Wall clock time and date at job start Tue Mar 31 2020 06:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21285 * 120.00091 * 2 1 4 4 N 1.34776 * 120.00325 * 179.97438 * 2 1 3 5 5 C 1.39919 * 120.00393 * 184.62345 * 4 2 1 6 6 C 1.38887 * 120.07117 * 324.89822 * 5 4 2 7 7 C 1.38097 * 119.92963 * 180.02562 * 6 5 4 8 8 C 1.38306 * 120.06649 * 359.72544 * 7 6 5 9 9 C 1.38259 * 120.14615 * 0.55127 * 8 7 6 10 10 C 1.50691 * 119.96942 * 179.72298 * 9 8 7 11 11 N 1.46497 * 109.47226 * 269.73047 * 10 9 8 12 12 C 1.34778 * 120.00121 * 179.72229 * 11 10 9 13 13 O 1.21584 * 120.00237 * 0.27687 * 12 11 10 14 14 N 1.34779 * 120.00119 * 180.27117 * 12 11 10 15 15 C 1.46497 * 120.00313 * 180.02562 * 14 12 11 16 16 C 1.50699 * 109.47393 * 180.02562 * 15 14 12 17 17 H 1.07998 * 120.00073 * 0.02562 * 16 15 14 18 18 C 1.37881 * 119.99959 * 179.97438 * 16 15 14 19 19 N 1.31511 * 119.99946 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99748 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47161 * 89.99971 * 20 18 16 22 22 H 1.48500 * 109.46798 * 210.00040 * 20 18 16 23 23 H 1.48501 * 109.47028 * 329.99418 * 20 18 16 24 24 C 1.38138 * 120.06288 * 359.44875 * 9 8 7 25 25 H 1.09003 * 109.47189 * 240.00861 * 1 2 3 26 26 H 1.09001 * 109.47328 * 359.97438 * 1 2 3 27 27 H 1.08996 * 109.47451 * 120.00625 * 1 2 3 28 28 H 0.97005 * 119.99566 * 4.63037 * 4 2 1 29 29 H 1.08001 * 120.03975 * 0.02562 * 6 5 4 30 30 H 1.08001 * 119.96811 * 180.02562 * 7 6 5 31 31 H 1.08008 * 119.92709 * 180.27590 * 8 7 6 32 32 H 1.08995 * 109.47315 * 149.72703 * 10 9 8 33 33 H 1.09009 * 109.46913 * 29.72569 * 10 9 8 34 34 H 0.97001 * 119.99942 * 359.97438 * 11 10 9 35 35 H 0.97001 * 120.00001 * 0.02562 * 14 12 11 36 36 H 1.09001 * 109.46908 * 300.00171 * 15 14 12 37 37 H 1.09002 * 109.47086 * 59.99672 * 15 14 12 38 38 H 0.97000 * 120.00373 * 180.02562 * 19 18 16 39 39 H 1.08006 * 120.02914 * 180.24813 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.5767 -1.1691 0.0982 6 6 4.3178 -0.1600 -0.5029 7 6 5.6953 -0.1650 -0.4051 8 6 6.3365 -1.1705 0.2953 9 6 5.6020 -2.1797 0.8901 10 6 6.3052 -3.2767 1.6470 11 7 6.6126 -4.3804 0.7341 12 6 7.2501 -5.4760 1.1920 13 8 7.5656 -5.5506 2.3638 14 7 7.5378 -6.4891 0.3509 15 6 8.2302 -7.6803 0.8487 16 6 8.4307 -8.6547 -0.2833 17 1 8.0780 -8.4108 -1.2746 18 6 9.0654 -9.8570 -0.0538 19 7 9.4962 -10.1533 1.1529 20 14 9.3145 -11.0645 -1.4571 21 1 10.6135 -10.7895 -2.1220 22 1 9.3150 -12.4503 -0.9235 23 1 8.2128 -10.9135 -2.4414 24 6 4.2239 -2.1802 0.7959 25 1 -0.3634 -0.5137 0.8901 26 1 -0.3634 1.0277 0.0005 27 1 -0.3634 -0.5139 -0.8899 28 1 1.6982 -2.0059 -0.0669 29 1 3.8174 0.6279 -1.0463 30 1 6.2721 0.6196 -0.8720 31 1 7.4137 -1.1698 0.3741 32 1 5.6597 -3.6368 2.4481 33 1 7.2307 -2.8888 2.0727 34 1 6.3606 -4.3211 -0.2007 35 1 7.2864 -6.4295 -0.5841 36 1 9.1995 -7.3933 1.2565 37 1 7.6316 -8.1486 1.6300 38 1 9.9430 -10.9990 1.3144 39 1 3.6504 -2.9667 1.2641 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426416335.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:38 Heat of formation + Delta-G solvation = -45.873172 kcal Electronic energy + Delta-G solvation = -21599.091306 eV Core-core repulsion = 18120.405792 eV Total energy + Delta-G solvation = -3478.685514 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.86159 -39.39639 -38.61886 -35.48945 -34.47211 -33.92778 -32.33821 -31.25537 -31.14920 -28.94753 -27.38847 -25.65739 -22.87875 -22.71063 -22.14915 -20.40006 -20.14653 -18.28273 -17.82811 -17.12322 -16.46528 -16.08123 -15.91940 -15.61625 -15.22485 -14.63339 -14.56324 -14.48491 -13.92291 -13.68902 -13.37806 -13.13616 -13.02439 -12.86908 -12.68013 -12.47738 -11.96201 -11.87873 -11.67613 -11.40981 -10.94645 -10.87146 -10.67227 -10.29111 -10.19064 -9.50563 -9.35534 -9.00707 -8.77125 -8.66126 -8.42413 -7.73616 -6.13987 -4.20427 1.00770 1.09963 2.15900 2.66474 3.25517 3.29212 3.32578 3.36109 3.77085 3.97403 4.25453 4.34571 4.54850 4.66799 4.74716 4.84086 4.97126 5.12273 5.16474 5.18330 5.22027 5.26697 5.37625 5.64022 5.68785 5.88040 6.03241 6.09849 6.28737 6.43869 6.76985 6.85724 6.96209 7.14455 7.53723 7.57378 7.59267 7.67373 7.92948 8.06441 8.78400 8.96568 9.35251 9.49976 10.96264 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.026579 B = 0.002432 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.193820 B =11511.611442 C =11875.906738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.510 3.490 3 O -0.528 6.528 4 N -0.674 5.674 5 C 0.135 3.865 6 C -0.116 4.116 7 C -0.105 4.105 8 C -0.112 4.112 9 C -0.083 4.083 10 C 0.183 3.817 11 N -0.754 5.754 12 C 0.693 3.307 13 O -0.601 6.601 14 N -0.729 5.729 15 C 0.267 3.733 16 C -0.541 4.541 17 H 0.062 0.938 18 C 0.063 3.937 19 N -0.885 5.885 20 Si 0.904 3.096 21 H -0.279 1.279 22 H -0.285 1.285 23 H -0.273 1.273 24 C -0.124 4.124 25 H 0.092 0.908 26 H 0.096 0.904 27 H 0.091 0.909 28 H 0.412 0.588 29 H 0.137 0.863 30 H 0.127 0.873 31 H 0.127 0.873 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.392 0.608 35 H 0.386 0.614 36 H 0.025 0.975 37 H 0.025 0.975 38 H 0.265 0.735 39 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.042 19.838 -5.091 26.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.298 3.702 3 O -0.403 6.403 4 N -0.320 5.320 5 C 0.041 3.959 6 C -0.136 4.136 7 C -0.124 4.124 8 C -0.131 4.131 9 C -0.084 4.084 10 C 0.058 3.942 11 N -0.411 5.411 12 C 0.392 3.608 13 O -0.480 6.480 14 N -0.382 5.382 15 C 0.146 3.854 16 C -0.580 4.580 17 H 0.080 0.920 18 C -0.141 4.141 19 N -0.523 5.523 20 Si 0.731 3.269 21 H -0.205 1.205 22 H -0.210 1.210 23 H -0.198 1.198 24 C -0.145 4.145 25 H 0.111 0.889 26 H 0.115 0.885 27 H 0.110 0.890 28 H 0.248 0.752 29 H 0.155 0.845 30 H 0.145 0.855 31 H 0.145 0.855 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.225 0.775 35 H 0.218 0.782 36 H 0.043 0.957 37 H 0.043 0.957 38 H 0.075 0.925 39 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -16.269 20.337 -3.842 26.325 hybrid contribution -0.338 -1.111 -1.572 1.954 sum -16.606 19.226 -5.414 25.975 Atomic orbital electron populations 1.21931 0.90628 1.06036 1.04692 1.21027 0.90938 0.83116 0.75090 1.90735 1.70513 1.31323 1.47738 1.43580 1.05286 1.10023 1.73102 1.17709 0.82433 0.97368 0.98344 1.21287 0.93833 0.99004 0.99500 1.21078 0.93950 0.98478 0.98864 1.21170 1.00304 0.94076 0.97551 1.19754 0.92893 0.96578 0.99156 1.19891 0.99229 0.83996 0.91055 1.45181 1.65265 1.18173 1.12522 1.16153 0.78994 0.80019 0.85596 1.90875 1.59849 1.81269 1.16050 1.45716 1.62253 1.18992 1.11191 1.18977 0.91871 0.79516 0.95070 1.21230 1.39428 1.02070 0.95247 0.91969 1.24950 0.95158 0.97974 0.96001 1.69978 1.38193 1.23806 1.20305 0.86412 0.78586 0.80128 0.81738 1.20488 1.21029 1.19808 1.20853 0.94390 0.99456 0.99777 0.88946 0.88546 0.89000 0.75166 0.84526 0.85523 0.85486 0.91115 0.90906 0.77487 0.78175 0.95744 0.95750 0.92477 0.85388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.62 10.32 36.00 0.37 -0.25 16 2 C 0.51 4.09 7.78 -10.99 -0.09 4.00 16 3 O -0.53 -6.48 14.52 5.55 0.08 -6.40 16 4 N -0.67 -4.83 5.34 -9.87 -0.05 -4.88 16 5 C 0.13 1.33 6.30 -83.70 -0.53 0.80 16 6 C -0.12 -1.24 8.70 -39.39 -0.34 -1.58 16 7 C -0.11 -1.03 10.04 -39.61 -0.40 -1.43 16 8 C -0.11 -1.14 9.69 -39.55 -0.38 -1.53 16 9 C -0.08 -0.89 5.25 -104.66 -0.55 -1.44 16 10 C 0.18 2.40 5.80 -5.20 -0.03 2.37 16 11 N -0.75 -11.26 5.55 -66.42 -0.37 -11.63 16 12 C 0.69 14.35 8.57 -86.91 -0.74 13.61 16 13 O -0.60 -15.13 16.34 5.29 0.09 -15.04 16 14 N -0.73 -15.70 5.55 -66.42 -0.37 -16.07 16 15 C 0.27 7.19 5.43 -5.20 -0.03 7.16 16 16 C -0.54 -14.78 9.28 -34.44 -0.32 -15.10 16 17 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 18 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 19 N -0.89 -26.22 13.29 55.43 0.74 -25.49 16 20 Si 0.90 20.89 29.54 -169.99 -5.02 15.87 16 21 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 23 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 24 C -0.12 -1.22 9.62 -39.39 -0.38 -1.60 16 25 H 0.09 0.19 8.14 -51.93 -0.42 -0.24 16 26 H 0.10 0.38 8.12 -51.93 -0.42 -0.05 16 27 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 28 H 0.41 1.64 8.82 -40.82 -0.36 1.28 16 29 H 0.14 1.54 6.23 -52.49 -0.33 1.22 16 30 H 0.13 1.00 8.06 -52.49 -0.42 0.57 16 31 H 0.13 1.18 8.06 -52.48 -0.42 0.76 16 32 H 0.07 0.97 8.08 -51.93 -0.42 0.55 16 33 H 0.07 1.01 8.08 -51.92 -0.42 0.59 16 34 H 0.39 4.85 8.48 -40.82 -0.35 4.50 16 35 H 0.39 7.09 8.34 -40.82 -0.34 6.75 16 36 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.02 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 39 H 0.13 1.09 8.06 -52.48 -0.42 0.67 16 LS Contribution 342.48 15.07 5.16 5.16 Total: -1.00 -36.10 342.48 -8.39 -44.49 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -5.13 Total: 7.33 kcal Atomic # 6 Polarization: 10.18 SS G_CDS: -3.51 Total: 6.67 kcal Atomic # 7 Polarization: -58.01 SS G_CDS: -0.05 Total: -58.07 kcal Atomic # 8 Polarization: -21.61 SS G_CDS: 0.17 Total: -21.44 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -36.10 -8.39 -44.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426416335.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.385 kcal (2) G-P(sol) polarization free energy of solvation -36.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds