Wall clock time and date at job start Tue Mar 31 2020 06:36:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46495 * 120.00267 * 2 1 4 4 C 1.34778 * 119.99779 * 180.02562 * 2 1 3 5 5 O 1.21594 * 120.00197 * 359.97438 * 4 2 1 6 6 N 1.34777 * 120.00060 * 179.97438 * 4 2 1 7 7 C 1.39972 * 120.00232 * 184.57599 * 6 4 2 8 8 C 1.38983 * 120.00076 * 144.87314 * 7 6 4 9 9 C 1.38212 * 120.23013 * 180.02562 * 8 7 6 10 10 C 1.38029 * 120.21902 * 359.67036 * 9 8 7 11 11 C 1.39583 * 119.98951 * 0.60940 * 10 9 8 12 12 C 1.47856 * 120.10718 * 179.69133 * 11 10 9 13 13 O 1.21548 * 120.00029 * 179.71875 * 12 11 10 14 14 N 1.34780 * 120.00204 * 359.72613 * 12 11 10 15 15 C 1.46493 * 120.00104 * 179.97438 * 14 12 11 16 16 C 1.50697 * 109.47340 * 179.97438 * 15 14 12 17 17 H 1.08001 * 119.99778 * 0.02562 * 16 15 14 18 18 C 1.37877 * 120.00270 * 180.02562 * 16 15 14 19 19 N 1.31513 * 120.00076 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00012 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47358 * 60.00219 * 20 18 16 22 22 H 1.48505 * 109.47010 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47039 * 299.99965 * 20 18 16 24 24 C 1.38596 * 120.00123 * 324.90017 * 7 6 4 25 25 H 1.09008 * 109.47327 * 240.00034 * 1 2 3 26 26 H 1.09003 * 109.47458 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.47450 * 120.00264 * 1 2 3 28 28 H 1.09003 * 109.46992 * 269.99911 * 3 2 1 29 29 H 1.09004 * 109.47206 * 30.00074 * 3 2 1 30 30 H 1.08997 * 109.47431 * 150.00389 * 3 2 1 31 31 H 0.96998 * 119.99849 * 4.57847 * 6 4 2 32 32 H 1.08008 * 119.88669 * 0.02675 * 8 7 6 33 33 H 1.07999 * 119.89337 * 179.97438 * 9 8 7 34 34 H 1.07996 * 120.00416 * 180.30147 * 10 9 8 35 35 H 0.97002 * 120.00006 * 0.02562 * 14 12 11 36 36 H 1.08999 * 109.47357 * 60.00050 * 15 14 12 37 37 H 1.09002 * 109.47367 * 300.00279 * 15 14 12 38 38 H 0.97000 * 120.00255 * 179.97438 * 19 18 16 39 39 H 1.08001 * 120.10565 * 359.97438 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1388 -1.1672 -0.0005 5 8 1.5308 -2.2203 -0.0005 6 7 3.4866 -1.1673 -0.0010 7 6 4.1864 -2.3756 -0.0983 8 6 5.3861 -2.4295 -0.7979 9 6 6.0808 -3.6202 -0.8973 10 6 5.5911 -4.7624 -0.2968 11 6 4.3841 -4.7201 0.4031 12 6 3.8537 -5.9437 1.0416 13 8 2.8051 -5.9035 1.6550 14 7 4.5331 -7.1036 0.9438 15 6 4.0078 -8.3158 1.5769 16 6 4.9484 -9.4648 1.3199 17 1 5.8478 -9.3076 0.7429 18 6 4.6609 -10.7166 1.8212 19 7 3.5655 -10.9080 2.5233 20 14 5.8272 -12.1406 1.5031 21 1 7.1617 -11.8241 2.0724 22 1 5.2941 -13.3697 2.1438 23 1 5.9527 -12.3603 0.0398 24 6 3.6827 -3.5185 0.5025 25 1 -0.3634 -0.5139 0.8900 26 1 -0.3634 1.0277 0.0005 27 1 -0.3634 -0.5139 -0.8899 28 1 2.3792 1.5833 -1.0277 29 1 1.6084 2.0284 0.5139 30 1 3.1499 1.1383 0.5137 31 1 3.9716 -0.3300 0.0660 32 1 5.7770 -1.5378 -1.2654 33 1 7.0123 -3.6560 -1.4426 34 1 6.1392 -5.6899 -0.3726 35 1 5.3702 -7.1357 0.4548 36 1 3.0282 -8.5484 1.1596 37 1 3.9161 -8.1542 2.6510 38 1 3.3630 -11.7888 2.8757 39 1 2.7505 -3.4786 1.0466 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427610309.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:52 Heat of formation + Delta-G solvation = -54.137573 kcal Electronic energy + Delta-G solvation = -22266.845984 eV Core-core repulsion = 18787.802099 eV Total energy + Delta-G solvation = -3479.043885 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.93195 -40.87033 -39.24849 -36.70970 -36.27468 -35.94193 -34.40638 -32.18977 -30.95528 -29.30143 -28.74455 -26.91690 -25.65706 -23.94435 -23.59339 -21.59619 -21.14202 -19.93798 -19.01061 -18.21461 -17.58771 -17.26486 -17.02790 -16.85298 -16.41088 -16.21987 -15.87314 -15.53838 -15.06995 -14.75606 -14.63977 -14.36313 -14.14965 -14.05764 -13.62547 -13.52768 -13.46057 -12.95971 -12.91194 -12.76835 -12.67692 -12.60669 -12.23660 -11.61170 -11.54182 -11.20072 -10.95216 -10.81518 -10.10038 -9.86086 -9.79627 -9.14701 -8.29962 -6.48088 -0.15291 0.32781 1.42701 1.45443 1.48333 1.56410 1.78142 2.04002 2.27806 2.49011 2.83668 2.90393 3.04718 3.77267 3.94840 4.12901 4.18035 4.23799 4.29596 4.45121 4.47044 4.51521 4.72681 4.84774 4.87026 4.91603 5.05608 5.17550 5.19449 5.31071 5.38655 5.41098 5.43032 5.47088 5.65909 5.76203 5.80297 5.96984 6.60899 6.74436 6.81305 7.19637 7.36173 7.37944 8.82629 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.029749 B = 0.002990 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.987111 B = 9362.135428 C =10190.551864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.631 5.631 3 C 0.069 3.931 4 C 0.686 3.314 5 O -0.621 6.621 6 N -0.667 5.667 7 C 0.143 3.857 8 C -0.101 4.101 9 C -0.091 4.091 10 C -0.100 4.100 11 C -0.133 4.133 12 C 0.532 3.468 13 O -0.605 6.605 14 N -0.696 5.696 15 C 0.265 3.735 16 C -0.557 4.557 17 H 0.088 0.912 18 C 0.001 3.999 19 N -0.933 5.933 20 Si 0.991 3.009 21 H -0.259 1.259 22 H -0.285 1.285 23 H -0.260 1.260 24 C -0.093 4.093 25 H 0.041 0.959 26 H 0.120 0.880 27 H 0.046 0.954 28 H 0.076 0.924 29 H 0.101 0.899 30 H 0.080 0.920 31 H 0.427 0.573 32 H 0.179 0.821 33 H 0.181 0.819 34 H 0.145 0.855 35 H 0.409 0.591 36 H -0.015 1.015 37 H -0.012 1.012 38 H 0.270 0.730 39 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.159 29.406 -10.333 31.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.368 5.368 3 C -0.072 4.072 4 C 0.388 3.612 5 O -0.501 6.501 6 N -0.319 5.319 7 C 0.048 3.952 8 C -0.122 4.122 9 C -0.109 4.109 10 C -0.120 4.120 11 C -0.137 4.137 12 C 0.321 3.679 13 O -0.488 6.488 14 N -0.345 5.345 15 C 0.143 3.857 16 C -0.595 4.595 17 H 0.106 0.894 18 C -0.198 4.198 19 N -0.571 5.571 20 Si 0.813 3.187 21 H -0.183 1.183 22 H -0.211 1.211 23 H -0.185 1.185 24 C -0.115 4.115 25 H 0.060 0.940 26 H 0.138 0.862 27 H 0.065 0.935 28 H 0.095 0.905 29 H 0.119 0.881 30 H 0.098 0.902 31 H 0.269 0.731 32 H 0.196 0.804 33 H 0.199 0.801 34 H 0.163 0.837 35 H 0.247 0.753 36 H 0.003 0.997 37 H 0.006 0.994 38 H 0.078 0.922 39 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 5.822 28.629 -9.805 30.816 hybrid contribution -0.103 -0.869 0.415 0.969 sum 5.719 27.759 -9.391 29.857 Atomic orbital electron populations 1.21653 0.76899 1.04312 1.01160 1.47092 1.07796 1.04966 1.76944 1.22164 0.97620 0.83741 1.03721 1.16302 0.82201 0.84520 0.78198 1.91019 1.68638 1.32139 1.58284 1.42420 1.04261 1.08637 1.76612 1.17492 0.94192 0.85110 0.98375 1.21505 0.93118 1.00830 0.96703 1.21386 1.01078 0.90231 0.98254 1.21625 0.93174 1.01219 0.95974 1.19772 0.98280 0.92248 1.03390 1.19130 0.83852 0.84809 0.80119 1.90696 1.25759 1.86705 1.45658 1.46077 1.25798 1.08620 1.54047 1.18615 0.94048 0.81862 0.91201 1.21567 1.08369 0.93695 1.35866 0.89373 1.26163 0.97362 1.02361 0.93922 1.70155 1.26840 1.24483 1.35668 0.85120 0.78236 0.76247 0.79072 1.18293 1.21093 1.18462 1.21194 0.99537 0.92254 0.98513 0.93971 0.86180 0.93485 0.90500 0.88088 0.90189 0.73093 0.80389 0.80131 0.83715 0.75308 0.99672 0.99392 0.92167 0.87627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.64 10.16 127.77 1.30 2.94 16 2 N -0.63 -10.92 3.27 -890.18 -2.91 -13.83 16 3 C 0.07 0.37 10.21 127.77 1.30 1.67 16 4 C 0.69 18.54 8.12 179.05 1.45 20.00 16 5 O -0.62 -24.98 13.78 -4.01 -0.06 -25.03 16 6 N -0.67 -13.48 5.21 -317.26 -1.65 -15.13 16 7 C 0.14 3.67 6.29 38.11 0.24 3.91 16 8 C -0.10 -1.65 9.96 22.44 0.22 -1.42 16 9 C -0.09 -1.54 10.02 22.21 0.22 -1.32 16 10 C -0.10 -2.63 9.54 22.54 0.22 -2.41 16 11 C -0.13 -5.04 5.87 -20.10 -0.12 -5.16 16 12 C 0.53 26.36 7.77 86.79 0.67 27.03 16 13 O -0.60 -36.47 16.35 -3.87 -0.06 -36.53 16 14 N -0.70 -33.46 5.50 -469.71 -2.58 -36.04 16 15 C 0.27 15.80 5.43 85.63 0.46 16.26 16 16 C -0.56 -31.69 9.28 25.60 0.24 -31.45 16 17 H 0.09 4.45 7.60 -2.91 -0.02 4.43 16 18 C 0.00 0.08 5.46 84.65 0.46 0.54 16 19 N -0.93 -58.54 13.29 21.45 0.28 -58.26 16 20 Si 0.99 43.33 29.54 68.60 2.03 45.36 16 21 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 22 H -0.29 -12.39 7.11 99.48 0.71 -11.68 16 23 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 24 C -0.09 -3.51 8.24 22.66 0.19 -3.32 16 25 H 0.04 0.85 8.14 -2.38 -0.02 0.83 16 26 H 0.12 0.81 7.79 -2.39 -0.02 0.79 16 27 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.08 0.19 8.14 -2.39 -0.02 0.17 16 29 H 0.10 0.13 7.92 -2.38 -0.02 0.11 16 30 H 0.08 0.20 6.30 -2.39 -0.02 0.19 16 31 H 0.43 4.24 6.52 -92.71 -0.60 3.63 16 32 H 0.18 1.12 8.06 -2.91 -0.02 1.09 16 33 H 0.18 1.41 8.06 -2.91 -0.02 1.39 16 34 H 0.15 3.26 6.40 -2.91 -0.02 3.24 16 35 H 0.41 15.97 6.35 -92.71 -0.59 15.38 16 36 H -0.01 -0.98 8.14 -2.39 -0.02 -1.00 16 37 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 38 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 39 H 0.11 4.98 5.81 -2.91 -0.02 4.96 16 Total: -1.00 -95.31 334.43 1.81 -93.50 By element: Atomic # 1 Polarization: 18.79 SS G_CDS: -0.10 Total: 18.70 kcal Atomic # 6 Polarization: 20.40 SS G_CDS: 6.87 Total: 27.26 kcal Atomic # 7 Polarization: -116.39 SS G_CDS: -6.87 Total: -123.26 kcal Atomic # 8 Polarization: -61.45 SS G_CDS: -0.12 Total: -61.56 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Total: -95.31 1.81 -93.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427610309.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.366 kcal (2) G-P(sol) polarization free energy of solvation -95.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds