Wall clock time and date at job start Tue Mar 31 2020 06:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46498 * 119.99938 * 2 1 4 4 C 1.34776 * 120.00179 * 180.02562 * 2 1 3 5 5 O 1.21516 * 119.99887 * 354.74403 * 4 2 1 6 6 C 1.48178 * 120.00329 * 174.74347 * 4 2 1 7 7 C 1.39083 * 119.69740 * 173.20260 * 6 4 2 8 8 C 1.39362 * 118.97341 * 180.27722 * 7 6 4 9 9 N 1.39555 * 120.83244 * 179.72948 * 8 7 6 10 10 C 1.34775 * 120.00330 * 213.27151 * 9 8 7 11 11 O 1.21283 * 119.99736 * 5.30807 * 10 9 8 12 12 C 1.50702 * 120.00387 * 185.30845 * 10 9 8 13 13 C 1.53000 * 109.47178 * 179.97438 * 12 10 9 14 14 C 1.50695 * 109.46812 * 180.02562 * 13 12 10 15 15 H 1.07999 * 120.00283 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99922 * 179.97438 * 14 13 12 17 17 N 1.31510 * 120.00015 * 179.97438 * 16 14 13 18 18 Si 1.86802 * 119.99761 * 0.02562 * 16 14 13 19 19 H 1.48493 * 109.47260 * 89.99857 * 18 16 14 20 20 H 1.48499 * 109.47028 * 209.99788 * 18 16 14 21 21 H 1.48498 * 109.47255 * 329.99468 * 18 16 14 22 22 C 1.39349 * 118.34045 * 359.46499 * 8 7 6 23 23 C 1.38291 * 119.27160 * 0.51826 * 22 8 7 24 24 N 1.31625 * 120.98440 * 359.74652 * 23 22 8 25 25 H 1.09004 * 109.47021 * 269.99776 * 1 2 3 26 26 H 1.08997 * 109.47052 * 30.00368 * 1 2 3 27 27 H 1.09006 * 109.47240 * 150.00139 * 1 2 3 28 28 H 1.09009 * 109.47104 * 264.21576 * 3 2 1 29 29 H 1.08990 * 109.47461 * 24.21613 * 3 2 1 30 30 H 1.09003 * 109.47096 * 144.22219 * 3 2 1 31 31 H 1.08000 * 120.51053 * 0.02562 * 7 6 4 32 32 H 0.97007 * 119.99623 * 33.26558 * 9 8 7 33 33 H 1.08990 * 109.47001 * 300.00071 * 12 10 9 34 34 H 1.09004 * 109.46296 * 60.00091 * 12 10 9 35 35 H 1.09004 * 109.46821 * 300.00129 * 13 12 10 36 36 H 1.08995 * 109.47088 * 60.00072 * 13 12 10 37 37 H 0.97001 * 119.99808 * 180.02562 * 17 16 14 38 38 H 1.07999 * 120.36510 * 180.28325 * 22 8 7 39 39 H 1.07998 * 119.51014 * 179.76146 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.1389 -1.1672 -0.0005 5 8 1.5352 -2.2174 0.0954 6 6 3.6160 -1.1699 -0.1181 7 6 4.3164 -2.3630 0.0241 8 6 5.7057 -2.3472 -0.0836 9 7 6.4475 -3.5208 0.0580 10 6 7.6767 -3.4789 0.6092 11 8 8.0996 -2.4395 1.0696 12 6 8.5256 -4.7232 0.6535 13 6 9.8631 -4.4045 1.3247 14 6 10.7122 -5.6488 1.3684 15 1 10.3357 -6.5741 0.9581 16 6 11.9701 -5.6055 1.9312 17 7 12.7109 -6.6914 1.9698 18 14 12.6215 -4.0047 2.6402 19 1 12.2479 -3.9102 4.0742 20 1 14.1005 -3.9717 2.5108 21 1 12.0342 -2.8598 1.8990 22 6 6.3354 -1.1312 -0.3416 23 6 5.5694 0.0129 -0.4708 24 7 4.2588 -0.0329 -0.3585 25 1 -0.3633 0.0000 1.0277 26 1 -0.3633 0.8899 -0.5139 27 1 -0.3634 -0.8900 -0.5138 28 1 2.4688 1.5316 -1.0225 29 1 1.5675 2.0520 0.4215 30 1 3.1012 1.1665 0.6008 31 1 3.7919 -3.2868 0.2189 32 1 6.0783 -4.3669 -0.2403 33 1 8.0083 -5.4958 1.2222 34 1 8.7042 -5.0774 -0.3618 35 1 10.3802 -3.6320 0.7555 36 1 9.6848 -4.0500 2.3398 37 1 13.5957 -6.6611 2.3661 38 1 7.4102 -1.0822 -0.4360 39 1 6.0538 0.9580 -0.6670 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360251785.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:20 Heat of formation + Delta-G solvation = -20.000770 kcal Electronic energy + Delta-G solvation = -22153.893252 eV Core-core repulsion = 18676.329650 eV Total energy + Delta-G solvation = -3477.563603 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.19537 -39.99999 -38.78085 -35.96463 -35.27687 -33.66402 -31.86148 -31.64432 -30.74275 -28.31330 -26.80880 -26.41873 -24.10636 -23.51219 -21.79549 -20.25087 -19.88617 -18.14645 -17.50587 -17.10181 -16.42222 -16.18664 -16.08136 -15.96067 -15.59979 -14.95450 -14.51994 -14.20496 -14.12191 -13.84084 -13.59734 -13.23780 -12.90947 -12.88158 -12.70316 -12.65749 -12.41276 -12.07886 -11.56436 -11.14233 -11.01022 -10.54103 -10.33259 -10.20118 -9.97143 -9.77251 -9.50101 -9.32937 -9.28915 -8.94663 -8.74976 -8.58708 -6.10567 -4.10507 0.47330 0.91927 2.44170 2.60096 2.80195 2.99831 3.31727 3.38900 3.47257 3.66313 3.82037 4.40741 4.43151 4.66391 4.81338 4.87249 4.96231 5.02221 5.10070 5.24427 5.27886 5.36772 5.44871 5.46384 5.51444 5.78457 5.80439 5.88552 5.93038 6.05986 6.24374 6.49454 6.54658 6.97025 7.21146 7.28161 7.28392 7.47645 7.67858 7.85959 8.16910 8.43049 8.91498 9.51524 11.02059 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.038718 B = 0.002766 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.010339 B =10119.186318 C =10575.191263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.605 5.605 3 C 0.089 3.911 4 C 0.572 3.428 5 O -0.535 6.535 6 C 0.091 3.909 7 C -0.143 4.143 8 C 0.198 3.802 9 N -0.680 5.680 10 C 0.512 3.488 11 O -0.514 6.514 12 C -0.121 4.121 13 C 0.001 3.999 14 C -0.528 4.528 15 H 0.074 0.926 16 C 0.070 3.930 17 N -0.901 5.901 18 Si 0.878 3.122 19 H -0.276 1.276 20 H -0.288 1.288 21 H -0.262 1.262 22 C -0.154 4.154 23 C 0.111 3.889 24 N -0.471 5.471 25 H 0.056 0.944 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.061 0.939 29 H 0.057 0.943 30 H 0.094 0.906 31 H 0.149 0.851 32 H 0.416 0.584 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.025 0.975 36 H 0.020 0.980 37 H 0.264 0.736 38 H 0.152 0.848 39 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.791 15.084 -6.765 27.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.338 5.338 3 C -0.053 4.053 4 C 0.359 3.641 5 O -0.411 6.411 6 C -0.047 4.047 7 C -0.167 4.167 8 C 0.093 3.907 9 N -0.327 5.327 10 C 0.303 3.697 11 O -0.387 6.387 12 C -0.161 4.161 13 C -0.037 4.037 14 C -0.566 4.566 15 H 0.092 0.908 16 C -0.132 4.132 17 N -0.539 5.539 18 Si 0.705 3.295 19 H -0.202 1.202 20 H -0.214 1.214 21 H -0.186 1.186 22 C -0.176 4.176 23 C -0.047 4.047 24 N -0.186 5.186 25 H 0.075 0.925 26 H 0.090 0.910 27 H 0.095 0.905 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.113 0.887 31 H 0.167 0.833 32 H 0.253 0.747 33 H 0.111 0.889 34 H 0.112 0.888 35 H 0.043 0.957 36 H 0.039 0.961 37 H 0.074 0.926 38 H 0.170 0.830 39 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -22.062 15.909 -6.391 27.941 hybrid contribution 0.798 -0.396 0.361 0.962 sum -21.264 15.513 -6.030 27.003 Atomic orbital electron populations 1.21700 0.78825 1.03179 1.02048 1.47586 1.07036 1.06868 1.72292 1.22151 0.96984 0.83047 1.03125 1.17931 0.85831 0.83562 0.76775 1.90780 1.68915 1.31282 1.50153 1.20692 0.93785 0.89514 1.00750 1.21814 0.92618 1.00171 1.02075 1.18002 0.90326 0.88174 0.94167 1.43931 1.17842 1.08791 1.62119 1.21967 0.80057 0.92696 0.75015 1.90683 1.71048 1.33101 1.43831 1.21751 0.97484 0.92827 1.04001 1.19396 0.90436 0.97856 0.95964 1.21058 0.99946 0.95686 1.39936 0.90821 1.24974 0.96663 0.96290 0.95259 1.69903 1.10832 1.27913 1.45262 0.86791 0.77863 0.84780 0.80074 1.20206 1.21359 1.18585 1.22443 1.03182 0.92290 0.99705 1.22730 0.88700 0.98368 0.94896 1.68020 1.10604 1.26947 1.13010 0.92512 0.90965 0.90549 0.92020 0.92399 0.88737 0.83297 0.74674 0.88939 0.88789 0.95688 0.96135 0.92601 0.83019 0.81625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.63 10.37 59.85 0.62 1.25 16 2 N -0.61 -5.98 3.27 -190.52 -0.62 -6.60 16 3 C 0.09 0.68 9.11 59.85 0.54 1.23 16 4 C 0.57 7.23 7.64 -12.18 -0.09 7.13 16 5 O -0.53 -8.07 15.97 5.35 0.09 -7.98 16 6 C 0.09 1.11 6.56 -83.05 -0.54 0.56 16 7 C -0.14 -1.73 9.58 -38.85 -0.37 -2.11 16 8 C 0.20 2.51 6.31 -83.51 -0.53 1.98 16 9 N -0.68 -8.46 5.35 -9.72 -0.05 -8.51 16 10 C 0.51 8.35 7.59 -10.99 -0.08 8.26 16 11 O -0.51 -10.08 13.74 5.55 0.08 -10.01 16 12 C -0.12 -2.11 5.64 -27.88 -0.16 -2.27 16 13 C 0.00 0.03 3.33 -27.89 -0.09 -0.06 16 14 C -0.53 -14.54 9.66 -34.44 -0.33 -14.87 16 15 H 0.07 2.12 7.99 -52.49 -0.42 1.70 16 16 C 0.07 2.01 5.47 -17.82 -0.10 1.92 16 17 N -0.90 -27.30 13.96 55.43 0.77 -26.53 16 18 Si 0.88 21.87 27.47 -169.99 -4.67 17.20 16 19 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 21 H -0.26 -6.41 6.54 56.52 0.37 -6.04 16 22 C -0.15 -1.91 8.74 -39.15 -0.34 -2.25 16 23 C 0.11 1.15 11.17 -17.62 -0.20 0.95 16 24 N -0.47 -5.15 6.17 -9.88 -0.06 -5.21 16 25 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 26 H 0.07 0.35 8.07 -51.93 -0.42 -0.07 16 27 H 0.08 0.64 7.50 -51.93 -0.39 0.25 16 28 H 0.06 0.46 7.98 -51.92 -0.41 0.04 16 29 H 0.06 0.32 8.03 -51.93 -0.42 -0.10 16 30 H 0.09 0.83 5.81 -51.93 -0.30 0.53 16 31 H 0.15 1.69 7.65 -52.49 -0.40 1.29 16 32 H 0.42 3.81 8.82 -40.82 -0.36 3.45 16 33 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 34 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 35 H 0.02 0.60 7.16 -51.93 -0.37 0.23 16 36 H 0.02 0.50 7.53 -51.93 -0.39 0.11 16 37 H 0.26 7.51 8.31 -40.82 -0.34 7.18 16 38 H 0.15 2.05 6.54 -52.49 -0.34 1.70 16 39 H 0.17 1.18 8.06 -52.49 -0.42 0.76 16 LS Contribution 331.72 15.07 5.00 5.00 Total: -1.00 -34.62 331.72 -6.23 -40.85 By element: Atomic # 1 Polarization: 5.14 SS G_CDS: -5.09 Total: 0.06 kcal Atomic # 6 Polarization: 3.40 SS G_CDS: -1.67 Total: 1.73 kcal Atomic # 7 Polarization: -46.89 SS G_CDS: 0.04 Total: -46.85 kcal Atomic # 8 Polarization: -18.15 SS G_CDS: 0.16 Total: -17.99 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.67 Total: 17.20 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -34.62 -6.23 -40.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360251785.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.850 kcal (2) G-P(sol) polarization free energy of solvation -34.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds