Wall clock time and date at job start Tue Mar 31 2020 06:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21285 * 120.00091 * 2 1 4 4 N 1.34776 * 120.00325 * 179.97438 * 2 1 3 5 5 C 1.39919 * 120.00393 * 184.62345 * 4 2 1 6 6 C 1.38887 * 120.07117 * 324.89822 * 5 4 2 7 7 C 1.38097 * 119.92963 * 180.02562 * 6 5 4 8 8 C 1.38306 * 120.06649 * 359.72544 * 7 6 5 9 9 C 1.38259 * 120.14615 * 0.55127 * 8 7 6 10 10 C 1.50691 * 119.96942 * 179.72298 * 9 8 7 11 11 N 1.46497 * 109.47226 * 269.73047 * 10 9 8 12 12 C 1.34778 * 120.00121 * 179.72229 * 11 10 9 13 13 O 1.21584 * 120.00237 * 0.27687 * 12 11 10 14 14 N 1.34779 * 120.00119 * 180.27117 * 12 11 10 15 15 C 1.46497 * 120.00313 * 180.02562 * 14 12 11 16 16 C 1.50699 * 109.47393 * 180.02562 * 15 14 12 17 17 H 1.07998 * 120.00073 * 0.02562 * 16 15 14 18 18 C 1.37881 * 119.99959 * 179.97438 * 16 15 14 19 19 N 1.31511 * 119.99946 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99748 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47161 * 89.99971 * 20 18 16 22 22 H 1.48500 * 109.46798 * 210.00040 * 20 18 16 23 23 H 1.48501 * 109.47028 * 329.99418 * 20 18 16 24 24 C 1.38138 * 120.06288 * 359.44875 * 9 8 7 25 25 H 1.09003 * 109.47189 * 240.00861 * 1 2 3 26 26 H 1.09001 * 109.47328 * 359.97438 * 1 2 3 27 27 H 1.08996 * 109.47451 * 120.00625 * 1 2 3 28 28 H 0.97005 * 119.99566 * 4.63037 * 4 2 1 29 29 H 1.08001 * 120.03975 * 0.02562 * 6 5 4 30 30 H 1.08001 * 119.96811 * 180.02562 * 7 6 5 31 31 H 1.08008 * 119.92709 * 180.27590 * 8 7 6 32 32 H 1.08995 * 109.47315 * 149.72703 * 10 9 8 33 33 H 1.09009 * 109.46913 * 29.72569 * 10 9 8 34 34 H 0.97001 * 119.99942 * 359.97438 * 11 10 9 35 35 H 0.97001 * 120.00001 * 0.02562 * 14 12 11 36 36 H 1.09001 * 109.46908 * 300.00171 * 15 14 12 37 37 H 1.09002 * 109.47086 * 59.99672 * 15 14 12 38 38 H 0.97000 * 120.00373 * 180.02562 * 19 18 16 39 39 H 1.08006 * 120.02914 * 180.24813 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.5767 -1.1691 0.0982 6 6 4.3178 -0.1600 -0.5029 7 6 5.6953 -0.1650 -0.4051 8 6 6.3365 -1.1705 0.2953 9 6 5.6020 -2.1797 0.8901 10 6 6.3052 -3.2767 1.6470 11 7 6.6126 -4.3804 0.7341 12 6 7.2501 -5.4760 1.1920 13 8 7.5656 -5.5506 2.3638 14 7 7.5378 -6.4891 0.3509 15 6 8.2302 -7.6803 0.8487 16 6 8.4307 -8.6547 -0.2833 17 1 8.0780 -8.4108 -1.2746 18 6 9.0654 -9.8570 -0.0538 19 7 9.4962 -10.1533 1.1529 20 14 9.3145 -11.0645 -1.4571 21 1 10.6135 -10.7895 -2.1220 22 1 9.3150 -12.4503 -0.9235 23 1 8.2128 -10.9135 -2.4414 24 6 4.2239 -2.1802 0.7959 25 1 -0.3634 -0.5137 0.8901 26 1 -0.3634 1.0277 0.0005 27 1 -0.3634 -0.5139 -0.8899 28 1 1.6982 -2.0059 -0.0669 29 1 3.8174 0.6279 -1.0463 30 1 6.2721 0.6196 -0.8720 31 1 7.4137 -1.1698 0.3741 32 1 5.6597 -3.6368 2.4481 33 1 7.2307 -2.8888 2.0727 34 1 6.3606 -4.3211 -0.2007 35 1 7.2864 -6.4295 -0.5841 36 1 9.1995 -7.3933 1.2565 37 1 7.6316 -8.1486 1.6300 38 1 9.9430 -10.9990 1.3144 39 1 3.6504 -2.9667 1.2641 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426416335.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:38 Heat of formation + Delta-G solvation = -73.574917 kcal Electronic energy + Delta-G solvation = -21600.292544 eV Core-core repulsion = 18120.405792 eV Total energy + Delta-G solvation = -3479.886752 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.58594 -40.86132 -39.60538 -36.55464 -36.01248 -35.36473 -34.32015 -32.29286 -31.78013 -29.63729 -29.16256 -26.94540 -24.54356 -23.56946 -23.14525 -21.85837 -21.15401 -19.84728 -18.69503 -18.09731 -17.70830 -17.29730 -17.18028 -16.77519 -16.45308 -16.34524 -15.66567 -15.44024 -15.06482 -14.93395 -14.60235 -14.30439 -14.05679 -13.94077 -13.67901 -13.48165 -13.35917 -13.01848 -12.88564 -12.69621 -12.66031 -12.25323 -12.20495 -11.45596 -11.42462 -11.26306 -10.90381 -10.78599 -10.27034 -9.87984 -9.56755 -9.17587 -8.26394 -6.42597 0.19176 0.30136 1.44923 1.47652 1.54032 1.58670 1.98361 2.10206 2.26871 2.41365 2.82192 3.08539 3.60702 3.64092 3.78676 3.92799 4.16836 4.33343 4.35652 4.44462 4.57976 4.65562 4.69276 4.73476 4.96970 5.10078 5.11247 5.28889 5.30074 5.35127 5.49414 5.50427 5.52207 5.60002 5.70122 5.87522 6.00427 6.28111 6.42129 6.69293 7.10982 7.26542 7.33151 7.74340 8.85902 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.026579 B = 0.002432 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.193820 B =11511.611442 C =11875.906738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.504 3.496 3 O -0.577 6.577 4 N -0.664 5.664 5 C 0.130 3.870 6 C -0.128 4.128 7 C -0.105 4.105 8 C -0.115 4.115 9 C -0.086 4.086 10 C 0.185 3.815 11 N -0.727 5.727 12 C 0.692 3.308 13 O -0.649 6.649 14 N -0.723 5.723 15 C 0.285 3.715 16 C -0.554 4.554 17 H 0.084 0.916 18 C 0.003 3.997 19 N -0.931 5.931 20 Si 0.986 3.014 21 H -0.271 1.271 22 H -0.284 1.284 23 H -0.255 1.255 24 C -0.122 4.122 25 H 0.113 0.887 26 H 0.092 0.908 27 H 0.117 0.883 28 H 0.429 0.571 29 H 0.128 0.872 30 H 0.144 0.856 31 H 0.135 0.865 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.409 0.591 35 H 0.405 0.595 36 H -0.015 1.015 37 H -0.014 1.014 38 H 0.269 0.731 39 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.638 19.863 -7.272 28.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.295 3.705 3 O -0.456 6.456 4 N -0.311 5.311 5 C 0.036 3.964 6 C -0.148 4.148 7 C -0.124 4.124 8 C -0.134 4.134 9 C -0.088 4.088 10 C 0.061 3.939 11 N -0.384 5.384 12 C 0.392 3.608 13 O -0.531 6.531 14 N -0.377 5.377 15 C 0.162 3.838 16 C -0.592 4.592 17 H 0.102 0.898 18 C -0.197 4.197 19 N -0.569 5.569 20 Si 0.809 3.191 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.179 1.179 24 C -0.142 4.142 25 H 0.132 0.868 26 H 0.111 0.889 27 H 0.135 0.865 28 H 0.268 0.732 29 H 0.146 0.854 30 H 0.162 0.838 31 H 0.153 0.847 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.245 0.755 35 H 0.240 0.760 36 H 0.003 0.997 37 H 0.004 0.996 38 H 0.077 0.923 39 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -17.935 20.396 -6.085 27.833 hybrid contribution 0.105 -1.009 -0.853 1.326 sum -17.829 19.387 -6.938 27.237 Atomic orbital electron populations 1.21955 0.86918 1.06560 1.06855 1.21886 0.92652 0.82367 0.73631 1.90716 1.71778 1.33017 1.50062 1.43588 1.04340 1.10877 1.72320 1.17815 0.83772 0.96925 0.97882 1.21383 0.94376 0.99148 0.99890 1.21268 0.93844 0.98724 0.98553 1.21277 1.00780 0.93973 0.97413 1.19523 0.93267 0.96143 0.99818 1.19938 0.99169 0.83799 0.90966 1.44939 1.63152 1.16657 1.13681 1.16291 0.78964 0.80841 0.84713 1.90845 1.61741 1.82343 1.18217 1.45300 1.62167 1.18002 1.12213 1.18410 0.89695 0.81219 0.94501 1.21601 1.39438 1.02221 0.95910 0.89836 1.26067 0.94487 1.00216 0.98903 1.70141 1.39098 1.24623 1.23057 0.85142 0.79117 0.76816 0.78030 1.19687 1.20980 1.17905 1.20941 0.94062 0.99760 0.99484 0.86826 0.88908 0.86501 0.73209 0.85441 0.83797 0.84707 0.91464 0.91578 0.75467 0.76015 0.99683 0.99555 0.92263 0.84002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.76 10.32 71.23 0.74 -0.03 16 2 C 0.50 7.38 7.78 87.66 0.68 8.07 16 3 O -0.58 -14.06 14.52 -3.05 -0.04 -14.11 16 4 N -0.66 -8.29 5.34 -303.52 -1.62 -9.91 16 5 C 0.13 2.38 6.30 38.15 0.24 2.62 16 6 C -0.13 -2.61 8.70 22.39 0.19 -2.42 16 7 C -0.11 -1.94 10.04 22.25 0.22 -1.72 16 8 C -0.12 -2.20 9.69 22.29 0.22 -1.98 16 9 C -0.09 -1.75 5.25 -19.89 -0.10 -1.85 16 10 C 0.18 4.71 5.80 85.63 0.50 5.21 16 11 N -0.73 -20.93 5.55 -482.31 -2.68 -23.61 16 12 C 0.69 28.80 8.57 179.05 1.53 30.33 16 13 O -0.65 -33.57 16.34 -3.98 -0.07 -33.64 16 14 N -0.72 -31.17 5.55 -482.30 -2.68 -33.85 16 15 C 0.29 15.85 5.43 85.63 0.46 16.31 16 16 C -0.55 -30.16 9.28 25.60 0.24 -29.92 16 17 H 0.08 4.09 7.60 -2.91 -0.02 4.07 16 18 C 0.00 0.16 5.46 84.66 0.46 0.62 16 19 N -0.93 -56.24 13.29 21.45 0.28 -55.95 16 20 Si 0.99 42.18 29.54 68.60 2.03 44.20 16 21 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 22 H -0.28 -12.05 7.11 99.48 0.71 -11.35 16 23 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 24 C -0.12 -2.18 9.62 22.39 0.22 -1.97 16 25 H 0.11 0.09 8.14 -2.39 -0.02 0.07 16 26 H 0.09 0.56 8.12 -2.39 -0.02 0.54 16 27 H 0.12 -0.01 8.14 -2.39 -0.02 -0.02 16 28 H 0.43 2.29 8.82 -92.70 -0.82 1.47 16 29 H 0.13 2.88 6.23 -2.91 -0.02 2.86 16 30 H 0.14 2.06 8.06 -2.91 -0.02 2.03 16 31 H 0.14 2.32 8.06 -2.91 -0.02 2.30 16 32 H 0.07 1.80 8.08 -2.39 -0.02 1.78 16 33 H 0.07 1.81 8.08 -2.38 -0.02 1.79 16 34 H 0.41 9.25 8.48 -92.71 -0.79 8.46 16 35 H 0.40 14.30 8.34 -92.71 -0.77 13.53 16 36 H -0.01 -0.93 8.14 -2.39 -0.02 -0.95 16 37 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 38 H 0.27 15.13 8.31 -92.71 -0.77 14.35 16 39 H 0.14 2.11 8.06 -2.91 -0.02 2.08 16 Total: -1.00 -80.94 342.48 -0.45 -81.39 By element: Atomic # 1 Polarization: 23.48 SS G_CDS: -1.27 Total: 22.21 kcal Atomic # 6 Polarization: 17.67 SS G_CDS: 5.60 Total: 23.27 kcal Atomic # 7 Polarization: -116.63 SS G_CDS: -6.69 Total: -123.32 kcal Atomic # 8 Polarization: -47.64 SS G_CDS: -0.11 Total: -47.75 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.20 kcal Total: -80.94 -0.45 -81.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426416335.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.815 kcal (2) G-P(sol) polarization free energy of solvation -80.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds