Wall clock time and date at job start Tue Mar 31 2020 06:32:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34774 * 120.00490 * 2 1 4 4 N 1.34783 * 119.99576 * 354.56250 * 3 2 1 5 5 O 1.21580 * 119.99983 * 174.55232 * 3 2 1 6 6 C 1.39948 * 119.99701 * 180.02562 * 2 1 3 7 7 C 1.38933 * 120.03361 * 119.51906 * 6 2 1 8 8 C 1.38142 * 120.06948 * 180.02562 * 7 6 2 9 9 C 1.38182 * 120.13982 * 359.70871 * 8 7 6 10 10 C 1.38903 * 120.06722 * 0.54576 * 9 8 7 11 11 N 1.39925 * 120.03773 * 179.74682 * 10 9 8 12 12 C 1.34781 * 120.00029 * 326.20403 * 11 10 9 13 13 O 1.21293 * 119.99592 * 354.91523 * 12 11 10 14 14 C 1.50696 * 120.00173 * 174.91321 * 12 11 10 15 15 C 1.52998 * 109.47376 * 180.02562 * 14 12 11 16 16 C 1.50696 * 109.47376 * 179.97438 * 15 14 12 17 17 H 1.07996 * 119.99673 * 0.02562 * 16 15 14 18 18 C 1.37875 * 119.99869 * 179.97438 * 16 15 14 19 19 N 1.31515 * 120.00154 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99674 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46998 * 90.00359 * 20 18 16 22 22 H 1.48501 * 109.47157 * 210.00085 * 20 18 16 23 23 H 1.48501 * 109.47311 * 330.00281 * 20 18 16 24 24 C 1.38721 * 120.03519 * 299.54496 * 6 2 1 25 25 H 1.09002 * 109.46811 * 269.99740 * 1 2 3 26 26 H 1.08998 * 109.46821 * 29.99334 * 1 2 3 27 27 H 1.09000 * 109.47701 * 149.99740 * 1 2 3 28 28 H 0.96993 * 120.00236 * 359.97438 * 4 3 2 29 29 H 0.97002 * 119.99391 * 179.97438 * 4 3 2 30 30 H 1.07998 * 119.96835 * 0.03087 * 7 6 2 31 31 H 1.08005 * 119.93301 * 180.02562 * 8 7 6 32 32 H 1.08005 * 119.96599 * 180.29976 * 9 8 7 33 33 H 0.96999 * 119.99798 * 146.19841 * 11 10 9 34 34 H 1.09001 * 109.47071 * 60.00104 * 14 12 11 35 35 H 1.09004 * 109.47039 * 299.99963 * 14 12 11 36 36 H 1.08996 * 109.46980 * 300.00315 * 15 14 12 37 37 H 1.09001 * 109.46952 * 60.00011 * 15 14 12 38 38 H 0.97003 * 119.99327 * 179.97438 * 19 18 16 39 39 H 1.08002 * 120.06836 * 359.97438 * 24 6 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 7 1.4696 2.3318 -0.1106 5 8 3.3507 1.1694 0.1000 6 6 2.1647 -1.2120 -0.0005 7 6 3.0256 -1.5175 -1.0473 8 6 3.7162 -2.7139 -1.0489 9 6 3.5579 -3.6077 -0.0071 10 6 2.6947 -3.3106 1.0398 11 7 2.5308 -4.2185 2.0918 12 6 2.5952 -5.5437 1.8545 13 8 2.7027 -5.9515 0.7172 14 6 2.5336 -6.5186 3.0020 15 6 2.6269 -7.9474 2.4629 16 6 2.5660 -8.9222 3.6105 17 1 2.4698 -8.5590 4.6230 18 6 2.6319 -10.2778 3.3676 19 7 2.7485 -10.7201 2.1346 20 14 2.5571 -11.4862 4.7903 21 1 1.1426 -11.8539 5.0535 22 1 3.3296 -12.7064 4.4445 23 1 3.1395 -10.8589 6.0038 24 6 1.9990 -2.1099 1.0438 25 1 -0.3633 0.0000 1.0277 26 1 -0.3633 0.8900 -0.5137 27 1 -0.3634 -0.8899 -0.5139 28 1 0.5030 2.3299 -0.1906 29 1 1.9547 3.1718 -0.1102 30 1 3.1551 -0.8189 -1.8607 31 1 4.3852 -2.9489 -1.8636 32 1 4.1029 -4.5402 -0.0087 33 1 2.3710 -3.8941 2.9919 34 1 1.5918 -6.3921 3.5360 35 1 3.3648 -6.3322 3.6821 36 1 1.7961 -8.1340 1.7826 37 1 3.5689 -8.0735 1.9292 38 1 2.7953 -11.6739 1.9639 39 1 1.3303 -1.8747 1.8587 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360453896.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:21 Heat of formation + Delta-G solvation = -62.132796 kcal Electronic energy + Delta-G solvation = -22124.480278 eV Core-core repulsion = 18645.089694 eV Total energy + Delta-G solvation = -3479.390584 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.87778 -41.16850 -39.34633 -36.77892 -35.70624 -35.54017 -34.47320 -33.06685 -31.23671 -30.42806 -27.87168 -27.52672 -24.76519 -23.97630 -23.08271 -21.71107 -20.74814 -19.59968 -18.88297 -18.39658 -17.94028 -17.49085 -17.25341 -16.97980 -16.47195 -16.37466 -16.05210 -15.38691 -15.16545 -14.96179 -14.67189 -14.33152 -14.18703 -14.07240 -13.68908 -13.32884 -13.27381 -12.96250 -12.80662 -12.58773 -12.47247 -11.91689 -11.64490 -11.52280 -11.41640 -11.29903 -10.85472 -10.73782 -10.55774 -10.36217 -9.50367 -9.08088 -8.17564 -6.31251 0.20004 0.27892 1.43151 1.45579 1.56274 1.57229 1.67001 2.00907 2.14621 2.44489 2.74157 3.15892 3.29047 3.82042 3.98819 4.12563 4.14110 4.22006 4.39782 4.44807 4.53406 4.55481 4.62554 4.63105 4.83995 5.05023 5.16915 5.24656 5.36839 5.43240 5.50446 5.54716 5.63411 5.76065 5.85997 5.95048 6.08854 6.17736 6.46085 6.81317 6.87139 7.19998 7.39023 7.54563 8.95020 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.041527 B = 0.002582 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.104152 B =10841.138373 C =11124.333401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.584 5.584 3 C 0.702 3.298 4 N -0.840 5.840 5 O -0.630 6.630 6 C 0.170 3.830 7 C -0.133 4.133 8 C -0.089 4.089 9 C -0.147 4.147 10 C 0.153 3.847 11 N -0.663 5.663 12 C 0.513 3.487 13 O -0.561 6.561 14 C -0.116 4.116 15 C 0.041 3.959 16 C -0.542 4.542 17 H 0.077 0.923 18 C -0.007 4.007 19 N -0.937 5.937 20 Si 0.973 3.027 21 H -0.271 1.271 22 H -0.288 1.288 23 H -0.256 1.256 24 C -0.147 4.147 25 H 0.078 0.922 26 H 0.103 0.897 27 H 0.079 0.921 28 H 0.415 0.585 29 H 0.423 0.577 30 H 0.127 0.873 31 H 0.143 0.857 32 H 0.112 0.888 33 H 0.428 0.572 34 H 0.112 0.888 35 H 0.109 0.891 36 H -0.015 1.015 37 H -0.016 1.016 38 H 0.262 0.738 39 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.768 28.132 -1.831 29.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.317 5.317 3 C 0.402 3.598 4 N -0.411 5.411 5 O -0.510 6.510 6 C 0.078 3.922 7 C -0.153 4.153 8 C -0.109 4.109 9 C -0.168 4.168 10 C 0.058 3.942 11 N -0.310 5.310 12 C 0.303 3.697 13 O -0.438 6.438 14 C -0.156 4.156 15 C 0.003 3.997 16 C -0.580 4.580 17 H 0.095 0.905 18 C -0.205 4.205 19 N -0.578 5.578 20 Si 0.797 3.203 21 H -0.197 1.197 22 H -0.214 1.214 23 H -0.179 1.179 24 C -0.170 4.170 25 H 0.096 0.904 26 H 0.122 0.878 27 H 0.098 0.902 28 H 0.248 0.752 29 H 0.257 0.743 30 H 0.145 0.855 31 H 0.161 0.839 32 H 0.130 0.870 33 H 0.268 0.732 34 H 0.130 0.870 35 H 0.127 0.873 36 H 0.003 0.997 37 H 0.002 0.998 38 H 0.071 0.929 39 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -6.959 27.536 -2.603 28.521 hybrid contribution -0.129 -0.647 0.458 0.803 sum -7.087 26.889 -2.145 27.890 Atomic orbital electron populations 1.22180 0.75758 1.05176 1.04005 1.44463 1.07978 1.02102 1.77124 1.16099 0.84693 0.81599 0.77438 1.42881 1.12217 1.06139 1.79865 1.90986 1.14265 1.86774 1.59012 1.17080 0.95576 0.86021 0.93564 1.21204 0.98669 0.96975 0.98477 1.21049 0.98985 0.92757 0.98067 1.21231 0.99196 1.00458 0.95928 1.17689 0.95527 0.90446 0.90564 1.43544 1.71628 1.04520 1.11300 1.21609 0.73791 0.82951 0.91303 1.90688 1.48638 1.78974 1.25459 1.21670 1.05424 0.93180 0.95327 1.18704 0.94910 0.90827 0.95215 1.21708 1.50230 0.91791 0.94253 0.90470 1.26126 0.94719 1.01110 0.98524 1.70176 1.51156 1.14657 1.21761 0.85334 0.78366 0.77621 0.78998 1.19674 1.21354 1.17934 1.20892 1.02254 0.94277 0.99535 0.90387 0.87834 0.90200 0.75185 0.74332 0.85497 0.83883 0.87041 0.73243 0.86988 0.87287 0.99672 0.99799 0.92890 0.82961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.52 10.12 127.77 1.29 1.81 16 2 N -0.58 -10.03 2.96 -671.62 -1.99 -12.01 16 3 C 0.70 13.76 8.35 179.05 1.50 15.25 16 4 N -0.84 -7.13 8.76 -184.75 -1.62 -8.75 16 5 O -0.63 -19.15 16.69 -3.97 -0.07 -19.22 16 6 C 0.17 4.02 4.97 38.13 0.19 4.21 16 7 C -0.13 -3.41 9.15 22.41 0.21 -3.20 16 8 C -0.09 -2.48 10.03 22.23 0.22 -2.26 16 9 C -0.15 -4.80 8.65 22.42 0.19 -4.61 16 10 C 0.15 4.45 6.27 38.13 0.24 4.68 16 11 N -0.66 -18.46 5.34 -303.55 -1.62 -20.08 16 12 C 0.51 19.39 7.57 87.65 0.66 20.06 16 13 O -0.56 -26.72 13.69 -3.07 -0.04 -26.76 16 14 C -0.12 -4.47 5.64 29.85 0.17 -4.30 16 15 C 0.04 2.24 4.26 29.85 0.13 2.37 16 16 C -0.54 -30.34 9.11 25.60 0.23 -30.10 16 17 H 0.08 3.91 7.74 -2.91 -0.02 3.89 16 18 C -0.01 -0.42 5.46 84.65 0.46 0.04 16 19 N -0.94 -59.16 13.29 21.45 0.28 -58.88 16 20 Si 0.97 43.96 29.54 68.60 2.03 45.98 16 21 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 22 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 23 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 24 C -0.15 -3.44 9.63 22.51 0.22 -3.23 16 25 H 0.08 0.37 8.14 -2.39 -0.02 0.36 16 26 H 0.10 0.08 6.16 -2.39 -0.01 0.06 16 27 H 0.08 0.68 8.05 -2.39 -0.02 0.66 16 28 H 0.41 0.53 6.47 -92.71 -0.60 -0.07 16 29 H 0.42 2.75 8.93 -92.71 -0.83 1.92 16 30 H 0.13 3.02 8.06 -2.91 -0.02 3.00 16 31 H 0.14 3.36 8.06 -2.91 -0.02 3.34 16 32 H 0.11 4.23 6.44 -2.91 -0.02 4.21 16 33 H 0.43 8.26 8.82 -92.71 -0.82 7.44 16 34 H 0.11 3.66 8.14 -2.39 -0.02 3.64 16 35 H 0.11 3.66 8.14 -2.39 -0.02 3.64 16 36 H -0.02 -0.93 8.10 -2.39 -0.02 -0.95 16 37 H -0.02 -1.02 8.10 -2.39 -0.02 -1.04 16 38 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 39 H 0.15 2.64 8.06 -2.91 -0.02 2.62 16 Total: -1.00 -86.40 336.53 1.55 -84.85 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: -1.14 Total: 14.15 kcal Atomic # 6 Polarization: -4.99 SS G_CDS: 5.71 Total: 0.72 kcal Atomic # 7 Polarization: -94.78 SS G_CDS: -4.94 Total: -99.72 kcal Atomic # 8 Polarization: -45.87 SS G_CDS: -0.11 Total: -45.98 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.98 kcal Total: -86.40 1.55 -84.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360453896.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.716 kcal (2) G-P(sol) polarization free energy of solvation -86.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds