Wall clock time and date at job start Tue Mar 31 2020 06:34:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46901 * 110.99551 * 2 1 4 4 C 1.46890 * 111.00485 * 123.95517 * 2 1 3 5 5 C 1.50696 * 109.47396 * 170.00134 * 4 2 1 6 6 O 1.21286 * 120.00005 * 359.97438 * 5 4 2 7 7 N 1.34783 * 120.00334 * 180.02562 * 5 4 2 8 8 C 1.39845 * 120.00221 * 184.59565 * 7 5 4 9 9 C 1.39036 * 119.98654 * 144.27954 * 8 7 5 10 10 C 1.37897 * 120.01430 * 180.28201 * 9 8 7 11 11 C 1.39160 * 119.98723 * 359.44242 * 10 9 8 12 12 N 1.39428 * 120.01899 * 180.30009 * 11 10 9 13 13 C 1.34777 * 119.99372 * 33.61022 * 12 11 10 14 14 O 1.21780 * 120.00456 * 5.09546 * 13 12 11 15 15 C 1.41726 * 119.99602 * 185.09112 * 13 12 11 16 16 H 1.07999 * 120.00506 * 5.54988 * 15 13 12 17 17 C 1.40141 * 120.00008 * 185.54672 * 15 13 12 18 18 N 1.30629 * 120.00071 * 354.44842 * 17 15 13 19 19 Si 1.86802 * 120.00255 * 174.44645 * 17 15 13 20 20 H 1.48500 * 109.47340 * 94.99289 * 19 17 15 21 21 H 1.48504 * 109.47128 * 214.99688 * 19 17 15 22 22 H 1.48507 * 109.46860 * 334.99130 * 19 17 15 23 23 C 1.39158 * 119.96770 * 0.28786 * 11 10 9 24 24 C 1.37899 * 119.98697 * 359.97438 * 23 11 10 25 25 H 1.08999 * 109.47002 * 296.03487 * 1 2 3 26 26 H 1.08993 * 109.47783 * 56.04489 * 1 2 3 27 27 H 1.09003 * 109.46659 * 176.04700 * 1 2 3 28 28 H 1.08995 * 109.47246 * 183.95250 * 3 2 1 29 29 H 1.08995 * 109.47751 * 303.95801 * 3 2 1 30 30 H 1.09010 * 109.46832 * 63.95924 * 3 2 1 31 31 H 1.09005 * 109.47104 * 50.00412 * 4 2 1 32 32 H 1.08996 * 109.47679 * 290.00452 * 4 2 1 33 33 H 0.96999 * 119.99292 * 4.60135 * 7 5 4 34 34 H 1.08007 * 119.99277 * 0.02562 * 9 8 7 35 35 H 1.08001 * 120.00967 * 179.72559 * 10 9 8 36 36 H 0.96994 * 120.00569 * 213.61749 * 12 11 10 37 37 H 0.96996 * 120.00505 * 179.97438 * 18 17 15 38 38 H 1.08001 * 120.00521 * 180.02562 * 23 11 10 39 39 H 1.08006 * 119.99282 * 180.02562 * 24 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7659 1.1375 5 6 3.4818 -0.9524 0.9727 6 8 4.0468 -0.4928 0.0028 7 7 4.1832 -1.6307 1.9026 8 6 5.5749 -1.7217 1.8001 9 6 6.3585 -1.7100 2.9485 10 6 7.7312 -1.7938 2.8479 11 6 8.3316 -1.9018 1.5971 12 7 9.7191 -1.9928 1.4949 13 6 10.4246 -2.6303 2.4500 14 8 9.8451 -3.2063 3.3530 15 6 11.8411 -2.6303 2.4035 16 1 12.3570 -2.0462 1.6557 17 6 12.5726 -3.3883 3.3279 18 7 11.9556 -4.0077 4.2985 19 14 14.4299 -3.5131 3.1720 20 1 15.0692 -2.4912 4.0394 21 1 14.8722 -4.8667 3.5932 22 1 14.8248 -3.2806 1.7594 23 6 7.5464 -1.9191 0.4483 24 6 6.1740 -1.8297 0.5501 25 1 -0.3633 0.4511 0.9234 26 1 -0.3634 0.5739 -0.8523 27 1 -0.3633 -1.0253 -0.0708 28 1 3.0826 1.3434 -0.0708 29 1 1.5897 1.9164 -0.8523 30 1 1.7043 1.8723 0.9234 31 1 1.5091 -1.7407 1.1755 32 1 1.7976 -0.2249 2.0627 33 1 3.7225 -2.0558 2.6428 34 1 5.8921 -1.6310 3.9195 35 1 8.3401 -1.7802 3.7398 36 1 10.1766 -1.5974 0.7365 37 1 12.4617 -4.5326 4.9381 38 1 8.0116 -2.0033 -0.5227 39 1 5.5645 -1.8436 -0.3414 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358551478.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:48 Heat of formation + Delta-G solvation = -27.524493 kcal Electronic energy + Delta-G solvation = -22221.949933 eV Core-core repulsion = 18744.060077 eV Total energy + Delta-G solvation = -3477.889856 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.39037 -38.92144 -37.42490 -36.48192 -34.62776 -32.99233 -32.28632 -30.30364 -29.47742 -27.80479 -27.71241 -26.07945 -23.20836 -22.45980 -21.63787 -20.43708 -19.65850 -17.74094 -17.38165 -16.95888 -16.25350 -15.97286 -15.54590 -15.31694 -14.90169 -14.74524 -14.12081 -13.84717 -13.65619 -13.18263 -12.98190 -12.75604 -12.65279 -12.44441 -12.36544 -12.05961 -11.95633 -11.94212 -11.67369 -11.30513 -11.13144 -10.85649 -10.61811 -10.34256 -10.02890 -9.57321 -9.05644 -8.66006 -8.60703 -8.35940 -7.70369 -6.78547 -6.38363 -4.89497 1.83103 2.07746 2.69241 2.99556 3.04932 3.12772 3.16758 3.79096 3.98364 4.25621 4.53648 4.64222 4.74614 4.78196 4.93527 4.99845 5.06981 5.34622 5.35629 5.43191 5.51950 5.62446 5.71621 5.88629 5.95813 6.04218 6.15547 6.49964 6.55998 6.69547 6.71268 6.87240 7.04516 7.15649 7.23754 7.46245 7.57349 7.89515 8.05226 8.21093 8.28347 8.80508 9.30836 10.38238 10.59294 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.058877 B = 0.002632 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 475.453818 B =10635.552599 C =10910.422572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.530 5.530 3 C 0.017 3.983 4 C 0.036 3.964 5 C 0.508 3.492 6 O -0.507 6.507 7 N -0.667 5.667 8 C 0.082 3.918 9 C -0.118 4.118 10 C -0.115 4.115 11 C 0.189 3.811 12 N -0.702 5.702 13 C 0.544 3.456 14 O -0.568 6.568 15 C -0.539 4.539 16 H 0.070 0.930 17 C 0.088 3.912 18 N -0.748 5.748 19 Si 0.912 3.088 20 H -0.271 1.271 21 H -0.277 1.277 22 H -0.262 1.262 23 C -0.165 4.165 24 C -0.092 4.092 25 H 0.026 0.974 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.091 0.909 29 H 0.068 0.932 30 H 0.020 0.980 31 H 0.105 0.895 32 H 0.065 0.935 33 H 0.404 0.596 34 H 0.117 0.883 35 H 0.141 0.859 36 H 0.392 0.608 37 H 0.272 0.728 38 H 0.119 0.881 39 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.162 6.399 -4.375 19.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.254 5.254 3 C -0.131 4.131 4 C -0.095 4.095 5 C 0.295 3.705 6 O -0.381 6.381 7 N -0.313 5.313 8 C -0.012 4.012 9 C -0.139 4.139 10 C -0.136 4.136 11 C 0.089 3.911 12 N -0.345 5.345 13 C 0.353 3.647 14 O -0.452 6.452 15 C -0.575 4.575 16 H 0.089 0.911 17 C -0.135 4.135 18 N -0.375 5.375 19 Si 0.736 3.264 20 H -0.196 1.196 21 H -0.202 1.202 22 H -0.186 1.186 23 C -0.187 4.187 24 C -0.112 4.112 25 H 0.044 0.956 26 H 0.091 0.909 27 H 0.088 0.912 28 H 0.109 0.891 29 H 0.086 0.914 30 H 0.039 0.961 31 H 0.123 0.877 32 H 0.083 0.917 33 H 0.239 0.761 34 H 0.135 0.865 35 H 0.159 0.841 36 H 0.225 0.775 37 H 0.083 0.917 38 H 0.137 0.863 39 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -17.926 5.984 -4.668 19.466 hybrid contribution 0.583 0.230 0.711 0.948 sum -17.343 6.214 -3.957 18.843 Atomic orbital electron populations 1.22427 0.86701 1.02441 1.00752 1.61627 1.07529 1.14884 1.41346 1.22600 1.03285 0.87372 0.99863 1.21984 0.92875 1.00865 0.93774 1.20557 0.89103 0.78041 0.82848 1.90673 1.70826 1.47674 1.28939 1.43294 1.05904 1.53640 1.28471 1.17505 0.81511 1.07832 0.94321 1.20707 0.93551 1.03263 0.96406 1.21144 0.93563 1.00748 0.98164 1.18035 0.85317 0.94551 0.93216 1.44178 1.03164 1.58941 1.28229 1.17036 0.88207 0.78650 0.80769 1.90650 1.71480 1.47309 1.35733 1.20055 0.90554 1.30061 1.16784 0.91143 1.25764 1.00486 0.93585 0.93646 1.70010 1.37024 1.21057 1.09427 0.86283 0.82300 0.78235 0.79589 1.19591 1.20195 1.18625 1.20817 0.93144 1.07287 0.97486 1.20827 0.94169 0.99755 0.96484 0.95591 0.90915 0.91205 0.89093 0.91358 0.96121 0.87741 0.91733 0.76089 0.86530 0.84107 0.77486 0.91678 0.86314 0.85185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.57 60.07 0.57 0.75 16 2 N -0.53 -5.30 4.76 -252.73 -1.20 -6.50 16 3 C 0.02 0.17 9.21 60.07 0.55 0.72 16 4 C 0.04 0.32 5.45 -4.98 -0.03 0.29 16 5 C 0.51 6.45 7.39 -10.98 -0.08 6.37 16 6 O -0.51 -8.34 11.80 5.55 0.07 -8.27 16 7 N -0.67 -8.24 5.33 -9.80 -0.05 -8.29 16 8 C 0.08 1.34 6.29 -83.61 -0.53 0.82 16 9 C -0.12 -2.07 9.96 -39.41 -0.39 -2.46 16 10 C -0.11 -2.45 8.64 -39.36 -0.34 -2.79 16 11 C 0.19 4.05 6.28 -83.72 -0.53 3.53 16 12 N -0.70 -16.08 5.31 -12.41 -0.07 -16.15 16 13 C 0.54 15.11 7.30 -14.93 -0.11 15.00 16 14 O -0.57 -17.63 12.58 5.12 0.06 -17.56 16 15 C -0.54 -14.69 9.31 -37.54 -0.35 -15.03 16 16 H 0.07 1.75 7.85 -52.49 -0.41 1.33 16 17 C 0.09 2.36 5.49 -17.35 -0.10 2.27 16 18 N -0.75 -21.46 11.75 55.56 0.65 -20.81 16 19 Si 0.91 19.31 29.56 -169.99 -5.03 14.29 16 20 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 21 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 22 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 23 C -0.17 -3.10 9.96 -39.36 -0.39 -3.49 16 24 C -0.09 -1.63 8.68 -39.41 -0.34 -1.97 16 25 H 0.03 0.15 8.14 -51.93 -0.42 -0.27 16 26 H 0.07 0.46 8.12 -51.93 -0.42 0.04 16 27 H 0.07 0.41 8.12 -51.93 -0.42 -0.01 16 28 H 0.09 1.16 5.88 -51.93 -0.31 0.85 16 29 H 0.07 0.61 8.12 -51.93 -0.42 0.19 16 30 H 0.02 0.18 8.14 -51.92 -0.42 -0.24 16 31 H 0.10 0.69 8.06 -51.93 -0.42 0.28 16 32 H 0.06 0.46 8.12 -51.93 -0.42 0.04 16 33 H 0.40 3.54 8.82 -40.82 -0.36 3.18 16 34 H 0.12 1.70 8.06 -52.48 -0.42 1.28 16 35 H 0.14 3.40 6.42 -52.49 -0.34 3.06 16 36 H 0.39 7.75 8.77 -40.82 -0.36 7.39 16 37 H 0.27 7.04 8.29 -40.82 -0.34 6.70 16 38 H 0.12 1.99 8.06 -52.49 -0.42 1.57 16 39 H 0.13 2.29 6.29 -52.48 -0.33 1.96 16 LS Contribution 331.20 15.07 4.99 4.99 Total: -1.00 -34.83 331.20 -7.66 -42.49 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: -5.03 Total: 11.81 kcal Atomic # 6 Polarization: 6.05 SS G_CDS: -2.05 Total: 4.00 kcal Atomic # 7 Polarization: -51.08 SS G_CDS: -0.67 Total: -51.74 kcal Atomic # 8 Polarization: -25.96 SS G_CDS: 0.13 Total: -25.83 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -5.03 Total: 14.29 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -34.83 -7.66 -42.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358551478.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.964 kcal (2) G-P(sol) polarization free energy of solvation -34.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds