Wall clock time and date at job start Tue Mar 31 2020 06:36:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46502 * 120.00049 * 2 1 4 4 C 1.34773 * 120.00172 * 180.02562 * 2 1 3 5 5 O 1.21508 * 119.99821 * 355.35686 * 4 2 1 6 6 C 1.48154 * 120.00180 * 175.35850 * 4 2 1 7 7 C 1.39984 * 120.88820 * 319.45043 * 6 4 2 8 8 C 1.37995 * 119.15492 * 180.02562 * 7 6 4 9 9 N 1.31882 * 120.99751 * 0.02562 * 8 7 6 10 10 C 1.32283 * 121.95215 * 359.65801 * 9 8 7 11 11 N 1.39424 * 119.63227 * 180.31827 * 10 9 8 12 12 C 1.34778 * 119.99875 * 6.23327 * 11 10 9 13 13 O 1.21279 * 120.00534 * 3.55080 * 12 11 10 14 14 C 1.50698 * 119.99866 * 183.55571 * 12 11 10 15 15 C 1.53001 * 109.47277 * 179.97438 * 14 12 11 16 16 C 1.50700 * 109.46951 * 179.97438 * 15 14 12 17 17 H 1.08001 * 120.00733 * 0.02562 * 16 15 14 18 18 C 1.37884 * 120.00002 * 180.02562 * 16 15 14 19 19 N 1.31519 * 119.99347 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00322 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47143 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47437 * 119.99897 * 20 18 16 23 23 H 1.48501 * 109.46915 * 239.99932 * 20 18 16 24 24 C 1.39011 * 120.73089 * 0.63096 * 10 9 8 25 25 H 1.09003 * 109.47002 * 270.00350 * 1 2 3 26 26 H 1.09005 * 109.47286 * 29.99591 * 1 2 3 27 27 H 1.08995 * 109.47533 * 149.99996 * 1 2 3 28 28 H 1.08994 * 109.47248 * 174.31201 * 3 2 1 29 29 H 1.09004 * 109.47060 * 294.31114 * 3 2 1 30 30 H 1.08998 * 109.47128 * 54.30838 * 3 2 1 31 31 H 1.07994 * 120.41950 * 359.97438 * 7 6 4 32 32 H 1.08004 * 119.50281 * 179.97438 * 8 7 6 33 33 H 0.96993 * 119.99980 * 186.23063 * 11 10 9 34 34 H 1.08999 * 109.47448 * 299.99748 * 14 12 11 35 35 H 1.09001 * 109.47559 * 59.99396 * 14 12 11 36 36 H 1.08997 * 109.47451 * 300.00125 * 15 14 12 37 37 H 1.09005 * 109.46879 * 60.00401 * 15 14 12 38 38 H 0.96999 * 119.99454 * 180.02562 * 19 18 16 39 39 H 1.07997 * 120.53019 * 179.67849 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1389 -1.1672 -0.0005 5 8 1.5343 -2.2178 0.0842 6 6 3.6168 -1.1692 -0.1043 7 6 4.2776 -0.2894 -0.9697 8 6 5.6555 -0.3223 -1.0384 9 7 6.3522 -1.1674 -0.3038 10 6 5.7712 -2.0125 0.5318 11 7 6.5553 -2.8807 1.2903 12 6 7.8985 -2.7720 1.2648 13 8 8.4228 -1.8790 0.6336 14 6 8.7488 -3.7602 2.0208 15 6 10.2266 -3.4146 1.8269 16 6 11.0769 -4.4024 2.5834 17 1 10.6101 -5.1975 3.1458 18 6 12.4510 -4.2912 2.5576 19 7 13.0195 -3.3227 1.8731 20 14 13.5050 -5.5161 3.4946 21 1 12.6293 -6.5008 4.1793 22 1 14.4013 -6.2252 2.5464 23 1 14.3224 -4.7956 4.5036 24 6 4.3873 -2.0488 0.6574 25 1 -0.3633 0.0001 1.0277 26 1 -0.3634 0.8901 -0.5138 27 1 -0.3634 -0.8899 -0.5138 28 1 3.2647 1.0721 0.1018 29 1 2.0128 1.7949 -0.9366 30 1 1.8599 1.8832 0.8346 31 1 3.7162 0.4056 -1.5763 32 1 6.1711 0.3538 -1.7044 33 1 6.1342 -3.5629 1.8362 34 1 8.5012 -3.7161 3.0813 35 1 8.5588 -4.7655 1.6448 36 1 10.4741 -3.4589 0.7664 37 1 10.4170 -2.4092 2.2028 38 1 13.9862 -3.2447 1.8546 39 1 3.9161 -2.7436 1.3368 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360360022.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:36 Heat of formation + Delta-G solvation = -14.323952 kcal Electronic energy + Delta-G solvation = -22065.387802 eV Core-core repulsion = 18588.070365 eV Total energy + Delta-G solvation = -3477.317437 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.14553 -39.91540 -38.55657 -36.05846 -34.75748 -33.49756 -32.84828 -31.21983 -30.09294 -28.45015 -27.03999 -25.92728 -24.21747 -23.45942 -21.89986 -20.30152 -19.54332 -18.23771 -17.19326 -16.89380 -16.48189 -16.32941 -15.99593 -15.70717 -15.31859 -14.98348 -14.51051 -14.35040 -14.07335 -13.76393 -13.46920 -13.32426 -13.01755 -12.99001 -12.54698 -12.34700 -12.20878 -12.10592 -11.21052 -10.97064 -10.69422 -10.59654 -10.52646 -10.01949 -9.98391 -9.85545 -9.61713 -9.19226 -9.12491 -8.82802 -8.35673 -8.28232 -5.97770 -4.02312 0.65515 0.93703 2.34527 2.53309 3.03212 3.11800 3.32124 3.39430 3.42622 3.80431 3.96390 4.37835 4.47577 4.58804 4.76178 4.78248 4.79906 4.86483 4.92821 5.13431 5.27822 5.33935 5.37442 5.38469 5.45262 5.58825 5.76320 5.93163 6.13286 6.14859 6.15675 6.69151 6.79789 6.81248 7.34845 7.66071 7.72343 7.82146 8.04002 8.05278 8.35386 8.64780 9.05966 9.61429 11.13181 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.044974 B = 0.002559 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.427095 B =10938.907523 C =11357.618734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.614 5.614 3 C 0.060 3.940 4 C 0.562 3.438 5 O -0.527 6.527 6 C -0.059 4.059 7 C -0.194 4.194 8 C 0.137 3.863 9 N -0.462 5.462 10 C 0.376 3.624 11 N -0.669 5.669 12 C 0.498 3.502 13 O -0.463 6.463 14 C -0.128 4.128 15 C 0.036 3.964 16 C -0.527 4.527 17 H 0.057 0.943 18 C 0.058 3.942 19 N -0.889 5.889 20 Si 0.893 3.107 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 C -0.165 4.165 25 H 0.057 0.943 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.094 0.906 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.141 0.859 32 H 0.165 0.835 33 H 0.416 0.584 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.025 0.975 37 H 0.025 0.975 38 H 0.261 0.739 39 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.365 9.074 -3.999 27.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.348 5.348 3 C -0.083 4.083 4 C 0.350 3.650 5 O -0.403 6.403 6 C -0.070 4.070 7 C -0.216 4.216 8 C -0.021 4.021 9 N -0.177 5.177 10 C 0.143 3.857 11 N -0.317 5.317 12 C 0.285 3.715 13 O -0.330 6.330 14 C -0.168 4.168 15 C -0.001 4.001 16 C -0.566 4.566 17 H 0.075 0.925 18 C -0.144 4.144 19 N -0.527 5.527 20 Si 0.721 3.279 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.210 1.210 24 C -0.189 4.189 25 H 0.076 0.924 26 H 0.091 0.909 27 H 0.096 0.904 28 H 0.113 0.887 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.159 0.841 32 H 0.182 0.818 33 H 0.253 0.747 34 H 0.101 0.899 35 H 0.102 0.898 36 H 0.044 0.956 37 H 0.043 0.957 38 H 0.070 0.930 39 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -24.104 9.180 -4.473 26.178 hybrid contribution -0.581 -0.847 0.807 1.306 sum -24.685 8.333 -3.666 26.310 Atomic orbital electron populations 1.21668 0.78427 1.03307 1.02225 1.47594 1.07316 1.06305 1.73588 1.22305 0.98933 0.84809 1.02220 1.18347 0.86810 0.83544 0.76293 1.90795 1.69533 1.31083 1.48884 1.19859 0.92819 0.96551 0.97810 1.22217 0.96307 1.01129 1.01942 1.22719 0.90202 0.94476 0.94724 1.67651 1.39777 1.04820 1.05457 1.18554 0.87162 0.89929 0.90021 1.44241 1.07700 1.33970 1.45758 1.21971 0.80628 0.87048 0.81808 1.90776 1.71224 1.32389 1.38572 1.21934 0.98926 0.96737 0.99168 1.18930 0.85649 0.97392 0.98166 1.21233 0.91340 1.13104 1.30881 0.92478 1.25033 0.98180 0.95645 0.95569 1.70010 1.10228 1.31471 1.41017 0.86521 0.80457 0.81210 0.79688 1.19741 1.21004 1.21019 1.21475 0.92183 1.01819 1.03472 0.92421 0.90885 0.90384 0.88723 0.91652 0.91588 0.84127 0.81793 0.74684 0.89865 0.89791 0.95638 0.95689 0.92967 0.83918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.53 10.45 59.85 0.63 1.15 16 2 N -0.61 -4.94 3.27 -190.53 -0.62 -5.57 16 3 C 0.06 0.31 9.22 59.85 0.55 0.86 16 4 C 0.56 6.35 7.35 -12.19 -0.09 6.26 16 5 O -0.53 -7.67 16.58 5.36 0.09 -7.58 16 6 C -0.06 -0.66 5.14 -104.68 -0.54 -1.20 16 7 C -0.19 -1.82 7.45 -39.02 -0.29 -2.11 16 8 C 0.14 1.61 11.16 -17.62 -0.20 1.42 16 9 N -0.46 -7.52 7.89 -12.41 -0.10 -7.62 16 10 C 0.38 5.54 7.41 -154.75 -1.15 4.40 16 11 N -0.67 -9.78 5.39 -11.44 -0.06 -9.84 16 12 C 0.50 9.55 7.78 -10.99 -0.09 9.47 16 13 O -0.46 -10.88 14.27 5.56 0.08 -10.80 16 14 C -0.13 -2.51 5.64 -27.88 -0.16 -2.67 16 15 C 0.04 0.96 4.26 -27.88 -0.12 0.84 16 16 C -0.53 -14.80 9.11 -34.44 -0.31 -15.12 16 17 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 18 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 19 N -0.89 -27.28 13.29 55.43 0.74 -26.54 16 20 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 21 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 22 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 24 C -0.16 -2.00 9.60 -38.80 -0.37 -2.38 16 25 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.07 0.26 8.07 -51.93 -0.42 -0.16 16 27 H 0.08 0.58 7.49 -51.93 -0.39 0.19 16 28 H 0.09 0.56 4.50 -51.93 -0.23 0.33 16 29 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.14 0.88 6.62 -52.49 -0.35 0.53 16 32 H 0.16 1.48 8.06 -52.48 -0.42 1.06 16 33 H 0.42 4.37 8.70 -40.82 -0.36 4.01 16 34 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 35 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 36 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 37 H 0.02 0.72 8.10 -51.93 -0.42 0.30 16 38 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 39 H 0.14 1.51 8.06 -52.49 -0.42 1.08 16 LS Contribution 336.02 15.07 5.06 5.06 Total: -1.00 -37.89 336.02 -7.15 -45.05 By element: Atomic # 1 Polarization: 3.89 SS G_CDS: -5.09 Total: -1.20 kcal Atomic # 6 Polarization: 4.72 SS G_CDS: -2.23 Total: 2.49 kcal Atomic # 7 Polarization: -49.53 SS G_CDS: -0.05 Total: -49.57 kcal Atomic # 8 Polarization: -18.56 SS G_CDS: 0.17 Total: -18.39 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -37.89 -7.15 -45.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360360022.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.721 kcal (2) G-P(sol) polarization free energy of solvation -37.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds