Wall clock time and date at job start Tue Mar 31 2020 06:36:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46498 * 119.99938 * 2 1 4 4 C 1.34776 * 120.00179 * 180.02562 * 2 1 3 5 5 O 1.21516 * 119.99887 * 354.74403 * 4 2 1 6 6 C 1.48178 * 120.00329 * 174.74347 * 4 2 1 7 7 C 1.39083 * 119.69740 * 173.20260 * 6 4 2 8 8 C 1.39362 * 118.97341 * 180.27722 * 7 6 4 9 9 N 1.39555 * 120.83244 * 179.72948 * 8 7 6 10 10 C 1.34775 * 120.00330 * 213.27151 * 9 8 7 11 11 O 1.21283 * 119.99736 * 5.30807 * 10 9 8 12 12 C 1.50702 * 120.00387 * 185.30845 * 10 9 8 13 13 C 1.53000 * 109.47178 * 179.97438 * 12 10 9 14 14 C 1.50695 * 109.46812 * 180.02562 * 13 12 10 15 15 H 1.07999 * 120.00283 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99922 * 179.97438 * 14 13 12 17 17 N 1.31510 * 120.00015 * 179.97438 * 16 14 13 18 18 Si 1.86802 * 119.99761 * 0.02562 * 16 14 13 19 19 H 1.48493 * 109.47260 * 89.99857 * 18 16 14 20 20 H 1.48499 * 109.47028 * 209.99788 * 18 16 14 21 21 H 1.48498 * 109.47255 * 329.99468 * 18 16 14 22 22 C 1.39349 * 118.34045 * 359.46499 * 8 7 6 23 23 C 1.38291 * 119.27160 * 0.51826 * 22 8 7 24 24 N 1.31625 * 120.98440 * 359.74652 * 23 22 8 25 25 H 1.09004 * 109.47021 * 269.99776 * 1 2 3 26 26 H 1.08997 * 109.47052 * 30.00368 * 1 2 3 27 27 H 1.09006 * 109.47240 * 150.00139 * 1 2 3 28 28 H 1.09009 * 109.47104 * 264.21576 * 3 2 1 29 29 H 1.08990 * 109.47461 * 24.21613 * 3 2 1 30 30 H 1.09003 * 109.47096 * 144.22219 * 3 2 1 31 31 H 1.08000 * 120.51053 * 0.02562 * 7 6 4 32 32 H 0.97007 * 119.99623 * 33.26558 * 9 8 7 33 33 H 1.08990 * 109.47001 * 300.00071 * 12 10 9 34 34 H 1.09004 * 109.46296 * 60.00091 * 12 10 9 35 35 H 1.09004 * 109.46821 * 300.00129 * 13 12 10 36 36 H 1.08995 * 109.47088 * 60.00072 * 13 12 10 37 37 H 0.97001 * 119.99808 * 180.02562 * 17 16 14 38 38 H 1.07999 * 120.36510 * 180.28325 * 22 8 7 39 39 H 1.07998 * 119.51014 * 179.76146 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.1389 -1.1672 -0.0005 5 8 1.5352 -2.2174 0.0954 6 6 3.6160 -1.1699 -0.1181 7 6 4.3164 -2.3630 0.0241 8 6 5.7057 -2.3472 -0.0836 9 7 6.4475 -3.5208 0.0580 10 6 7.6767 -3.4789 0.6092 11 8 8.0996 -2.4395 1.0696 12 6 8.5256 -4.7232 0.6535 13 6 9.8631 -4.4045 1.3247 14 6 10.7122 -5.6488 1.3684 15 1 10.3357 -6.5741 0.9581 16 6 11.9701 -5.6055 1.9312 17 7 12.7109 -6.6914 1.9698 18 14 12.6215 -4.0047 2.6402 19 1 12.2479 -3.9102 4.0742 20 1 14.1005 -3.9717 2.5108 21 1 12.0342 -2.8598 1.8990 22 6 6.3354 -1.1312 -0.3416 23 6 5.5694 0.0129 -0.4708 24 7 4.2588 -0.0329 -0.3585 25 1 -0.3633 0.0000 1.0277 26 1 -0.3633 0.8899 -0.5139 27 1 -0.3634 -0.8900 -0.5138 28 1 2.4688 1.5316 -1.0225 29 1 1.5675 2.0520 0.4215 30 1 3.1012 1.1665 0.6008 31 1 3.7919 -3.2868 0.2189 32 1 6.0783 -4.3669 -0.2403 33 1 8.0083 -5.4958 1.2222 34 1 8.7042 -5.0774 -0.3618 35 1 10.3802 -3.6320 0.7555 36 1 9.6848 -4.0500 2.3398 37 1 13.5957 -6.6611 2.3661 38 1 7.4102 -1.0822 -0.4360 39 1 6.0538 0.9580 -0.6670 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360251785.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:19 Heat of formation + Delta-G solvation = -44.200239 kcal Electronic energy + Delta-G solvation = -22154.942620 eV Core-core repulsion = 18676.329650 eV Total energy + Delta-G solvation = -3478.612970 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.17307 -41.08496 -39.79546 -36.86950 -36.33963 -35.57348 -33.51011 -32.63027 -31.97922 -28.96547 -28.20851 -27.52985 -25.10942 -24.52385 -23.24554 -21.62867 -20.91824 -19.37646 -18.93469 -18.18722 -17.76110 -17.17938 -17.00494 -16.91228 -16.65763 -16.31590 -16.01538 -15.47969 -15.03433 -14.96312 -14.69256 -14.65237 -14.38342 -14.07833 -13.56721 -13.42704 -13.37070 -13.16991 -12.93749 -12.79369 -12.19220 -12.11304 -11.99091 -11.77321 -11.49041 -11.41648 -11.12675 -10.78195 -10.42317 -10.32646 -9.79155 -9.68172 -8.31225 -6.34684 -0.46691 -0.01976 1.34530 1.36814 1.39448 1.50147 1.65276 1.74418 2.02937 2.34948 2.74960 2.98612 3.04805 3.58558 3.63939 3.84359 3.94820 4.16482 4.33924 4.39014 4.43905 4.44956 4.49559 4.54843 4.61828 4.88341 4.90387 4.91588 4.96531 5.11202 5.20936 5.33715 5.42425 5.49253 5.60010 5.61155 6.16912 6.19525 6.26713 6.60185 6.72209 6.97287 6.98261 7.30788 8.84337 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.038718 B = 0.002766 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.010339 B =10119.186318 C =10575.191263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.602 5.602 3 C 0.088 3.912 4 C 0.562 3.438 5 O -0.570 6.570 6 C 0.081 3.919 7 C -0.143 4.143 8 C 0.183 3.817 9 N -0.662 5.662 10 C 0.522 3.478 11 O -0.550 6.550 12 C -0.115 4.115 13 C 0.004 3.996 14 C -0.530 4.530 15 H 0.051 0.949 16 C 0.011 3.989 17 N -0.944 5.944 18 Si 0.939 3.061 19 H -0.271 1.271 20 H -0.281 1.281 21 H -0.256 1.256 22 C -0.163 4.163 23 C 0.120 3.880 24 N -0.461 5.461 25 H 0.063 0.937 26 H 0.103 0.897 27 H 0.063 0.937 28 H 0.067 0.933 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.153 0.847 32 H 0.432 0.568 33 H 0.109 0.891 34 H 0.112 0.888 35 H 0.016 0.984 36 H 0.011 0.989 37 H 0.267 0.733 38 H 0.142 0.858 39 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.207 17.442 -7.123 29.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.332 5.332 3 C -0.054 4.054 4 C 0.350 3.650 5 O -0.450 6.450 6 C -0.057 4.057 7 C -0.167 4.167 8 C 0.080 3.920 9 N -0.309 5.309 10 C 0.312 3.688 11 O -0.426 6.426 12 C -0.154 4.154 13 C -0.034 4.034 14 C -0.568 4.568 15 H 0.069 0.931 16 C -0.186 4.186 17 N -0.585 5.585 18 Si 0.764 3.236 19 H -0.196 1.196 20 H -0.207 1.207 21 H -0.180 1.180 22 C -0.186 4.186 23 C -0.038 4.038 24 N -0.175 5.175 25 H 0.082 0.918 26 H 0.122 0.878 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.104 0.896 30 H 0.102 0.898 31 H 0.171 0.829 32 H 0.272 0.728 33 H 0.127 0.873 34 H 0.130 0.870 35 H 0.034 0.966 36 H 0.029 0.971 37 H 0.076 0.924 38 H 0.159 0.841 39 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -23.537 18.286 -6.776 30.566 hybrid contribution 1.137 -1.102 0.422 1.638 sum -22.401 17.184 -6.354 28.939 Atomic orbital electron populations 1.21890 0.77377 1.04093 1.02793 1.47793 1.08166 1.06786 1.70481 1.22252 0.97049 0.82596 1.03475 1.18088 0.86030 0.83983 0.76942 1.90754 1.69492 1.32553 1.52196 1.20813 0.93945 0.89924 1.00993 1.21837 0.92305 1.00568 1.01972 1.18086 0.90513 0.88215 0.95218 1.43558 1.16534 1.09811 1.61039 1.21515 0.80868 0.91474 0.74926 1.90674 1.72159 1.34024 1.45791 1.21549 0.95162 0.93995 1.04721 1.19249 0.92777 0.95444 0.95947 1.21420 1.00343 0.96441 1.38562 0.93123 1.25834 0.97305 0.99438 0.96044 1.70027 1.11476 1.30068 1.46912 0.85814 0.77465 0.80888 0.79458 1.19618 1.20667 1.17950 1.22526 1.02909 0.92975 1.00203 1.23249 0.88315 0.99045 0.93240 1.68145 1.10739 1.26166 1.12487 0.91830 0.87832 0.91862 0.91453 0.89634 0.89816 0.82929 0.72786 0.87303 0.86976 0.96554 0.97069 0.92423 0.84059 0.78230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.02 10.37 127.77 1.33 2.35 16 2 N -0.60 -10.75 3.27 -874.97 -2.86 -13.61 16 3 C 0.09 1.10 9.11 127.77 1.16 2.26 16 4 C 0.56 13.70 7.64 86.88 0.66 14.37 16 5 O -0.57 -17.15 15.97 -3.77 -0.06 -17.21 16 6 C 0.08 1.88 6.56 41.84 0.27 2.15 16 7 C -0.14 -3.33 9.58 22.74 0.22 -3.12 16 8 C 0.18 4.43 6.31 38.45 0.24 4.67 16 9 N -0.66 -15.51 5.35 -303.06 -1.62 -17.13 16 10 C 0.52 16.36 7.59 87.66 0.67 17.03 16 11 O -0.55 -21.16 13.74 -3.04 -0.04 -21.21 16 12 C -0.11 -3.87 5.64 29.85 0.17 -3.70 16 13 C 0.00 0.18 3.33 29.85 0.10 0.28 16 14 C -0.53 -29.35 9.66 25.60 0.25 -29.10 16 15 H 0.05 2.96 7.99 -2.91 -0.02 2.94 16 16 C 0.01 0.66 5.47 84.66 0.46 1.13 16 17 N -0.94 -58.12 13.96 21.45 0.30 -57.82 16 18 Si 0.94 45.20 27.47 68.60 1.88 47.08 16 19 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 20 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 21 H -0.26 -11.95 6.54 99.48 0.65 -11.30 16 22 C -0.16 -3.83 8.74 22.55 0.20 -3.63 16 23 C 0.12 2.20 11.17 84.74 0.95 3.14 16 24 N -0.46 -9.12 6.17 -185.17 -1.14 -10.26 16 25 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 26 H 0.10 0.67 8.07 -2.39 -0.02 0.65 16 27 H 0.06 1.00 7.50 -2.38 -0.02 0.98 16 28 H 0.07 0.80 7.98 -2.38 -0.02 0.78 16 29 H 0.09 0.62 8.03 -2.39 -0.02 0.60 16 30 H 0.08 1.27 5.81 -2.39 -0.01 1.26 16 31 H 0.15 3.37 7.65 -2.91 -0.02 3.35 16 32 H 0.43 7.14 8.82 -92.70 -0.82 6.33 16 33 H 0.11 3.32 8.14 -2.39 -0.02 3.30 16 34 H 0.11 3.37 8.14 -2.39 -0.02 3.35 16 35 H 0.02 0.77 7.16 -2.39 -0.02 0.76 16 36 H 0.01 0.53 7.53 -2.39 -0.02 0.51 16 37 H 0.27 15.39 8.31 -92.71 -0.77 14.61 16 38 H 0.14 3.68 6.54 -2.91 -0.02 3.66 16 39 H 0.20 2.18 8.06 -2.91 -0.02 2.16 16 Total: -1.00 -75.40 331.72 3.33 -72.07 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: 0.21 Total: 10.26 kcal Atomic # 6 Polarization: 1.16 SS G_CDS: 6.67 Total: 7.83 kcal Atomic # 7 Polarization: -93.50 SS G_CDS: -5.33 Total: -98.83 kcal Atomic # 8 Polarization: -38.31 SS G_CDS: -0.10 Total: -38.41 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 1.88 Total: 47.08 kcal Total: -75.40 3.33 -72.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360251785.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.865 kcal (2) G-P(sol) polarization free energy of solvation -75.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds