Wall clock time and date at job start Tue Mar 31 2020 06:44:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35685 * 116.99658 * 2 1 4 4 C 1.38655 * 119.64607 * 179.97438 * 3 2 1 5 5 C 1.39135 * 119.02425 * 179.72359 * 4 3 2 6 6 N 1.39558 * 120.82299 * 180.29621 * 5 4 3 7 7 C 1.34771 * 120.00684 * 325.85321 * 6 5 4 8 8 O 1.21587 * 119.99558 * 4.68083 * 7 6 5 9 9 N 1.34777 * 120.00294 * 184.68225 * 7 6 5 10 10 C 1.46491 * 120.00025 * 180.02562 * 9 7 6 11 11 C 1.53003 * 109.47309 * 184.79000 * 10 9 7 12 12 C 1.50696 * 115.54781 * 56.18690 * 11 10 9 13 13 H 1.08009 * 119.99957 * 264.68085 * 12 11 10 14 14 C 1.37873 * 120.00605 * 84.68157 * 12 11 10 15 15 N 1.31517 * 119.99639 * 1.94104 * 14 12 11 16 16 Si 1.86798 * 120.00432 * 181.93854 * 14 12 11 17 17 H 1.48503 * 109.46812 * 90.00140 * 16 14 12 18 18 H 1.48495 * 109.47444 * 210.00047 * 16 14 12 19 19 H 1.48499 * 109.47117 * 330.00514 * 16 14 12 20 20 C 1.52998 * 117.49803 * 270.51709 * 11 10 9 21 21 C 1.52993 * 117.50165 * 201.85429 * 11 10 9 22 22 C 1.39566 * 118.34691 * 0.28248 * 5 4 3 23 23 C 1.37798 * 119.19625 * 359.97438 * 22 5 4 24 24 N 1.32059 * 120.91024 * 0.02562 * 23 22 5 25 25 H 1.09000 * 109.46988 * 60.00115 * 1 2 3 26 26 H 1.09008 * 109.46935 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47033 * 299.99698 * 1 2 3 28 28 H 1.08001 * 120.48877 * 359.97438 * 4 3 2 29 29 H 0.97004 * 119.99460 * 145.85166 * 6 5 4 30 30 H 0.96996 * 119.99706 * 359.97438 * 9 7 6 31 31 H 1.09004 * 109.47254 * 304.79142 * 10 9 7 32 32 H 1.09005 * 109.47533 * 64.79175 * 10 9 7 33 33 H 0.96994 * 120.00137 * 185.02272 * 15 14 12 34 34 H 1.08997 * 117.49912 * 359.97438 * 20 11 10 35 35 H 1.09003 * 117.49776 * 145.02190 * 20 11 10 36 36 H 1.09000 * 117.50242 * 214.97571 * 21 11 10 37 37 H 1.09008 * 117.50038 * 359.97438 * 21 11 10 38 38 H 1.07991 * 120.39953 * 180.02562 * 22 5 4 39 39 H 1.08003 * 119.54393 * 180.02562 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2090 0.0000 4 6 3.4300 1.2731 0.0005 5 6 4.0481 2.5196 -0.0053 6 7 5.4394 2.6278 -0.0112 7 6 6.1889 1.7189 0.6434 8 8 5.6592 0.7579 1.1671 9 7 7.5255 1.8752 0.7175 10 6 8.3402 0.8869 1.4285 11 6 9.7955 1.3578 1.4665 12 6 10.0227 2.7182 2.0738 13 1 10.0844 3.5896 1.4386 14 6 10.1518 2.8505 3.4400 15 7 10.1149 1.7851 4.2103 16 14 10.3792 4.5430 4.1972 17 1 9.0508 5.1251 4.5161 18 1 11.1797 4.4248 5.4423 19 1 11.0878 5.4246 3.2350 20 6 10.7034 0.9407 0.3079 21 6 10.8758 0.2970 1.6859 22 6 3.2420 3.6590 -0.0055 23 6 1.8718 3.5130 -0.0004 24 7 1.3173 2.3145 0.0051 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 4.0204 0.3688 0.0014 29 1 5.8671 3.3573 -0.4865 30 1 7.9481 2.6416 0.2994 31 1 7.9681 0.7741 2.4468 32 1 8.2819 -0.0714 0.9122 33 1 10.1323 1.8833 5.1750 34 1 10.2642 0.3305 -0.4812 35 1 11.4655 1.6501 -0.0149 36 1 11.7512 0.5831 2.2690 37 1 10.5499 -0.7366 1.8036 38 1 3.6868 4.6430 -0.0104 39 1 1.2427 4.3909 -0.0009 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352504935.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:31 Heat of formation + Delta-G solvation = -22.765540 kcal Electronic energy + Delta-G solvation = -22587.673273 eV Core-core repulsion = 19109.989781 eV Total energy + Delta-G solvation = -3477.683492 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.02920 -40.90551 -39.01913 -38.45618 -36.15610 -35.13968 -33.96360 -31.95248 -31.54351 -28.29435 -27.91382 -27.09171 -24.73719 -23.73706 -22.92394 -21.97267 -21.27848 -19.84228 -19.50801 -18.14545 -17.72161 -17.15376 -16.96608 -16.88129 -16.67481 -16.45861 -15.90458 -15.68887 -15.08658 -15.01067 -14.72155 -14.45758 -14.34664 -13.83189 -13.45945 -13.32752 -12.92244 -12.82190 -12.68279 -12.35904 -12.29367 -12.01208 -11.87584 -11.59728 -11.35399 -10.94948 -10.63734 -10.42225 -10.18869 -9.96410 -9.58197 -9.47922 -8.09442 -6.23010 0.16942 0.22760 1.42831 1.45452 1.48237 1.53201 2.00927 2.22090 2.43124 2.83083 3.15673 3.21831 3.43968 3.57456 4.00518 4.14701 4.20674 4.25478 4.45607 4.45990 4.54533 4.56888 4.68045 4.71400 4.74765 4.83664 4.97995 5.03286 5.11451 5.17027 5.30135 5.51716 5.59032 5.63299 5.69446 5.77979 5.96813 6.28151 6.36647 6.84960 6.88759 7.02061 7.45777 7.48021 8.98288 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.020981 B = 0.003585 C = 0.003324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.227576 B = 7808.968093 C = 8421.869903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.328 6.328 3 C 0.320 3.680 4 C -0.225 4.225 5 C 0.236 3.764 6 N -0.667 5.667 7 C 0.695 3.305 8 O -0.620 6.620 9 N -0.700 5.700 10 C 0.196 3.804 11 C 0.004 3.996 12 C -0.501 4.501 13 H 0.067 0.933 14 C 0.024 3.976 15 N -0.908 5.908 16 Si 0.948 3.052 17 H -0.281 1.281 18 H -0.293 1.293 19 H -0.261 1.261 20 C -0.176 4.176 21 C -0.157 4.157 22 C -0.228 4.228 23 C 0.157 3.843 24 N -0.564 5.564 25 H 0.064 0.936 26 H 0.118 0.882 27 H 0.057 0.943 28 H 0.128 0.872 29 H 0.430 0.570 30 H 0.412 0.588 31 H 0.027 0.973 32 H 0.041 0.959 33 H 0.257 0.743 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.063 0.937 37 H 0.069 0.931 38 H 0.176 0.824 39 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.274 5.214 -11.547 19.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.236 6.236 3 C 0.142 3.858 4 C -0.249 4.249 5 C 0.131 3.869 6 N -0.316 5.316 7 C 0.395 3.605 8 O -0.500 6.500 9 N -0.353 5.353 10 C 0.071 3.929 11 C 0.003 3.997 12 C -0.538 4.538 13 H 0.085 0.915 14 C -0.177 4.177 15 N -0.546 5.546 16 Si 0.774 3.226 17 H -0.207 1.207 18 H -0.220 1.220 19 H -0.185 1.185 20 C -0.213 4.213 21 C -0.195 4.195 22 C -0.250 4.250 23 C 0.001 3.999 24 N -0.290 5.290 25 H 0.082 0.918 26 H 0.136 0.864 27 H 0.076 0.924 28 H 0.146 0.854 29 H 0.270 0.730 30 H 0.248 0.752 31 H 0.046 0.954 32 H 0.059 0.941 33 H 0.066 0.934 34 H 0.109 0.891 35 H 0.104 0.896 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.193 0.807 39 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -15.319 3.913 -10.859 19.181 hybrid contribution 1.453 1.083 0.690 1.940 sum -13.866 4.996 -10.169 17.906 Atomic orbital electron populations 1.23066 0.75550 1.04505 1.02517 1.86233 1.24712 1.24841 1.87804 1.19637 0.88659 0.85302 0.92161 1.21054 0.92709 0.99468 1.11650 1.17675 0.82612 0.93293 0.93290 1.42306 1.03649 1.31016 1.54613 1.16163 0.82262 0.82660 0.79408 1.90900 1.72402 1.33191 1.53494 1.44868 1.03621 1.29263 1.57531 1.20489 0.90370 0.88416 0.93595 1.19063 0.87024 0.95183 0.98460 1.20665 1.49545 0.92042 0.91570 0.91456 1.25703 0.94528 0.99271 0.98159 1.70118 1.50331 1.29929 1.04190 0.85708 0.77834 0.81039 0.77972 1.20726 1.21967 1.18475 1.23052 1.03940 1.03480 0.90869 1.22399 1.01921 0.96403 0.98772 1.22103 0.94633 0.98753 1.09555 1.22891 0.92504 0.93999 0.90462 1.67399 1.40852 0.99066 1.21683 0.91775 0.86379 0.92448 0.85434 0.72978 0.75174 0.95424 0.94105 0.93383 0.89140 0.89575 0.91814 0.91220 0.80658 0.77844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.75 10.38 113.37 1.18 1.92 16 2 O -0.33 -9.66 10.47 -90.04 -0.94 -10.60 16 3 C 0.32 9.76 7.48 84.72 0.63 10.39 16 4 C -0.22 -7.48 8.71 22.59 0.20 -7.28 16 5 C 0.24 6.53 6.35 38.45 0.24 6.77 16 6 N -0.67 -17.94 5.35 -316.74 -1.70 -19.64 16 7 C 0.69 25.68 8.43 179.06 1.51 27.19 16 8 O -0.62 -28.47 13.78 -3.99 -0.05 -28.53 16 9 N -0.70 -25.62 5.37 -478.54 -2.57 -28.19 16 10 C 0.20 8.66 5.55 86.38 0.48 9.14 16 11 C 0.00 0.16 1.53 -52.93 -0.08 0.08 16 12 C -0.50 -24.45 8.29 25.60 0.21 -24.24 16 13 H 0.07 3.12 7.81 -2.91 -0.02 3.09 16 14 C 0.02 1.24 5.43 84.65 0.46 1.70 16 15 N -0.91 -50.74 12.72 21.45 0.27 -50.47 16 16 Si 0.95 41.19 29.54 68.60 2.03 43.21 16 17 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 18 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 19 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 20 C -0.18 -6.71 9.93 30.62 0.30 -6.40 16 21 C -0.16 -6.98 9.26 30.62 0.28 -6.70 16 22 C -0.23 -4.44 10.05 22.49 0.23 -4.21 16 23 C 0.16 2.96 11.17 84.55 0.94 3.90 16 24 N -0.56 -14.32 9.21 -309.16 -2.85 -17.17 16 25 H 0.06 1.14 8.11 -2.39 -0.02 1.13 16 26 H 0.12 1.65 8.14 -2.38 -0.02 1.63 16 27 H 0.06 1.11 8.10 -2.39 -0.02 1.09 16 28 H 0.13 5.02 6.25 -2.91 -0.02 5.00 16 29 H 0.43 7.85 8.84 -92.71 -0.82 7.03 16 30 H 0.41 12.88 8.19 -92.71 -0.76 12.13 16 31 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.04 1.75 8.10 -2.38 -0.02 1.73 16 33 H 0.26 13.99 8.32 -92.71 -0.77 13.22 16 34 H 0.09 3.02 8.14 -2.39 -0.02 3.00 16 35 H 0.09 3.16 8.14 -2.39 -0.02 3.14 16 36 H 0.06 3.11 8.14 -2.39 -0.02 3.09 16 37 H 0.07 2.98 8.14 -2.38 -0.02 2.96 16 38 H 0.18 2.10 8.06 -2.91 -0.02 2.08 16 39 H 0.20 1.98 8.06 -2.91 -0.02 1.95 16 Total: -1.00 -69.41 339.03 0.29 -69.12 By element: Atomic # 1 Polarization: 30.49 SS G_CDS: -0.49 Total: 30.00 kcal Atomic # 6 Polarization: 5.67 SS G_CDS: 6.59 Total: 12.25 kcal Atomic # 7 Polarization: -108.62 SS G_CDS: -6.84 Total: -115.46 kcal Atomic # 8 Polarization: -38.13 SS G_CDS: -1.00 Total: -39.13 kcal Atomic # 14 Polarization: 41.19 SS G_CDS: 2.03 Total: 43.21 kcal Total: -69.41 0.29 -69.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352504935.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.359 kcal (2) G-P(sol) polarization free energy of solvation -69.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds