Wall clock time and date at job start Tue Mar 31 2020 06:44:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35749 * 117.00872 * 2 1 4 4 C 1.38895 * 119.61897 * 180.02562 * 3 2 1 5 5 C 1.38328 * 119.19156 * 180.02562 * 4 3 2 6 6 C 1.39356 * 118.42329 * 359.97438 * 5 4 3 7 7 N 1.40192 * 120.42446 * 179.97438 * 6 5 4 8 8 C 1.34773 * 119.99933 * 152.43088 * 7 6 5 9 9 O 1.21595 * 120.00358 * 5.31615 * 8 7 6 10 10 N 1.34778 * 119.99602 * 185.30768 * 8 7 6 11 11 C 1.46501 * 119.99917 * 185.58938 * 10 8 7 12 12 C 1.52995 * 109.47293 * 175.68822 * 11 10 8 13 13 C 1.50696 * 115.55579 * 69.52046 * 12 11 10 14 14 H 1.07999 * 120.00273 * 264.10183 * 13 12 11 15 15 C 1.37882 * 119.99913 * 84.09709 * 13 12 11 16 16 N 1.31509 * 120.00197 * 176.10811 * 15 13 12 17 17 Si 1.86806 * 119.99650 * 356.10813 * 15 13 12 18 18 H 1.48496 * 109.47266 * 89.60319 * 17 15 13 19 19 H 1.48508 * 109.46739 * 209.59992 * 17 15 13 20 20 H 1.48501 * 109.47096 * 329.59527 * 17 15 13 21 21 C 1.53001 * 117.49575 * 283.85237 * 12 11 10 22 22 C 1.53000 * 117.49905 * 215.19610 * 12 11 10 23 23 C 1.38648 * 119.15630 * 359.97438 * 6 5 4 24 24 N 1.31952 * 120.73367 * 0.02562 * 23 6 5 25 25 H 1.08994 * 109.47506 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47315 * 300.00447 * 1 2 3 27 27 H 1.09007 * 109.46897 * 59.99575 * 1 2 3 28 28 H 1.08001 * 120.40350 * 0.02562 * 4 3 2 29 29 H 1.07991 * 120.78665 * 179.72631 * 5 4 3 30 30 H 0.97003 * 119.99843 * 332.43187 * 7 6 5 31 31 H 0.96993 * 120.00098 * 5.59326 * 10 8 7 32 32 H 1.09010 * 109.47498 * 295.68674 * 11 10 8 33 33 H 1.08999 * 109.47132 * 55.68046 * 11 10 8 34 34 H 0.97000 * 120.00027 * 180.02562 * 16 15 13 35 35 H 1.08999 * 117.50021 * 359.97438 * 21 12 11 36 36 H 1.09004 * 117.49684 * 145.01882 * 21 12 11 37 37 H 1.09005 * 117.50244 * 214.97786 * 22 12 11 38 38 H 1.09007 * 117.49812 * 359.97305 * 22 12 11 39 39 H 1.08000 * 119.63135 * 180.02562 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2094 0.0000 4 6 3.4329 1.2727 -0.0005 5 6 4.0519 2.5098 0.0000 6 6 3.2527 3.6514 0.0005 7 7 3.8358 4.9262 0.0016 8 6 3.1754 5.9698 -0.5380 9 8 2.0362 5.8271 -0.9384 10 7 3.7778 7.1717 -0.6338 11 6 3.0218 8.3343 -1.1062 12 6 3.9005 9.5837 -1.0189 13 6 5.0476 9.6412 -1.9944 14 1 6.0323 9.3189 -1.6897 15 6 4.8400 10.1053 -3.2761 16 7 5.8548 10.2277 -4.1036 17 14 3.1172 10.5600 -3.8371 18 1 2.8596 11.9908 -3.5346 19 1 2.9973 10.3340 -5.3000 20 1 2.1253 9.7165 -3.1231 21 6 4.1187 10.1986 0.3651 22 6 3.2180 10.9031 -0.6525 23 6 1.8734 3.5103 0.0000 24 7 1.3179 2.3134 -0.0006 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 4.0214 0.3671 -0.0014 29 1 5.1289 2.5890 0.0040 30 1 4.7147 5.0572 0.3908 31 1 4.7117 7.2669 -0.3901 32 1 2.7189 8.1748 -2.1411 33 1 2.1362 8.4686 -0.4851 34 1 5.7088 10.5545 -5.0051 35 1 3.6359 9.7132 1.2132 36 1 5.0918 10.6449 0.5697 37 1 3.5989 11.8128 -1.1168 38 1 2.1428 10.8811 -0.4741 39 1 1.2467 4.3899 -0.0001 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000429804394.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:34 Heat of formation + Delta-G solvation = -17.434549 kcal Electronic energy + Delta-G solvation = -22497.737476 eV Core-core repulsion = 19020.285153 eV Total energy + Delta-G solvation = -3477.452323 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.04621 -40.92859 -39.13332 -38.51817 -35.89437 -35.10807 -34.20601 -33.25842 -30.64553 -28.52499 -27.92492 -26.91213 -24.85720 -23.76294 -23.27902 -22.00303 -21.10223 -19.63118 -19.34388 -18.85908 -18.06817 -17.68070 -17.02396 -16.92739 -16.48009 -16.08095 -15.75918 -15.44361 -15.12005 -15.01617 -14.76134 -14.46100 -14.30016 -14.19451 -13.87458 -13.82810 -13.07908 -12.73537 -12.63230 -12.45118 -12.16948 -11.95110 -11.65571 -11.59622 -11.32792 -10.96017 -10.74008 -10.68197 -10.52191 -10.36067 -9.95934 -8.87395 -8.29597 -6.35456 0.12798 0.22275 1.35297 1.41158 1.48605 1.54994 2.02369 2.20717 2.37232 2.79448 3.02596 3.08835 3.40876 3.43902 3.89697 3.99274 4.04164 4.12193 4.39328 4.43523 4.45206 4.47670 4.53299 4.65012 4.71980 4.78952 4.85516 4.90781 5.05266 5.12926 5.16948 5.32830 5.50720 5.57371 5.61725 5.71100 5.95839 6.24339 6.29253 6.73275 6.83639 7.02121 7.35355 7.46623 8.84928 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.026690 B = 0.003236 C = 0.003217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.847422 B = 8650.983339 C = 8702.909440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.318 6.318 3 C 0.272 3.728 4 C -0.161 4.161 5 C -0.061 4.061 6 C 0.077 3.923 7 N -0.661 5.661 8 C 0.698 3.302 9 O -0.619 6.619 10 N -0.708 5.708 11 C 0.180 3.820 12 C -0.040 4.040 13 C -0.478 4.478 14 H 0.047 0.953 15 C 0.028 3.972 16 N -0.944 5.944 17 Si 0.923 3.077 18 H -0.266 1.266 19 H -0.304 1.304 20 H -0.239 1.239 21 C -0.148 4.148 22 C -0.192 4.192 23 C 0.104 3.896 24 N -0.541 5.541 25 H 0.125 0.875 26 H 0.053 0.947 27 H 0.047 0.953 28 H 0.174 0.826 29 H 0.184 0.816 30 H 0.427 0.573 31 H 0.411 0.589 32 H 0.037 0.963 33 H 0.059 0.941 34 H 0.264 0.736 35 H 0.104 0.896 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.098 0.902 39 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.771 -16.194 12.220 20.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.225 6.225 3 C 0.093 3.907 4 C -0.182 4.182 5 C -0.088 4.088 6 C -0.021 4.021 7 N -0.311 5.311 8 C 0.398 3.602 9 O -0.500 6.500 10 N -0.361 5.361 11 C 0.056 3.944 12 C -0.041 4.041 13 C -0.516 4.516 14 H 0.065 0.935 15 C -0.170 4.170 16 N -0.584 5.584 17 Si 0.749 3.251 18 H -0.191 1.191 19 H -0.231 1.231 20 H -0.162 1.162 21 C -0.185 4.185 22 C -0.230 4.230 23 C -0.053 4.053 24 N -0.265 5.265 25 H 0.143 0.857 26 H 0.072 0.928 27 H 0.066 0.934 28 H 0.192 0.808 29 H 0.202 0.798 30 H 0.266 0.734 31 H 0.247 0.753 32 H 0.055 0.945 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.122 0.878 36 H 0.104 0.896 37 H 0.096 0.904 38 H 0.117 0.883 39 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -6.518 -16.498 11.681 21.239 hybrid contribution 0.843 0.943 -0.735 1.463 sum -5.675 -15.554 10.946 19.848 Atomic orbital electron populations 1.22993 0.76399 1.04495 1.01810 1.86203 1.23854 1.24117 1.88345 1.20288 0.90610 0.84764 0.95066 1.21217 0.91144 1.00084 1.05720 1.21515 1.02001 0.88765 0.96565 1.18585 0.93238 0.85222 1.05050 1.42231 1.22678 1.04765 1.61403 1.16100 0.84416 0.80970 0.78668 1.90807 1.19149 1.83544 1.56550 1.44892 1.15478 1.06547 1.69222 1.20893 0.92578 0.83431 0.97523 1.19417 0.97235 0.90551 0.96875 1.20386 0.94075 1.41998 0.95140 0.93466 1.25670 0.99657 0.94854 0.96863 1.70011 1.32751 1.48245 1.07394 0.86137 0.82412 0.79964 0.76571 1.19100 1.23135 1.16215 1.22842 1.00325 1.03430 0.91936 1.23046 0.98265 0.96421 1.05234 1.22941 0.92909 0.93958 0.95531 1.67356 1.41354 0.98804 1.19013 0.85658 0.92822 0.93401 0.80809 0.79832 0.73397 0.75251 0.94502 0.92243 0.92721 0.87757 0.89580 0.90433 0.88343 0.81872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.68 10.38 113.37 1.18 1.86 16 2 O -0.32 -7.23 10.48 -90.75 -0.95 -8.18 16 3 C 0.27 6.87 7.49 84.79 0.63 7.50 16 4 C -0.16 -3.06 10.03 22.45 0.23 -2.84 16 5 C -0.06 -1.09 10.09 22.56 0.23 -0.86 16 6 C 0.08 1.93 6.45 38.17 0.25 2.18 16 7 N -0.66 -15.82 5.38 -316.77 -1.71 -17.52 16 8 C 0.70 22.93 8.44 179.05 1.51 24.44 16 9 O -0.62 -25.04 13.37 -4.02 -0.05 -25.09 16 10 N -0.71 -23.38 5.53 -478.52 -2.64 -26.03 16 11 C 0.18 6.97 5.01 86.38 0.43 7.41 16 12 C -0.04 -1.59 0.80 -52.93 -0.04 -1.64 16 13 C -0.48 -24.43 9.35 25.60 0.24 -24.19 16 14 H 0.05 2.64 8.06 -2.91 -0.02 2.61 16 15 C 0.03 1.52 5.47 84.66 0.46 1.99 16 16 N -0.94 -56.49 13.96 21.45 0.30 -56.19 16 17 Si 0.92 43.22 25.20 68.60 1.73 44.95 16 18 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 19 H -0.30 -14.71 7.11 99.48 0.71 -14.00 16 20 H -0.24 -10.48 5.47 99.48 0.54 -9.94 16 21 C -0.15 -4.92 9.96 30.62 0.30 -4.61 16 22 C -0.19 -7.02 7.81 30.62 0.24 -6.78 16 23 C 0.10 3.19 9.96 84.77 0.84 4.04 16 24 N -0.54 -16.05 9.20 -308.45 -2.84 -18.89 16 25 H 0.13 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.05 1.00 8.10 -2.39 -0.02 0.98 16 27 H 0.05 0.95 8.10 -2.38 -0.02 0.93 16 28 H 0.17 2.19 8.06 -2.91 -0.02 2.17 16 29 H 0.18 1.81 8.06 -2.92 -0.02 1.78 16 30 H 0.43 6.84 8.83 -92.71 -0.82 6.02 16 31 H 0.41 12.05 8.50 -92.71 -0.79 11.26 16 32 H 0.04 1.65 6.17 -2.38 -0.01 1.64 16 33 H 0.06 2.15 8.06 -2.39 -0.02 2.13 16 34 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 35 H 0.10 2.87 8.14 -2.39 -0.02 2.85 16 36 H 0.09 2.91 8.14 -2.38 -0.02 2.89 16 37 H 0.08 3.06 7.67 -2.38 -0.02 3.05 16 38 H 0.10 3.15 8.14 -2.38 -0.02 3.14 16 39 H 0.16 5.76 5.63 -2.91 -0.02 5.75 16 Total: -1.00 -70.38 330.16 -0.34 -70.72 By element: Atomic # 1 Polarization: 28.41 SS G_CDS: -0.67 Total: 27.74 kcal Atomic # 6 Polarization: 1.99 SS G_CDS: 6.50 Total: 8.49 kcal Atomic # 7 Polarization: -111.74 SS G_CDS: -6.89 Total: -118.63 kcal Atomic # 8 Polarization: -32.27 SS G_CDS: -1.00 Total: -33.27 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 1.73 Total: 44.95 kcal Total: -70.38 -0.34 -70.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000429804394.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.285 kcal (2) G-P(sol) polarization free energy of solvation -70.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds