Wall clock time and date at job start Tue Mar 31 2020 06:32:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34774 * 120.00490 * 2 1 4 4 N 1.34783 * 119.99576 * 354.56250 * 3 2 1 5 5 O 1.21580 * 119.99983 * 174.55232 * 3 2 1 6 6 C 1.39948 * 119.99701 * 180.02562 * 2 1 3 7 7 C 1.38933 * 120.03361 * 119.51906 * 6 2 1 8 8 C 1.38142 * 120.06948 * 180.02562 * 7 6 2 9 9 C 1.38182 * 120.13982 * 359.70871 * 8 7 6 10 10 C 1.38903 * 120.06722 * 0.54576 * 9 8 7 11 11 N 1.39925 * 120.03773 * 179.74682 * 10 9 8 12 12 C 1.34781 * 120.00029 * 326.20403 * 11 10 9 13 13 O 1.21293 * 119.99592 * 354.91523 * 12 11 10 14 14 C 1.50696 * 120.00173 * 174.91321 * 12 11 10 15 15 C 1.52998 * 109.47376 * 180.02562 * 14 12 11 16 16 C 1.50696 * 109.47376 * 179.97438 * 15 14 12 17 17 H 1.07996 * 119.99673 * 0.02562 * 16 15 14 18 18 C 1.37875 * 119.99869 * 179.97438 * 16 15 14 19 19 N 1.31515 * 120.00154 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99674 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46998 * 90.00359 * 20 18 16 22 22 H 1.48501 * 109.47157 * 210.00085 * 20 18 16 23 23 H 1.48501 * 109.47311 * 330.00281 * 20 18 16 24 24 C 1.38721 * 120.03519 * 299.54496 * 6 2 1 25 25 H 1.09002 * 109.46811 * 269.99740 * 1 2 3 26 26 H 1.08998 * 109.46821 * 29.99334 * 1 2 3 27 27 H 1.09000 * 109.47701 * 149.99740 * 1 2 3 28 28 H 0.96993 * 120.00236 * 359.97438 * 4 3 2 29 29 H 0.97002 * 119.99391 * 179.97438 * 4 3 2 30 30 H 1.07998 * 119.96835 * 0.03087 * 7 6 2 31 31 H 1.08005 * 119.93301 * 180.02562 * 8 7 6 32 32 H 1.08005 * 119.96599 * 180.29976 * 9 8 7 33 33 H 0.96999 * 119.99798 * 146.19841 * 11 10 9 34 34 H 1.09001 * 109.47071 * 60.00104 * 14 12 11 35 35 H 1.09004 * 109.47039 * 299.99963 * 14 12 11 36 36 H 1.08996 * 109.46980 * 300.00315 * 15 14 12 37 37 H 1.09001 * 109.46952 * 60.00011 * 15 14 12 38 38 H 0.97003 * 119.99327 * 179.97438 * 19 18 16 39 39 H 1.08002 * 120.06836 * 359.97438 * 24 6 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 7 1.4696 2.3318 -0.1106 5 8 3.3507 1.1694 0.1000 6 6 2.1647 -1.2120 -0.0005 7 6 3.0256 -1.5175 -1.0473 8 6 3.7162 -2.7139 -1.0489 9 6 3.5579 -3.6077 -0.0071 10 6 2.6947 -3.3106 1.0398 11 7 2.5308 -4.2185 2.0918 12 6 2.5952 -5.5437 1.8545 13 8 2.7027 -5.9515 0.7172 14 6 2.5336 -6.5186 3.0020 15 6 2.6269 -7.9474 2.4629 16 6 2.5660 -8.9222 3.6105 17 1 2.4698 -8.5590 4.6230 18 6 2.6319 -10.2778 3.3676 19 7 2.7485 -10.7201 2.1346 20 14 2.5571 -11.4862 4.7903 21 1 1.1426 -11.8539 5.0535 22 1 3.3296 -12.7064 4.4445 23 1 3.1395 -10.8589 6.0038 24 6 1.9990 -2.1099 1.0438 25 1 -0.3633 0.0000 1.0277 26 1 -0.3633 0.8900 -0.5137 27 1 -0.3634 -0.8899 -0.5139 28 1 0.5030 2.3299 -0.1906 29 1 1.9547 3.1718 -0.1102 30 1 3.1551 -0.8189 -1.8607 31 1 4.3852 -2.9489 -1.8636 32 1 4.1029 -4.5402 -0.0087 33 1 2.3710 -3.8941 2.9919 34 1 1.5918 -6.3921 3.5360 35 1 3.3648 -6.3322 3.6821 36 1 1.7961 -8.1340 1.7826 37 1 3.5689 -8.0735 1.9292 38 1 2.7953 -11.6739 1.9639 39 1 1.3303 -1.8747 1.8587 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360453896.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:21 Heat of formation + Delta-G solvation = -33.781703 kcal Electronic energy + Delta-G solvation = -22123.250882 eV Core-core repulsion = 18645.089694 eV Total energy + Delta-G solvation = -3478.161189 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.92554 -39.95960 -38.17765 -35.82037 -34.52607 -33.69345 -33.50651 -31.18242 -30.19559 -29.29166 -27.08363 -25.77777 -23.54084 -22.67308 -21.74670 -20.41795 -19.55718 -18.78552 -17.57943 -17.22870 -16.79749 -16.25958 -16.09008 -15.63670 -15.16606 -15.04707 -14.47426 -14.30648 -14.19970 -13.76045 -13.51405 -13.32178 -13.00467 -12.78495 -12.26618 -12.21163 -11.85389 -11.55586 -11.20736 -10.95599 -10.62817 -10.57548 -10.21933 -10.06572 -10.01455 -9.74449 -9.58710 -9.22064 -9.07686 -8.55265 -8.35380 -7.94512 -5.99003 -4.03686 1.28875 1.35436 2.36037 2.83064 3.06387 3.31838 3.34999 3.38918 3.41838 3.70573 3.93396 4.45225 4.59632 4.85681 4.91895 5.15332 5.18669 5.24153 5.36181 5.36920 5.47454 5.55268 5.69207 5.97077 6.12708 6.14218 6.32399 6.37902 6.43901 6.49585 6.57093 6.73660 6.81566 7.13296 7.41820 7.66984 7.70882 7.80385 8.02659 8.25662 8.33431 8.57917 9.04294 9.60174 11.11893 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.041527 B = 0.002582 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.104152 B =10841.138373 C =11124.333401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.585 5.585 3 C 0.708 3.292 4 N -0.866 5.866 5 O -0.576 6.576 6 C 0.171 3.829 7 C -0.128 4.128 8 C -0.087 4.087 9 C -0.122 4.122 10 C 0.171 3.829 11 N -0.686 5.686 12 C 0.509 3.491 13 O -0.511 6.511 14 C -0.129 4.129 15 C 0.037 3.963 16 C -0.528 4.528 17 H 0.056 0.944 18 C 0.058 3.942 19 N -0.889 5.889 20 Si 0.894 3.106 21 H -0.281 1.281 22 H -0.286 1.286 23 H -0.274 1.274 24 C -0.158 4.158 25 H 0.061 0.939 26 H 0.071 0.929 27 H 0.081 0.919 28 H 0.397 0.603 29 H 0.415 0.585 30 H 0.119 0.881 31 H 0.129 0.871 32 H 0.139 0.861 33 H 0.409 0.591 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.024 0.976 37 H 0.025 0.975 38 H 0.261 0.739 39 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.025 25.888 -3.886 26.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.318 5.318 3 C 0.408 3.592 4 N -0.436 5.436 5 O -0.451 6.451 6 C 0.079 3.921 7 C -0.149 4.149 8 C -0.106 4.106 9 C -0.143 4.143 10 C 0.076 3.924 11 N -0.332 5.332 12 C 0.299 3.701 13 O -0.384 6.384 14 C -0.169 4.169 15 C -0.001 4.001 16 C -0.567 4.567 17 H 0.075 0.925 18 C -0.144 4.144 19 N -0.528 5.528 20 Si 0.721 3.279 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.199 1.199 24 C -0.181 4.181 25 H 0.080 0.920 26 H 0.089 0.911 27 H 0.100 0.900 28 H 0.227 0.773 29 H 0.247 0.753 30 H 0.137 0.863 31 H 0.147 0.853 32 H 0.157 0.843 33 H 0.244 0.756 34 H 0.101 0.899 35 H 0.103 0.897 36 H 0.043 0.957 37 H 0.043 0.957 38 H 0.071 0.929 39 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -5.141 25.196 -4.697 26.141 hybrid contribution -0.627 -0.091 1.182 1.341 sum -5.768 25.105 -3.515 25.998 Atomic orbital electron populations 1.21857 0.78611 1.03549 1.02385 1.44390 1.06445 1.03369 1.77589 1.15866 0.85207 0.80526 0.77642 1.43117 1.11288 1.07395 1.81766 1.91018 1.11744 1.85891 1.56488 1.16903 0.96041 0.85042 0.94098 1.21021 0.98762 0.97267 0.97859 1.20895 0.98702 0.92817 0.98198 1.21298 0.97912 1.00796 0.94256 1.17566 0.94654 0.89611 0.90608 1.43970 1.73047 1.06082 1.10147 1.21845 0.74171 0.81628 0.92433 1.90693 1.46063 1.77876 1.23790 1.21915 1.02884 0.97145 0.94937 1.18918 0.98705 0.86239 0.96243 1.21194 1.51126 0.91211 0.93127 0.92549 1.25025 0.95237 0.98544 0.95571 1.69997 1.49681 1.14182 1.18895 0.86580 0.78015 0.80756 0.82526 1.20666 1.21199 1.19874 1.20737 1.02760 0.95583 0.98994 0.92042 0.91070 0.90021 0.77329 0.75263 0.86259 0.85292 0.84283 0.75593 0.89894 0.89717 0.95719 0.95687 0.92901 0.85720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.43 10.12 59.85 0.61 1.04 16 2 N -0.58 -5.76 2.96 -126.25 -0.37 -6.13 16 3 C 0.71 7.70 8.35 -86.92 -0.73 6.97 16 4 N -0.87 -4.99 8.76 27.63 0.24 -4.75 16 5 O -0.58 -9.00 16.69 5.30 0.09 -8.91 16 6 C 0.17 2.15 4.97 -83.72 -0.42 1.73 16 7 C -0.13 -1.68 9.15 -39.36 -0.36 -2.04 16 8 C -0.09 -1.17 10.03 -39.64 -0.40 -1.57 16 9 C -0.12 -1.91 8.65 -39.36 -0.34 -2.25 16 10 C 0.17 2.52 6.27 -83.72 -0.52 2.00 16 11 N -0.69 -9.87 5.34 -9.88 -0.05 -9.92 16 12 C 0.51 9.49 7.57 -10.99 -0.08 9.40 16 13 O -0.51 -11.52 13.69 5.55 0.08 -11.44 16 14 C -0.13 -2.51 5.64 -27.89 -0.16 -2.66 16 15 C 0.04 0.96 4.26 -27.89 -0.12 0.84 16 16 C -0.53 -14.74 9.11 -34.44 -0.31 -15.05 16 17 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 18 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 19 N -0.89 -27.14 13.29 55.43 0.74 -26.40 16 20 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 24 C -0.16 -1.99 9.63 -39.21 -0.38 -2.37 16 25 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 26 H 0.07 0.19 6.16 -51.93 -0.32 -0.13 16 27 H 0.08 0.47 8.05 -51.93 -0.42 0.05 16 28 H 0.40 1.06 6.47 -40.82 -0.26 0.79 16 29 H 0.42 1.91 8.93 -40.82 -0.36 1.54 16 30 H 0.12 1.46 8.06 -52.49 -0.42 1.03 16 31 H 0.13 1.46 8.06 -52.48 -0.42 1.04 16 32 H 0.14 2.42 6.44 -52.48 -0.34 2.08 16 33 H 0.41 4.44 8.82 -40.82 -0.36 4.08 16 34 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 35 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 36 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 37 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 38 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 39 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 LS Contribution 336.53 15.07 5.07 5.07 Total: -1.00 -37.44 336.53 -7.52 -44.97 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -4.98 Total: 3.47 kcal Atomic # 6 Polarization: 0.92 SS G_CDS: -3.31 Total: -2.39 kcal Atomic # 7 Polarization: -47.76 SS G_CDS: 0.55 Total: -47.21 kcal Atomic # 8 Polarization: -20.52 SS G_CDS: 0.16 Total: -20.36 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -37.44 -7.52 -44.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360453896.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.186 kcal (2) G-P(sol) polarization free energy of solvation -37.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds