Wall clock time and date at job start Tue Mar 31 2020 06:36:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46495 * 120.00267 * 2 1 4 4 C 1.34778 * 119.99779 * 180.02562 * 2 1 3 5 5 O 1.21594 * 120.00197 * 359.97438 * 4 2 1 6 6 N 1.34777 * 120.00060 * 179.97438 * 4 2 1 7 7 C 1.39972 * 120.00232 * 184.57599 * 6 4 2 8 8 C 1.38983 * 120.00076 * 144.87314 * 7 6 4 9 9 C 1.38212 * 120.23013 * 180.02562 * 8 7 6 10 10 C 1.38029 * 120.21902 * 359.67036 * 9 8 7 11 11 C 1.39583 * 119.98951 * 0.60940 * 10 9 8 12 12 C 1.47856 * 120.10718 * 179.69133 * 11 10 9 13 13 O 1.21548 * 120.00029 * 179.71875 * 12 11 10 14 14 N 1.34780 * 120.00204 * 359.72613 * 12 11 10 15 15 C 1.46493 * 120.00104 * 179.97438 * 14 12 11 16 16 C 1.50697 * 109.47340 * 179.97438 * 15 14 12 17 17 H 1.08001 * 119.99778 * 0.02562 * 16 15 14 18 18 C 1.37877 * 120.00270 * 180.02562 * 16 15 14 19 19 N 1.31513 * 120.00076 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00012 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47358 * 60.00219 * 20 18 16 22 22 H 1.48505 * 109.47010 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47039 * 299.99965 * 20 18 16 24 24 C 1.38596 * 120.00123 * 324.90017 * 7 6 4 25 25 H 1.09008 * 109.47327 * 240.00034 * 1 2 3 26 26 H 1.09003 * 109.47458 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.47450 * 120.00264 * 1 2 3 28 28 H 1.09003 * 109.46992 * 269.99911 * 3 2 1 29 29 H 1.09004 * 109.47206 * 30.00074 * 3 2 1 30 30 H 1.08997 * 109.47431 * 150.00389 * 3 2 1 31 31 H 0.96998 * 119.99849 * 4.57847 * 6 4 2 32 32 H 1.08008 * 119.88669 * 0.02675 * 8 7 6 33 33 H 1.07999 * 119.89337 * 179.97438 * 9 8 7 34 34 H 1.07996 * 120.00416 * 180.30147 * 10 9 8 35 35 H 0.97002 * 120.00006 * 0.02562 * 14 12 11 36 36 H 1.08999 * 109.47357 * 60.00050 * 15 14 12 37 37 H 1.09002 * 109.47367 * 300.00279 * 15 14 12 38 38 H 0.97000 * 120.00255 * 179.97438 * 19 18 16 39 39 H 1.08001 * 120.10565 * 359.97438 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1388 -1.1672 -0.0005 5 8 1.5308 -2.2203 -0.0005 6 7 3.4866 -1.1673 -0.0010 7 6 4.1864 -2.3756 -0.0983 8 6 5.3861 -2.4295 -0.7979 9 6 6.0808 -3.6202 -0.8973 10 6 5.5911 -4.7624 -0.2968 11 6 4.3841 -4.7201 0.4031 12 6 3.8537 -5.9437 1.0416 13 8 2.8051 -5.9035 1.6550 14 7 4.5331 -7.1036 0.9438 15 6 4.0078 -8.3158 1.5769 16 6 4.9484 -9.4648 1.3199 17 1 5.8478 -9.3076 0.7429 18 6 4.6609 -10.7166 1.8212 19 7 3.5655 -10.9080 2.5233 20 14 5.8272 -12.1406 1.5031 21 1 7.1617 -11.8241 2.0724 22 1 5.2941 -13.3697 2.1438 23 1 5.9527 -12.3603 0.0398 24 6 3.6827 -3.5185 0.5025 25 1 -0.3634 -0.5139 0.8900 26 1 -0.3634 1.0277 0.0005 27 1 -0.3634 -0.5139 -0.8899 28 1 2.3792 1.5833 -1.0277 29 1 1.6084 2.0284 0.5139 30 1 3.1499 1.1383 0.5137 31 1 3.9716 -0.3300 0.0660 32 1 5.7770 -1.5378 -1.2654 33 1 7.0123 -3.6560 -1.4426 34 1 6.1392 -5.6899 -0.3726 35 1 5.3702 -7.1357 0.4548 36 1 3.0282 -8.5484 1.1596 37 1 3.9161 -8.1542 2.6510 38 1 3.3630 -11.7888 2.8757 39 1 2.7505 -3.4786 1.0466 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427610309.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:52 Heat of formation + Delta-G solvation = -24.312894 kcal Electronic energy + Delta-G solvation = -22265.552689 eV Core-core repulsion = 18787.802099 eV Total energy + Delta-G solvation = -3477.750590 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.91882 -39.38117 -37.85348 -35.84706 -34.89618 -34.15989 -32.31968 -30.94941 -29.86853 -28.26002 -27.20700 -26.15120 -23.97358 -22.61325 -22.08851 -20.29448 -19.82595 -18.63583 -17.90544 -16.63453 -16.37363 -16.19834 -15.50474 -15.42998 -15.01296 -14.54157 -14.38564 -14.21120 -14.07388 -13.71514 -13.46171 -13.11413 -13.00075 -12.81024 -12.58489 -12.32202 -11.97287 -11.79509 -11.69025 -11.45206 -10.95929 -10.84195 -10.49219 -10.27650 -10.07544 -9.36442 -9.07953 -9.06724 -8.82099 -8.68346 -8.16328 -7.80347 -6.11666 -4.18693 1.03964 1.42561 2.26852 2.88247 3.28831 3.33223 3.34916 3.41068 3.49554 4.11770 4.25961 4.40920 4.52571 4.77439 4.88326 4.90058 4.98146 5.11992 5.24142 5.26399 5.31812 5.37168 5.48965 5.56766 5.63687 5.92089 6.02607 6.22559 6.34831 6.44806 6.57576 6.62006 7.02791 7.37848 7.48530 7.53201 7.58151 7.71899 8.01910 8.28034 8.67373 8.82925 9.14911 9.47517 10.98601 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.029749 B = 0.002990 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.987111 B = 9362.135428 C =10190.551864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.637 5.637 3 C 0.078 3.922 4 C 0.699 3.301 5 O -0.556 6.556 6 N -0.685 5.685 7 C 0.147 3.853 8 C -0.132 4.132 9 C -0.109 4.109 10 C -0.104 4.104 11 C -0.102 4.102 12 C 0.538 3.462 13 O -0.546 6.546 14 N -0.705 5.705 15 C 0.249 3.751 16 C -0.543 4.543 17 H 0.063 0.937 18 C 0.064 3.936 19 N -0.885 5.885 20 Si 0.904 3.096 21 H -0.275 1.275 22 H -0.285 1.285 23 H -0.275 1.275 24 C -0.065 4.065 25 H 0.063 0.937 26 H 0.075 0.925 27 H 0.062 0.938 28 H 0.057 0.943 29 H 0.077 0.923 30 H 0.065 0.935 31 H 0.404 0.596 32 H 0.124 0.876 33 H 0.130 0.870 34 H 0.130 0.870 35 H 0.390 0.610 36 H 0.029 0.971 37 H 0.029 0.971 38 H 0.266 0.734 39 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.917 26.792 -7.711 28.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.375 5.375 3 C -0.066 4.066 4 C 0.401 3.599 5 O -0.431 6.431 6 N -0.335 5.335 7 C 0.052 3.948 8 C -0.153 4.153 9 C -0.127 4.127 10 C -0.123 4.123 11 C -0.106 4.106 12 C 0.323 3.677 13 O -0.425 6.425 14 N -0.354 5.354 15 C 0.128 3.872 16 C -0.582 4.582 17 H 0.081 0.919 18 C -0.140 4.140 19 N -0.523 5.523 20 Si 0.731 3.269 21 H -0.201 1.201 22 H -0.211 1.211 23 H -0.201 1.201 24 C -0.086 4.086 25 H 0.082 0.918 26 H 0.094 0.906 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.096 0.904 30 H 0.084 0.916 31 H 0.242 0.758 32 H 0.142 0.858 33 H 0.148 0.852 34 H 0.148 0.852 35 H 0.224 0.776 36 H 0.047 0.953 37 H 0.047 0.953 38 H 0.076 0.924 39 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 1.516 25.899 -7.153 26.912 hybrid contribution 1.265 -0.257 -0.382 1.346 sum 2.781 25.643 -7.535 26.871 Atomic orbital electron populations 1.21537 0.77136 1.02070 1.02877 1.46932 1.07339 1.04560 1.78707 1.21798 0.97076 0.85784 1.01900 1.15894 0.81505 0.84202 0.78341 1.91044 1.67232 1.29343 1.55464 1.42642 1.05007 1.08439 1.77367 1.17366 0.93103 0.85659 0.98635 1.20922 0.95663 0.98939 0.99758 1.20821 1.00012 0.91839 1.00071 1.21407 0.95085 0.98957 0.96866 1.20194 0.95569 0.94669 1.00152 1.18226 0.84822 0.83444 0.81225 1.90745 1.23063 1.85663 1.43023 1.46401 1.25042 1.09882 1.54034 1.19142 0.95181 0.79314 0.93512 1.21183 1.07791 0.93734 1.35461 0.91927 1.24952 0.95517 0.98822 0.94726 1.69969 1.24364 1.23467 1.34463 0.86467 0.80735 0.81121 0.78530 1.20065 1.21085 1.20061 1.21443 1.00425 0.90152 0.96606 0.91845 0.90588 0.91958 0.92399 0.90402 0.91606 0.75836 0.85759 0.85166 0.85171 0.77634 0.95311 0.95336 0.92393 0.82922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.85 10.16 59.84 0.61 1.46 16 2 N -0.64 -5.80 3.27 -195.34 -0.64 -6.44 16 3 C 0.08 0.34 10.21 59.84 0.61 0.95 16 4 C 0.70 9.25 8.12 -86.92 -0.71 8.54 16 5 O -0.56 -10.23 13.78 5.28 0.07 -10.16 16 6 N -0.68 -7.45 5.21 -14.25 -0.07 -7.53 16 7 C 0.15 1.98 6.29 -83.73 -0.53 1.45 16 8 C -0.13 -1.42 9.96 -39.32 -0.39 -1.81 16 9 C -0.11 -1.21 10.02 -39.67 -0.40 -1.61 16 10 C -0.10 -1.46 9.54 -39.16 -0.37 -1.84 16 11 C -0.10 -1.85 5.87 -104.99 -0.62 -2.47 16 12 C 0.54 12.26 7.77 -12.32 -0.10 12.17 16 13 O -0.55 -14.74 16.35 5.32 0.09 -14.65 16 14 N -0.71 -16.03 5.50 -62.43 -0.34 -16.37 16 15 C 0.25 6.91 5.43 -5.20 -0.03 6.88 16 16 C -0.54 -15.13 9.28 -34.44 -0.32 -15.45 16 17 H 0.06 1.61 7.60 -52.49 -0.40 1.22 16 18 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 19 N -0.89 -26.68 13.29 55.43 0.74 -25.94 16 20 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 21 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 22 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 23 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 24 C -0.07 -1.15 8.24 -38.98 -0.32 -1.47 16 25 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 26 H 0.08 0.34 7.79 -51.93 -0.40 -0.07 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.20 8.14 -51.93 -0.42 -0.23 16 29 H 0.08 0.21 7.92 -51.93 -0.41 -0.20 16 30 H 0.07 0.21 6.30 -51.93 -0.33 -0.12 16 31 H 0.40 2.73 6.52 -40.82 -0.27 2.47 16 32 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 33 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 34 H 0.13 1.64 6.40 -52.49 -0.34 1.31 16 35 H 0.39 7.52 6.35 -40.82 -0.26 7.26 16 36 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.03 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 39 H 0.15 3.17 5.81 -52.49 -0.30 2.87 16 LS Contribution 334.43 15.07 5.04 5.04 Total: -1.00 -37.83 334.43 -7.60 -45.43 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -4.80 Total: 5.93 kcal Atomic # 6 Polarization: 11.16 SS G_CDS: -2.65 Total: 8.51 kcal Atomic # 7 Polarization: -55.96 SS G_CDS: -0.32 Total: -56.28 kcal Atomic # 8 Polarization: -24.97 SS G_CDS: 0.16 Total: -24.81 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -37.83 -7.60 -45.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427610309.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.120 kcal (2) G-P(sol) polarization free energy of solvation -37.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds