Wall clock time and date at job start Tue Mar 31 2020 06:44:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35750 * 117.00013 * 2 1 4 4 N 1.32154 * 119.72345 * 0.02562 * 3 2 1 5 5 C 1.31996 * 121.71919 * 180.02562 * 4 3 2 6 6 C 1.38074 * 120.96697 * 359.97438 * 5 4 3 7 7 C 1.38741 * 119.34790 * 0.02601 * 6 5 4 8 8 C 1.38939 * 118.42736 * 359.97438 * 7 6 5 9 9 N 1.40172 * 120.50835 * 180.02562 * 8 7 6 10 10 C 1.34776 * 119.99793 * 17.62148 * 9 8 7 11 11 O 1.21591 * 120.00023 * 5.68060 * 10 9 8 12 12 N 1.34776 * 120.00050 * 185.67275 * 10 9 8 13 13 C 1.46498 * 120.00152 * 180.02562 * 12 10 9 14 14 C 1.52999 * 109.46988 * 185.84176 * 13 12 10 15 15 C 1.50697 * 115.54793 * 59.08694 * 14 13 12 16 16 H 1.08000 * 119.99819 * 265.94060 * 15 14 13 17 17 C 1.37877 * 120.00502 * 85.94593 * 15 14 13 18 18 N 1.31522 * 119.99645 * 354.43286 * 17 15 14 19 19 Si 1.86799 * 120.00430 * 174.43875 * 17 15 14 20 20 H 1.48501 * 109.47001 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47100 * 119.99466 * 19 17 15 22 22 H 1.48495 * 109.46933 * 239.99549 * 19 17 15 23 23 C 1.52996 * 117.50297 * 273.41105 * 14 13 12 24 24 C 1.53007 * 117.49636 * 204.74819 * 14 13 12 25 25 H 1.09000 * 109.47423 * 60.00363 * 1 2 3 26 26 H 1.09003 * 109.46954 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47368 * 299.99681 * 1 2 3 28 28 H 1.08002 * 119.51766 * 179.97438 * 5 4 3 29 29 H 1.08003 * 120.32251 * 179.97438 * 6 5 4 30 30 H 1.08000 * 120.78443 * 179.73218 * 7 6 5 31 31 H 0.96997 * 120.00014 * 197.62530 * 9 8 7 32 32 H 0.97005 * 119.99530 * 0.02562 * 12 10 9 33 33 H 1.09000 * 109.46908 * 305.84540 * 13 12 10 34 34 H 1.09000 * 109.47073 * 65.84534 * 13 12 10 35 35 H 0.97002 * 119.99942 * 185.06828 * 18 17 15 36 36 H 1.09009 * 117.49578 * 0.02562 * 23 14 13 37 37 H 1.08993 * 117.50352 * 145.02113 * 23 14 13 38 38 H 1.09000 * 117.49913 * 214.98343 * 24 14 13 39 39 H 1.08998 * 117.49742 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2095 0.0000 4 7 1.3202 2.3144 0.0005 5 6 1.8781 3.5106 0.0000 6 6 3.2514 3.6541 -0.0005 7 6 4.0533 2.5219 -0.0011 8 6 3.4385 1.2759 -0.0006 9 7 4.2067 0.1034 -0.0006 10 6 5.5066 0.1495 0.3523 11 8 5.9871 1.1857 0.7692 12 7 6.2740 -0.9531 0.2432 13 6 7.6868 -0.9033 0.6272 14 6 8.3589 -2.2312 0.2725 15 6 8.3101 -2.6157 -1.1838 16 1 7.5197 -3.2558 -1.5470 17 6 9.2745 -2.1504 -2.0524 18 7 10.1725 -1.2848 -1.6354 19 14 9.3054 -2.7494 -3.8215 20 1 8.1966 -3.7133 -4.0372 21 1 9.1419 -1.5929 -4.7386 22 1 10.6027 -3.4184 -4.0949 23 6 8.2836 -3.3588 1.3038 24 6 9.6062 -2.6257 1.0659 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.2513 4.3901 0.0001 29 1 3.6968 4.6379 -0.0013 30 1 5.1299 2.6071 -0.0059 31 1 3.8027 -0.7410 -0.2546 32 1 5.8906 -1.7797 -0.0897 33 1 8.1803 -0.0919 0.0922 34 1 7.7657 -0.7315 1.7007 35 1 10.8050 -0.9016 -2.2632 36 1 7.7548 -3.1547 2.2350 37 1 8.1991 -4.3788 0.9291 38 1 10.3913 -3.1638 0.5347 39 1 9.9482 -1.9391 1.8403 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000429813064.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:37 Heat of formation + Delta-G solvation = 3.868551 kcal Electronic energy + Delta-G solvation = -22827.967304 eV Core-core repulsion = 19351.438753 eV Total energy + Delta-G solvation = -3476.528551 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.97230 -39.45716 -37.80752 -36.87435 -34.78282 -33.55290 -32.01211 -31.56557 -29.77953 -27.32141 -26.27895 -25.23918 -23.37782 -22.85939 -21.25298 -20.44133 -19.45434 -18.62035 -18.06355 -17.44355 -16.39453 -16.07727 -16.00613 -15.18953 -15.01734 -14.67304 -14.45973 -14.24101 -13.98664 -13.48952 -13.38725 -13.02438 -12.78747 -12.49665 -12.05625 -11.83429 -11.62513 -11.28759 -11.04662 -10.99343 -10.83477 -10.55755 -10.30364 -10.13014 -9.65413 -9.47336 -9.14724 -9.02572 -8.53362 -8.44625 -8.16310 -7.69635 -6.11634 -4.20553 1.16933 1.35842 2.90159 2.99695 3.22476 3.31884 3.33511 3.46557 3.93781 4.31514 4.35036 4.59325 4.89800 5.11510 5.13748 5.16613 5.20610 5.27079 5.34446 5.44421 5.56605 5.93175 5.99920 6.20246 6.28294 6.39501 6.42012 6.49236 6.65749 6.73393 6.75854 7.04748 7.16468 7.23151 7.30696 7.37205 7.48450 7.77728 7.82590 8.29112 8.41479 8.80366 8.93759 9.46806 10.96191 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.018673 B = 0.003791 C = 0.003738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.138210 B = 7384.127579 C = 7489.073999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 O -0.313 6.313 3 C 0.278 3.722 4 N -0.519 5.519 5 C 0.095 3.905 6 C -0.180 4.180 7 C -0.075 4.075 8 C 0.125 3.875 9 N -0.675 5.675 10 C 0.698 3.302 11 O -0.586 6.586 12 N -0.707 5.707 13 C 0.179 3.821 14 C 0.025 3.975 15 C -0.500 4.500 16 H 0.060 0.940 17 C 0.075 3.925 18 N -0.873 5.873 19 Si 0.889 3.111 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.283 1.283 23 C -0.211 4.211 24 C -0.145 4.145 25 H 0.057 0.943 26 H 0.094 0.906 27 H 0.056 0.944 28 H 0.156 0.844 29 H 0.138 0.862 30 H 0.178 0.822 31 H 0.412 0.588 32 H 0.399 0.601 33 H 0.075 0.925 34 H 0.035 0.965 35 H 0.261 0.739 36 H 0.065 0.935 37 H 0.078 0.922 38 H 0.084 0.916 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.488 4.524 2.899 16.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.221 6.221 3 C 0.095 3.905 4 N -0.243 5.243 5 C -0.060 4.060 6 C -0.201 4.201 7 C -0.103 4.103 8 C 0.025 3.975 9 N -0.322 5.322 10 C 0.399 3.601 11 O -0.465 6.465 12 N -0.358 5.358 13 C 0.056 3.944 14 C 0.025 3.975 15 C -0.537 4.537 16 H 0.078 0.922 17 C -0.130 4.130 18 N -0.509 5.509 19 Si 0.717 3.283 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.209 1.209 23 C -0.249 4.249 24 C -0.183 4.183 25 H 0.075 0.925 26 H 0.112 0.888 27 H 0.075 0.925 28 H 0.174 0.826 29 H 0.156 0.844 30 H 0.195 0.805 31 H 0.248 0.752 32 H 0.233 0.767 33 H 0.093 0.907 34 H 0.054 0.946 35 H 0.071 0.929 36 H 0.084 0.916 37 H 0.097 0.903 38 H 0.103 0.897 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -15.516 5.077 3.229 16.642 hybrid contribution 0.362 -0.854 -1.297 1.595 sum -15.154 4.223 1.932 15.849 Atomic orbital electron populations 1.22787 0.77285 1.02686 1.02243 1.86164 1.22841 1.24383 1.88702 1.19388 0.87364 0.85447 0.98262 1.67231 1.39835 0.98512 1.18677 1.22229 0.93072 0.93295 0.97443 1.21978 0.94303 0.99724 1.04087 1.22254 1.03801 0.89065 0.95213 1.17636 0.87010 0.87925 1.04888 1.42528 1.09720 1.09574 1.70340 1.16009 0.80122 0.85011 0.78992 1.90752 1.72878 1.29957 1.52947 1.45159 1.11680 1.11224 1.67786 1.20935 0.77067 1.00044 0.96337 1.19045 0.96917 0.89321 0.92263 1.20349 1.11035 1.31515 0.90842 0.92174 1.24979 0.94812 0.94752 0.98422 1.69982 1.18527 1.27927 1.34494 0.86586 0.78015 0.78788 0.84901 1.19735 1.21041 1.20922 1.23061 1.03083 0.98232 1.00495 1.22477 0.91492 1.02516 1.01843 0.92477 0.88808 0.92496 0.82647 0.84418 0.80476 0.75245 0.76667 0.90655 0.94632 0.92866 0.91602 0.90331 0.89727 0.91613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.43 10.38 101.05 1.05 1.48 16 2 O -0.31 -4.04 9.83 -18.96 -0.19 -4.22 16 3 C 0.28 4.00 7.51 -16.95 -0.13 3.87 16 4 N -0.52 -6.95 9.22 -13.17 -0.12 -7.08 16 5 C 0.10 1.10 11.17 -17.54 -0.20 0.90 16 6 C -0.18 -2.18 10.10 -39.46 -0.40 -2.58 16 7 C -0.08 -1.16 8.91 -39.14 -0.35 -1.51 16 8 C 0.13 1.96 6.56 -83.32 -0.55 1.41 16 9 N -0.68 -10.57 5.35 -14.00 -0.07 -10.65 16 10 C 0.70 13.13 8.43 -86.92 -0.73 12.40 16 11 O -0.59 -12.56 13.20 5.29 0.07 -12.49 16 12 N -0.71 -13.42 5.39 -65.23 -0.35 -13.77 16 13 C 0.18 3.93 5.54 -4.04 -0.02 3.91 16 14 C 0.03 0.58 1.45 -155.66 -0.23 0.35 16 15 C -0.50 -12.52 8.45 -34.44 -0.29 -12.81 16 16 H 0.06 1.48 7.82 -52.49 -0.41 1.07 16 17 C 0.07 1.94 5.39 -17.82 -0.10 1.85 16 18 N -0.87 -23.81 12.86 55.43 0.71 -23.09 16 19 Si 0.89 20.31 29.54 -169.99 -5.02 15.29 16 20 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 C -0.21 -4.26 9.94 -26.69 -0.27 -4.52 16 24 C -0.15 -3.22 9.38 -26.69 -0.25 -3.47 16 25 H 0.06 0.53 8.11 -51.93 -0.42 0.10 16 26 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.53 8.11 -51.93 -0.42 0.11 16 28 H 0.16 1.25 8.06 -52.49 -0.42 0.83 16 29 H 0.14 1.29 8.06 -52.48 -0.42 0.86 16 30 H 0.18 3.08 5.41 -52.49 -0.28 2.80 16 31 H 0.41 5.48 8.25 -40.82 -0.34 5.15 16 32 H 0.40 6.87 8.31 -40.82 -0.34 6.53 16 33 H 0.08 1.90 8.12 -51.93 -0.42 1.48 16 34 H 0.04 0.76 8.11 -51.93 -0.42 0.34 16 35 H 0.26 6.87 8.32 -40.82 -0.34 6.53 16 36 H 0.07 1.21 8.14 -51.92 -0.42 0.79 16 37 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 38 H 0.08 2.01 8.14 -51.93 -0.42 1.59 16 39 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 LS Contribution 337.34 15.07 5.08 5.08 Total: -1.00 -29.65 337.34 -7.49 -37.14 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: -5.15 Total: 12.52 kcal Atomic # 6 Polarization: 3.72 SS G_CDS: -2.45 Total: 1.26 kcal Atomic # 7 Polarization: -54.75 SS G_CDS: 0.17 Total: -54.58 kcal Atomic # 8 Polarization: -16.60 SS G_CDS: -0.12 Total: -16.71 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -29.65 -7.49 -37.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000429813064.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.011 kcal (2) G-P(sol) polarization free energy of solvation -29.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds