Wall clock time and date at job start Tue Mar 31 2020 06:44:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35749 * 117.00872 * 2 1 4 4 C 1.38895 * 119.61897 * 180.02562 * 3 2 1 5 5 C 1.38328 * 119.19156 * 180.02562 * 4 3 2 6 6 C 1.39356 * 118.42329 * 359.97438 * 5 4 3 7 7 N 1.40192 * 120.42446 * 179.97438 * 6 5 4 8 8 C 1.34773 * 119.99933 * 152.43088 * 7 6 5 9 9 O 1.21595 * 120.00358 * 5.31615 * 8 7 6 10 10 N 1.34778 * 119.99602 * 185.30768 * 8 7 6 11 11 C 1.46501 * 119.99917 * 185.58938 * 10 8 7 12 12 C 1.52995 * 109.47293 * 175.68822 * 11 10 8 13 13 C 1.50696 * 115.55579 * 69.52046 * 12 11 10 14 14 H 1.07999 * 120.00273 * 264.10183 * 13 12 11 15 15 C 1.37882 * 119.99913 * 84.09709 * 13 12 11 16 16 N 1.31509 * 120.00197 * 176.10811 * 15 13 12 17 17 Si 1.86806 * 119.99650 * 356.10813 * 15 13 12 18 18 H 1.48496 * 109.47266 * 89.60319 * 17 15 13 19 19 H 1.48508 * 109.46739 * 209.59992 * 17 15 13 20 20 H 1.48501 * 109.47096 * 329.59527 * 17 15 13 21 21 C 1.53001 * 117.49575 * 283.85237 * 12 11 10 22 22 C 1.53000 * 117.49905 * 215.19610 * 12 11 10 23 23 C 1.38648 * 119.15630 * 359.97438 * 6 5 4 24 24 N 1.31952 * 120.73367 * 0.02562 * 23 6 5 25 25 H 1.08994 * 109.47506 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47315 * 300.00447 * 1 2 3 27 27 H 1.09007 * 109.46897 * 59.99575 * 1 2 3 28 28 H 1.08001 * 120.40350 * 0.02562 * 4 3 2 29 29 H 1.07991 * 120.78665 * 179.72631 * 5 4 3 30 30 H 0.97003 * 119.99843 * 332.43187 * 7 6 5 31 31 H 0.96993 * 120.00098 * 5.59326 * 10 8 7 32 32 H 1.09010 * 109.47498 * 295.68674 * 11 10 8 33 33 H 1.08999 * 109.47132 * 55.68046 * 11 10 8 34 34 H 0.97000 * 120.00027 * 180.02562 * 16 15 13 35 35 H 1.08999 * 117.50021 * 359.97438 * 21 12 11 36 36 H 1.09004 * 117.49684 * 145.01882 * 21 12 11 37 37 H 1.09005 * 117.50244 * 214.97786 * 22 12 11 38 38 H 1.09007 * 117.49812 * 359.97305 * 22 12 11 39 39 H 1.08000 * 119.63135 * 180.02562 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2094 0.0000 4 6 3.4329 1.2727 -0.0005 5 6 4.0519 2.5098 0.0000 6 6 3.2527 3.6514 0.0005 7 7 3.8358 4.9262 0.0016 8 6 3.1754 5.9698 -0.5380 9 8 2.0362 5.8271 -0.9384 10 7 3.7778 7.1717 -0.6338 11 6 3.0218 8.3343 -1.1062 12 6 3.9005 9.5837 -1.0189 13 6 5.0476 9.6412 -1.9944 14 1 6.0323 9.3189 -1.6897 15 6 4.8400 10.1053 -3.2761 16 7 5.8548 10.2277 -4.1036 17 14 3.1172 10.5600 -3.8371 18 1 2.8596 11.9908 -3.5346 19 1 2.9973 10.3340 -5.3000 20 1 2.1253 9.7165 -3.1231 21 6 4.1187 10.1986 0.3651 22 6 3.2180 10.9031 -0.6525 23 6 1.8734 3.5103 0.0000 24 7 1.3179 2.3134 -0.0006 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 4.0214 0.3671 -0.0014 29 1 5.1289 2.5890 0.0040 30 1 4.7147 5.0572 0.3908 31 1 4.7117 7.2669 -0.3901 32 1 2.7189 8.1748 -2.1411 33 1 2.1362 8.4686 -0.4851 34 1 5.7088 10.5545 -5.0051 35 1 3.6359 9.7132 1.2132 36 1 5.0918 10.6449 0.5697 37 1 3.5989 11.8128 -1.1168 38 1 2.1428 10.8811 -0.4741 39 1 1.2467 4.3899 -0.0001 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000429804394.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:34 Heat of formation + Delta-G solvation = 7.078035 kcal Electronic energy + Delta-G solvation = -22496.674530 eV Core-core repulsion = 19020.285153 eV Total energy + Delta-G solvation = -3476.389377 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.96963 -39.75725 -37.95686 -37.12919 -34.72242 -33.66941 -32.30076 -32.18676 -29.60187 -27.35489 -26.55030 -25.19048 -23.83451 -22.74165 -21.78039 -20.73063 -19.42686 -18.43913 -18.32838 -17.58752 -16.66914 -16.30553 -16.04620 -15.40422 -14.95183 -14.74592 -14.52288 -14.27295 -14.12385 -13.56680 -13.53169 -13.21659 -12.90151 -12.86461 -12.51795 -12.24704 -11.97173 -11.49450 -11.19390 -10.76900 -10.61692 -10.55605 -10.23027 -10.05363 -9.77007 -9.67801 -9.51524 -9.27138 -8.72697 -8.66703 -8.48686 -7.81928 -6.21216 -4.26323 1.12791 1.16816 2.71368 3.07209 3.25904 3.31153 3.36270 3.40570 3.81557 4.34744 4.35532 4.40724 4.81486 4.86837 4.89584 5.00454 5.07774 5.17073 5.20847 5.46946 5.58547 5.59688 5.70090 5.95475 5.98235 6.01395 6.13416 6.17958 6.35595 6.38887 6.64546 6.65355 6.92780 6.95165 7.02795 7.12558 7.19595 7.61894 7.85283 8.22440 8.34817 8.75283 8.78494 9.41829 10.89990 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.026690 B = 0.003236 C = 0.003217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.847422 B = 8650.983339 C = 8702.909440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.313 6.313 3 C 0.288 3.712 4 C -0.169 4.169 5 C -0.078 4.078 6 C 0.090 3.910 7 N -0.681 5.681 8 C 0.699 3.301 9 O -0.585 6.585 10 N -0.711 5.711 11 C 0.170 3.830 12 C -0.017 4.017 13 C -0.493 4.493 14 H 0.078 0.922 15 C 0.081 3.919 16 N -0.894 5.894 17 Si 0.876 3.124 18 H -0.276 1.276 19 H -0.292 1.292 20 H -0.255 1.255 21 C -0.177 4.177 22 C -0.190 4.190 23 C 0.129 3.871 24 N -0.520 5.520 25 H 0.092 0.908 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.142 0.858 29 H 0.144 0.856 30 H 0.408 0.592 31 H 0.403 0.597 32 H 0.068 0.932 33 H 0.046 0.954 34 H 0.266 0.734 35 H 0.073 0.927 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.074 0.926 39 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.721 -14.826 10.436 18.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.220 6.220 3 C 0.108 3.892 4 C -0.190 4.190 5 C -0.107 4.107 6 C -0.008 4.008 7 N -0.329 5.329 8 C 0.399 3.601 9 O -0.464 6.464 10 N -0.363 5.363 11 C 0.046 3.954 12 C -0.019 4.019 13 C -0.530 4.530 14 H 0.096 0.904 15 C -0.122 4.122 16 N -0.530 5.530 17 Si 0.703 3.297 18 H -0.202 1.202 19 H -0.219 1.219 20 H -0.179 1.179 21 C -0.214 4.214 22 C -0.228 4.228 23 C -0.030 4.030 24 N -0.243 5.243 25 H 0.111 0.889 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.160 0.840 29 H 0.162 0.838 30 H 0.244 0.756 31 H 0.238 0.762 32 H 0.086 0.914 33 H 0.065 0.935 34 H 0.076 0.924 35 H 0.091 0.909 36 H 0.106 0.894 37 H 0.109 0.891 38 H 0.093 0.907 39 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -6.490 -15.113 9.844 19.168 hybrid contribution 0.787 0.653 -0.253 1.054 sum -5.703 -14.460 9.591 18.265 Atomic orbital electron populations 1.22810 0.77511 1.02554 1.02529 1.86200 1.22681 1.24683 1.88460 1.19861 0.89463 0.84874 0.94974 1.20787 0.91875 0.98690 1.07628 1.21113 1.00346 0.90184 0.99044 1.18481 0.93584 0.84508 1.04218 1.42535 1.22313 1.05734 1.62299 1.16002 0.84751 0.80512 0.78796 1.90808 1.17483 1.82943 1.55127 1.45069 1.15237 1.06890 1.69094 1.21229 0.92148 0.83130 0.98895 1.19607 0.97590 0.89148 0.95519 1.20178 0.93778 1.44446 0.94638 0.90446 1.24958 0.96778 0.94127 0.96355 1.69881 1.30728 1.45492 1.06941 0.86917 0.85638 0.79495 0.77638 1.20231 1.21883 1.17904 1.22809 1.00490 1.05529 0.92616 1.22982 0.96642 0.98128 1.05043 1.23252 0.91982 0.94360 0.93375 1.67478 1.40344 0.98428 1.18063 0.88923 0.92416 0.92346 0.83974 0.83796 0.75611 0.76230 0.91394 0.93533 0.92404 0.90869 0.89396 0.89060 0.90727 0.79430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.39 10.38 101.05 1.05 1.44 16 2 O -0.31 -3.80 10.48 -18.96 -0.20 -4.00 16 3 C 0.29 3.82 7.49 -17.15 -0.13 3.69 16 4 C -0.17 -1.87 10.03 -39.31 -0.39 -2.26 16 5 C -0.08 -0.84 10.09 -39.13 -0.39 -1.23 16 6 C 0.09 1.20 6.45 -83.47 -0.54 0.66 16 7 N -0.68 -8.74 5.38 -14.09 -0.08 -8.82 16 8 C 0.70 11.78 8.44 -86.92 -0.73 11.05 16 9 O -0.58 -11.75 13.37 5.28 0.07 -11.68 16 10 N -0.71 -12.17 5.53 -65.22 -0.36 -12.53 16 11 C 0.17 3.39 5.01 -4.04 -0.02 3.37 16 12 C -0.02 -0.36 0.80 -155.66 -0.12 -0.49 16 13 C -0.49 -12.53 9.35 -34.44 -0.32 -12.85 16 14 H 0.08 2.12 8.06 -52.49 -0.42 1.70 16 15 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 16 N -0.89 -25.98 13.96 55.43 0.77 -25.21 16 17 Si 0.88 20.88 25.20 -169.99 -4.28 16.60 16 18 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 19 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 20 H -0.25 -5.82 5.47 56.52 0.31 -5.51 16 21 C -0.18 -3.20 9.96 -26.69 -0.27 -3.47 16 22 C -0.19 -3.72 7.81 -26.69 -0.21 -3.93 16 23 C 0.13 1.96 9.96 -17.35 -0.17 1.79 16 24 N -0.52 -7.71 9.20 -13.18 -0.12 -7.83 16 25 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.06 0.55 8.10 -51.93 -0.42 0.13 16 27 H 0.06 0.59 8.10 -51.93 -0.42 0.17 16 28 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 29 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 30 H 0.41 3.83 8.83 -40.82 -0.36 3.47 16 31 H 0.40 6.21 8.50 -40.82 -0.35 5.86 16 32 H 0.07 1.54 6.17 -51.92 -0.32 1.22 16 33 H 0.05 0.89 8.06 -51.93 -0.42 0.47 16 34 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 35 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 37 H 0.09 1.89 7.67 -51.93 -0.40 1.49 16 38 H 0.07 1.33 8.14 -51.92 -0.42 0.91 16 39 H 0.19 3.16 5.63 -52.49 -0.30 2.87 16 LS Contribution 330.16 15.07 4.98 4.98 Total: -1.00 -31.32 330.16 -6.74 -38.06 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: -5.17 Total: 10.54 kcal Atomic # 6 Polarization: 2.23 SS G_CDS: -2.35 Total: -0.12 kcal Atomic # 7 Polarization: -54.60 SS G_CDS: 0.22 Total: -54.38 kcal Atomic # 8 Polarization: -15.55 SS G_CDS: -0.13 Total: -15.68 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -4.28 Total: 16.60 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.32 -6.74 -38.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000429804394.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.136 kcal (2) G-P(sol) polarization free energy of solvation -31.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds