 9 N -0.71 -13.08 5.37 -65.23 -0.35 -13.43 16 10 C 0.18 3.91 5.55 -4.04 -0.02 3.89 16 11 C 0.02 0.54 1.53 -155.67 -0.24 0.30 16 12 C -0.50 -12.42 8.29 -34.44 -0.29 -12.70 16 13 H 0.06 1.43 7.81 -52.48 -0.41 1.02 16 14 C 0.07 1.93 5.43 -17.82 -0.10 1.84 16 15 N -0.87 -23.81 12.72 55.43 0.71 -23.10 16 16 Si 0.89 20.14 29.54 -169.99 -5.02 15.12 16 17 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 18 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 20 C -0.21 -4.23 9.93 -26.69 -0.27 -4.50 16 21 C -0.14 -3.17 9.26 -26.70 -0.25 -3.42 16 22 C -0.24 -2.78 10.05 -39.25 -0.39 -3.18 16 23 C 0.15 1.71 11.17 -17.62 -0.20 1.51 16 24 N -0.56 -7.62 9.21 -13.41 -0.12 -7.74 16 25 H 0.06 0.54 8.11 -51.93 -0.42 0.12 16 26 H 0.09 0.70 8.14 -51.92 -0.42 0.28 16 27 H 0.06 0.58 8.10 -51.93 -0.42 0.16 16 28 H 0.16 2.91 6.25 -52.49 -0.33 2.58 16 29 H 0.41 4.27 8.84 -40.82 -0.36 3.91 16 30 H 0.40 6.58 8.19 -40.82 -0.33 6.24 16 31 H 0.07 1.82 8.14 -51.93 -0.42 1.39 16 32 H 0.04 0.79 8.10 -51.93 -0.42 0.37 16 33 H 0.26 6.92 8.32 -40.82 -0.34 6.58 16 34 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 36 H 0.09 2.07 8.14 -51.93 -0.42 1.65 16 37 H 0.06 1.38 8.14 -51.92 -0.42 0.95 16 38 H 0.14 1.20 8.06 -52.49 -0.42 0.77 16 39 H 0.16 1.20 8.06 -52.48 -0.42 0.78 16 LS Contribution 339.03 15.07 5.11 5.11 Total: -1.00 -30.85 339.03 -7.52 -38.37 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: -5.21 Total: 10.91 kcal Atomic # 6 Polarization: 4.26 SS G_CDS: -2.43 Total: 1.83 kcal Atomic # 7 Polarization: -54.17 SS G_CDS: 0.16 Total: -54.01 kcal Atomic # 8 Polarization: -17.20 SS G_CDS: -0.12 Total: -17.32 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.85 -7.52 -38.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352504935.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.222 kcal (2) G-P(sol) polarization free energy of solvation -30.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds