Wall clock time and date at job start Tue Mar 31 2020 06:34:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46901 * 110.99551 * 2 1 4 4 C 1.46890 * 111.00485 * 123.95517 * 2 1 3 5 5 C 1.50696 * 109.47396 * 170.00134 * 4 2 1 6 6 O 1.21286 * 120.00005 * 359.97438 * 5 4 2 7 7 N 1.34783 * 120.00334 * 180.02562 * 5 4 2 8 8 C 1.39845 * 120.00221 * 184.59565 * 7 5 4 9 9 C 1.39036 * 119.98654 * 144.27954 * 8 7 5 10 10 C 1.37897 * 120.01430 * 180.28201 * 9 8 7 11 11 C 1.39160 * 119.98723 * 359.44242 * 10 9 8 12 12 N 1.39428 * 120.01899 * 180.30009 * 11 10 9 13 13 C 1.34777 * 119.99372 * 33.61022 * 12 11 10 14 14 O 1.21780 * 120.00456 * 5.09546 * 13 12 11 15 15 C 1.41726 * 119.99602 * 185.09112 * 13 12 11 16 16 H 1.07999 * 120.00506 * 5.54988 * 15 13 12 17 17 C 1.40141 * 120.00008 * 185.54672 * 15 13 12 18 18 N 1.30629 * 120.00071 * 354.44842 * 17 15 13 19 19 Si 1.86802 * 120.00255 * 174.44645 * 17 15 13 20 20 H 1.48500 * 109.47340 * 94.99289 * 19 17 15 21 21 H 1.48504 * 109.47128 * 214.99688 * 19 17 15 22 22 H 1.48507 * 109.46860 * 334.99130 * 19 17 15 23 23 C 1.39158 * 119.96770 * 0.28786 * 11 10 9 24 24 C 1.37899 * 119.98697 * 359.97438 * 23 11 10 25 25 H 1.08999 * 109.47002 * 296.03487 * 1 2 3 26 26 H 1.08993 * 109.47783 * 56.04489 * 1 2 3 27 27 H 1.09003 * 109.46659 * 176.04700 * 1 2 3 28 28 H 1.08995 * 109.47246 * 183.95250 * 3 2 1 29 29 H 1.08995 * 109.47751 * 303.95801 * 3 2 1 30 30 H 1.09010 * 109.46832 * 63.95924 * 3 2 1 31 31 H 1.09005 * 109.47104 * 50.00412 * 4 2 1 32 32 H 1.08996 * 109.47679 * 290.00452 * 4 2 1 33 33 H 0.96999 * 119.99292 * 4.60135 * 7 5 4 34 34 H 1.08007 * 119.99277 * 0.02562 * 9 8 7 35 35 H 1.08001 * 120.00967 * 179.72559 * 10 9 8 36 36 H 0.96994 * 120.00569 * 213.61749 * 12 11 10 37 37 H 0.96996 * 120.00505 * 179.97438 * 18 17 15 38 38 H 1.08001 * 120.00521 * 180.02562 * 23 11 10 39 39 H 1.08006 * 119.99282 * 180.02562 * 24 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7659 1.1375 5 6 3.4818 -0.9524 0.9727 6 8 4.0468 -0.4928 0.0028 7 7 4.1832 -1.6307 1.9026 8 6 5.5749 -1.7217 1.8001 9 6 6.3585 -1.7100 2.9485 10 6 7.7312 -1.7938 2.8479 11 6 8.3316 -1.9018 1.5971 12 7 9.7191 -1.9928 1.4949 13 6 10.4246 -2.6303 2.4500 14 8 9.8451 -3.2063 3.3530 15 6 11.8411 -2.6303 2.4035 16 1 12.3570 -2.0462 1.6557 17 6 12.5726 -3.3883 3.3279 18 7 11.9556 -4.0077 4.2985 19 14 14.4299 -3.5131 3.1720 20 1 15.0692 -2.4912 4.0394 21 1 14.8722 -4.8667 3.5932 22 1 14.8248 -3.2806 1.7594 23 6 7.5464 -1.9191 0.4483 24 6 6.1740 -1.8297 0.5501 25 1 -0.3633 0.4511 0.9234 26 1 -0.3634 0.5739 -0.8523 27 1 -0.3633 -1.0253 -0.0708 28 1 3.0826 1.3434 -0.0708 29 1 1.5897 1.9164 -0.8523 30 1 1.7043 1.8723 0.9234 31 1 1.5091 -1.7407 1.1755 32 1 1.7976 -0.2249 2.0627 33 1 3.7225 -2.0558 2.6428 34 1 5.8921 -1.6310 3.9195 35 1 8.3401 -1.7802 3.7398 36 1 10.1766 -1.5974 0.7365 37 1 12.4617 -4.5326 4.9381 38 1 8.0116 -2.0033 -0.5227 39 1 5.5645 -1.8436 -0.3414 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358551478.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:48 Heat of formation + Delta-G solvation = -54.669621 kcal Electronic energy + Delta-G solvation = -22223.127034 eV Core-core repulsion = 18744.060077 eV Total energy + Delta-G solvation = -3479.066957 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.57007 -40.49911 -38.87652 -37.55072 -36.05739 -34.80388 -34.18016 -31.81574 -30.66209 -29.22168 -28.41443 -27.74964 -24.45932 -23.73937 -22.99236 -21.81822 -21.14040 -19.46746 -18.69661 -18.10961 -17.89132 -17.52959 -16.82581 -16.15838 -16.05700 -15.78317 -15.72419 -15.20486 -15.09852 -14.71112 -14.56229 -14.10483 -14.00539 -13.62997 -13.59159 -13.22342 -13.12939 -12.92762 -12.78898 -12.68193 -12.67002 -12.51242 -12.29512 -12.02254 -11.41713 -10.97568 -10.72796 -10.28083 -9.99637 -9.69997 -9.29758 -8.41286 -8.39523 -7.00921 0.38209 0.55043 1.39084 1.40060 1.57027 1.63856 2.01972 2.21243 2.37190 2.91966 3.02673 3.09599 3.64874 3.72536 4.04098 4.12270 4.19177 4.33548 4.39132 4.48414 4.50309 4.63476 4.68785 4.71891 4.74412 5.05128 5.06678 5.13293 5.18500 5.22279 5.41029 5.56383 5.58077 5.89369 5.90152 5.99616 6.07283 6.18725 6.45779 6.55716 6.73821 7.24604 7.40485 8.38450 8.56624 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.058877 B = 0.002632 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 475.453818 B =10635.552599 C =10910.422572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.555 5.555 3 C 0.021 3.979 4 C 0.044 3.956 5 C 0.506 3.494 6 O -0.546 6.546 7 N -0.657 5.657 8 C 0.102 3.898 9 C -0.113 4.113 10 C -0.137 4.137 11 C 0.152 3.848 12 N -0.697 5.697 13 C 0.531 3.469 14 O -0.613 6.613 15 C -0.567 4.567 16 H 0.089 0.911 17 C 0.032 3.968 18 N -0.800 5.800 19 Si 1.001 2.999 20 H -0.261 1.261 21 H -0.270 1.270 22 H -0.249 1.249 23 C -0.156 4.156 24 C -0.098 4.098 25 H 0.039 0.961 26 H 0.074 0.926 27 H 0.081 0.919 28 H 0.059 0.941 29 H 0.073 0.927 30 H 0.033 0.967 31 H 0.134 0.866 32 H 0.090 0.910 33 H 0.425 0.575 34 H 0.147 0.853 35 H 0.103 0.897 36 H 0.404 0.596 37 H 0.279 0.721 38 H 0.137 0.863 39 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.650 6.676 -4.970 21.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.280 5.280 3 C -0.127 4.127 4 C -0.087 4.087 5 C 0.294 3.706 6 O -0.423 6.423 7 N -0.304 5.304 8 C 0.007 3.993 9 C -0.134 4.134 10 C -0.158 4.158 11 C 0.054 3.946 12 N -0.342 5.342 13 C 0.340 3.660 14 O -0.500 6.500 15 C -0.602 4.602 16 H 0.107 0.893 17 C -0.186 4.186 18 N -0.428 5.428 19 Si 0.820 3.180 20 H -0.185 1.185 21 H -0.195 1.195 22 H -0.172 1.172 23 C -0.178 4.178 24 C -0.119 4.119 25 H 0.057 0.943 26 H 0.093 0.907 27 H 0.100 0.900 28 H 0.078 0.922 29 H 0.092 0.908 30 H 0.051 0.949 31 H 0.151 0.849 32 H 0.108 0.892 33 H 0.264 0.736 34 H 0.165 0.835 35 H 0.121 0.879 36 H 0.239 0.761 37 H 0.090 0.910 38 H 0.155 0.845 39 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -19.492 6.285 -5.284 21.151 hybrid contribution 0.814 0.209 0.849 1.195 sum -18.679 6.494 -4.435 20.266 Atomic orbital electron populations 1.22466 0.84635 1.03445 1.01542 1.61589 1.09410 1.14656 1.42307 1.22482 1.01321 0.88129 1.00812 1.22040 0.89530 1.02637 0.94501 1.21393 0.90735 0.76687 0.81761 1.90669 1.71932 1.49047 1.30610 1.43271 1.04061 1.53714 1.29403 1.17548 0.83626 1.04749 0.93349 1.20862 0.92032 1.02198 0.98305 1.20993 0.95120 1.02797 0.96928 1.18239 0.84767 0.97317 0.94276 1.43736 1.03974 1.58719 1.27725 1.17378 0.88997 0.78613 0.80982 1.90602 1.72431 1.49330 1.37669 1.20576 0.90899 1.30926 1.17781 0.89278 1.27021 1.06653 0.92382 0.92567 1.70154 1.39860 1.22114 1.10666 0.84957 0.74241 0.78558 0.80285 1.18514 1.19483 1.17174 1.20963 0.93505 1.06004 0.97306 1.20997 0.93784 0.99709 0.97361 0.94283 0.90727 0.90027 0.92201 0.90775 0.94901 0.84852 0.89210 0.73629 0.83540 0.87851 0.76056 0.91036 0.84537 0.84609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.57 127.69 1.22 1.50 16 2 N -0.55 -9.59 4.76 -953.51 -4.53 -14.13 16 3 C 0.02 0.38 9.21 127.69 1.18 1.56 16 4 C 0.04 0.61 5.45 85.56 0.47 1.08 16 5 C 0.51 11.62 7.39 87.65 0.65 12.27 16 6 O -0.55 -17.31 11.80 -3.05 -0.04 -17.35 16 7 N -0.66 -14.47 5.33 -303.31 -1.62 -16.09 16 8 C 0.10 3.22 6.29 38.25 0.24 3.46 16 9 C -0.11 -3.91 9.96 22.38 0.22 -3.69 16 10 C -0.14 -6.09 8.64 22.41 0.19 -5.90 16 11 C 0.15 6.76 6.28 38.38 0.24 7.00 16 12 N -0.70 -33.24 5.31 -311.34 -1.65 -34.89 16 13 C 0.53 30.83 7.30 85.10 0.62 31.45 16 14 O -0.61 -40.22 12.58 -4.60 -0.06 -40.28 16 15 C -0.57 -31.63 9.31 23.59 0.22 -31.41 16 16 H 0.09 4.44 7.85 -2.91 -0.02 4.42 16 17 C 0.03 1.74 5.49 85.33 0.47 2.21 16 18 N -0.80 -47.48 11.75 21.85 0.26 -47.22 16 19 Si 1.00 39.68 29.56 68.60 2.03 41.71 16 20 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 21 H -0.27 -10.31 7.11 99.48 0.71 -9.60 16 22 H -0.25 -9.21 7.11 99.48 0.71 -8.50 16 23 C -0.16 -5.86 9.96 22.41 0.22 -5.64 16 24 C -0.10 -3.40 8.68 22.38 0.19 -3.20 16 25 H 0.04 0.32 8.14 -2.39 -0.02 0.30 16 26 H 0.07 0.75 8.12 -2.39 -0.02 0.73 16 27 H 0.08 0.67 8.12 -2.39 -0.02 0.65 16 28 H 0.06 1.50 5.88 -2.39 -0.01 1.48 16 29 H 0.07 1.23 8.12 -2.39 -0.02 1.21 16 30 H 0.03 0.51 8.14 -2.38 -0.02 0.49 16 31 H 0.13 1.15 8.06 -2.38 -0.02 1.13 16 32 H 0.09 0.87 8.12 -2.39 -0.02 0.85 16 33 H 0.43 5.94 8.82 -92.71 -0.82 5.12 16 34 H 0.15 4.06 8.06 -2.91 -0.02 4.04 16 35 H 0.10 5.38 6.42 -2.91 -0.02 5.36 16 36 H 0.40 16.49 8.77 -92.71 -0.81 15.67 16 37 H 0.28 14.88 8.29 -92.71 -0.77 14.11 16 38 H 0.14 4.51 8.06 -2.91 -0.02 4.49 16 39 H 0.14 4.63 6.29 -2.91 -0.02 4.61 16 Total: -1.00 -80.12 331.20 -0.01 -80.13 By element: Atomic # 1 Polarization: 37.97 SS G_CDS: -0.54 Total: 37.43 kcal Atomic # 6 Polarization: 4.55 SS G_CDS: 6.14 Total: 10.68 kcal Atomic # 7 Polarization: -104.78 SS G_CDS: -7.55 Total: -112.33 kcal Atomic # 8 Polarization: -57.53 SS G_CDS: -0.09 Total: -57.62 kcal Atomic # 14 Polarization: 39.68 SS G_CDS: 2.03 Total: 41.71 kcal Total: -80.12 -0.01 -80.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358551478.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.462 kcal (2) G-P(sol) polarization free energy of solvation -80.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds