Wall clock time and date at job start Tue Mar 31 2020 06:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35750 * 117.00013 * 2 1 4 4 N 1.32154 * 119.72345 * 0.02562 * 3 2 1 5 5 C 1.31996 * 121.71919 * 180.02562 * 4 3 2 6 6 C 1.38074 * 120.96697 * 359.97438 * 5 4 3 7 7 C 1.38741 * 119.34790 * 0.02601 * 6 5 4 8 8 C 1.38939 * 118.42736 * 359.97438 * 7 6 5 9 9 N 1.40172 * 120.50835 * 180.02562 * 8 7 6 10 10 C 1.34776 * 119.99793 * 17.62148 * 9 8 7 11 11 O 1.21591 * 120.00023 * 5.68060 * 10 9 8 12 12 N 1.34776 * 120.00050 * 185.67275 * 10 9 8 13 13 C 1.46498 * 120.00152 * 180.02562 * 12 10 9 14 14 C 1.52999 * 109.46988 * 185.84176 * 13 12 10 15 15 C 1.50697 * 115.54793 * 59.08694 * 14 13 12 16 16 H 1.08000 * 119.99819 * 265.94060 * 15 14 13 17 17 C 1.37877 * 120.00502 * 85.94593 * 15 14 13 18 18 N 1.31522 * 119.99645 * 354.43286 * 17 15 14 19 19 Si 1.86799 * 120.00430 * 174.43875 * 17 15 14 20 20 H 1.48501 * 109.47001 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47100 * 119.99466 * 19 17 15 22 22 H 1.48495 * 109.46933 * 239.99549 * 19 17 15 23 23 C 1.52996 * 117.50297 * 273.41105 * 14 13 12 24 24 C 1.53007 * 117.49636 * 204.74819 * 14 13 12 25 25 H 1.09000 * 109.47423 * 60.00363 * 1 2 3 26 26 H 1.09003 * 109.46954 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47368 * 299.99681 * 1 2 3 28 28 H 1.08002 * 119.51766 * 179.97438 * 5 4 3 29 29 H 1.08003 * 120.32251 * 179.97438 * 6 5 4 30 30 H 1.08000 * 120.78443 * 179.73218 * 7 6 5 31 31 H 0.96997 * 120.00014 * 197.62530 * 9 8 7 32 32 H 0.97005 * 119.99530 * 0.02562 * 12 10 9 33 33 H 1.09000 * 109.46908 * 305.84540 * 13 12 10 34 34 H 1.09000 * 109.47073 * 65.84534 * 13 12 10 35 35 H 0.97002 * 119.99942 * 185.06828 * 18 17 15 36 36 H 1.09009 * 117.49578 * 0.02562 * 23 14 13 37 37 H 1.08993 * 117.50352 * 145.02113 * 23 14 13 38 38 H 1.09000 * 117.49913 * 214.98343 * 24 14 13 39 39 H 1.08998 * 117.49742 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2095 0.0000 4 7 1.3202 2.3144 0.0005 5 6 1.8781 3.5106 0.0000 6 6 3.2514 3.6541 -0.0005 7 6 4.0533 2.5219 -0.0011 8 6 3.4385 1.2759 -0.0006 9 7 4.2067 0.1034 -0.0006 10 6 5.5066 0.1495 0.3523 11 8 5.9871 1.1857 0.7692 12 7 6.2740 -0.9531 0.2432 13 6 7.6868 -0.9033 0.6272 14 6 8.3589 -2.2312 0.2725 15 6 8.3101 -2.6157 -1.1838 16 1 7.5197 -3.2558 -1.5470 17 6 9.2745 -2.1504 -2.0524 18 7 10.1725 -1.2848 -1.6354 19 14 9.3054 -2.7494 -3.8215 20 1 8.1966 -3.7133 -4.0372 21 1 9.1419 -1.5929 -4.7386 22 1 10.6027 -3.4184 -4.0949 23 6 8.2836 -3.3588 1.3038 24 6 9.6062 -2.6257 1.0659 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.2513 4.3901 0.0001 29 1 3.6968 4.6379 -0.0013 30 1 5.1299 2.6071 -0.0059 31 1 3.8027 -0.7410 -0.2546 32 1 5.8906 -1.7797 -0.0897 33 1 8.1803 -0.0919 0.0922 34 1 7.7657 -0.7315 1.7007 35 1 10.8050 -0.9016 -2.2632 36 1 7.7548 -3.1547 2.2350 37 1 8.1991 -4.3788 0.9291 38 1 10.3913 -3.1638 0.5347 39 1 9.9482 -1.9391 1.8403 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000429813064.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:36 Heat of formation + Delta-G solvation = -17.134262 kcal Electronic energy + Delta-G solvation = -22828.878055 eV Core-core repulsion = 19351.438753 eV Total energy + Delta-G solvation = -3477.439301 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.12502 -40.78516 -38.84322 -38.52427 -36.09928 -35.14200 -33.96259 -32.64269 -30.89054 -28.21085 -27.94677 -27.05882 -24.52966 -23.90861 -22.94871 -21.89356 -21.23356 -19.81966 -19.17335 -18.84434 -17.79293 -17.49173 -17.04823 -16.67205 -16.45149 -16.22435 -15.84151 -15.68028 -15.19458 -14.86591 -14.58354 -14.40175 -14.22947 -13.80286 -13.46584 -13.42476 -12.91934 -12.85291 -12.64242 -12.34669 -12.19603 -12.09130 -12.01261 -11.51209 -11.39591 -10.88174 -10.65891 -10.44499 -10.32203 -10.09577 -9.84191 -8.84681 -8.09396 -6.21993 0.12291 0.27658 1.40340 1.44685 1.52953 1.55017 2.05293 2.06830 2.42407 2.84836 3.13476 3.19903 3.46708 3.57040 3.87393 4.15936 4.20028 4.27787 4.47140 4.49079 4.53486 4.56365 4.67652 4.72367 4.80918 4.91382 4.98416 5.03177 5.22199 5.28848 5.31412 5.54914 5.60979 5.64004 5.69532 5.78927 5.96717 6.23544 6.37478 6.81588 6.84940 7.01497 7.46470 7.48532 8.98181 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.018673 B = 0.003791 C = 0.003738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.138210 B = 7384.127579 C = 7489.073999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.323 6.323 3 C 0.277 3.723 4 N -0.525 5.525 5 C 0.107 3.893 6 C -0.176 4.176 7 C -0.094 4.094 8 C 0.095 3.905 9 N -0.663 5.663 10 C 0.698 3.302 11 O -0.616 6.616 12 N -0.704 5.704 13 C 0.197 3.803 14 C 0.003 3.997 15 C -0.501 4.501 16 H 0.063 0.937 17 C 0.027 3.973 18 N -0.906 5.906 19 Si 0.946 3.054 20 H -0.262 1.262 21 H -0.289 1.289 22 H -0.285 1.285 23 C -0.178 4.178 24 C -0.156 4.156 25 H 0.059 0.941 26 H 0.121 0.879 27 H 0.057 0.943 28 H 0.198 0.802 29 H 0.166 0.834 30 H 0.152 0.848 31 H 0.422 0.578 32 H 0.408 0.592 33 H 0.033 0.967 34 H 0.040 0.960 35 H 0.258 0.742 36 H 0.090 0.910 37 H 0.085 0.915 38 H 0.063 0.937 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.978 4.379 2.932 18.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.230 6.230 3 C 0.095 3.905 4 N -0.248 5.248 5 C -0.049 4.049 6 C -0.196 4.196 7 C -0.122 4.122 8 C -0.004 4.004 9 N -0.310 5.310 10 C 0.398 3.602 11 O -0.498 6.498 12 N -0.356 5.356 13 C 0.072 3.928 14 C 0.002 3.998 15 C -0.539 4.539 16 H 0.081 0.919 17 C -0.174 4.174 18 N -0.544 5.544 19 Si 0.773 3.227 20 H -0.186 1.186 21 H -0.216 1.216 22 H -0.211 1.211 23 C -0.215 4.215 24 C -0.194 4.194 25 H 0.077 0.923 26 H 0.139 0.861 27 H 0.076 0.924 28 H 0.215 0.785 29 H 0.184 0.816 30 H 0.169 0.831 31 H 0.260 0.740 32 H 0.244 0.756 33 H 0.052 0.948 34 H 0.058 0.942 35 H 0.067 0.933 36 H 0.109 0.891 37 H 0.104 0.896 38 H 0.081 0.919 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -18.069 4.897 3.250 19.001 hybrid contribution 1.016 -0.732 -1.282 1.792 sum -17.053 4.165 1.967 17.664 Atomic orbital electron populations 1.23047 0.75431 1.04600 1.02340 1.86151 1.24668 1.23799 1.88422 1.19429 0.86965 0.86290 0.97830 1.67372 1.39723 0.98850 1.18893 1.22940 0.93275 0.93936 0.94734 1.22272 0.94542 0.99895 1.02912 1.22175 1.03030 0.90491 0.96484 1.17818 0.87785 0.87729 1.07114 1.42260 1.08498 1.10425 1.69790 1.16081 0.80981 0.84328 0.78783 1.90745 1.73830 1.30967 1.54239 1.44932 1.10668 1.11834 1.68163 1.20510 0.78210 0.98201 0.95860 1.19073 0.97956 0.90705 0.92062 1.20658 1.10497 1.30615 0.92105 0.91890 1.25656 0.94882 0.95047 1.01829 1.70102 1.19453 1.29394 1.35431 0.85694 0.78015 0.78135 0.80895 1.18620 1.21592 1.21101 1.23048 1.00738 0.97463 1.00211 1.22414 0.91623 1.03331 1.02073 0.92272 0.86084 0.92423 0.78526 0.81614 0.83097 0.74025 0.75576 0.94820 0.94172 0.93278 0.89134 0.89643 0.91853 0.90927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.67 10.38 113.37 1.18 1.85 16 2 O -0.32 -7.81 9.83 -90.76 -0.89 -8.70 16 3 C 0.28 7.61 7.51 84.94 0.64 8.25 16 4 N -0.52 -12.85 9.22 -308.47 -2.84 -15.69 16 5 C 0.11 2.14 11.17 84.63 0.95 3.08 16 6 C -0.18 -3.93 10.10 22.35 0.23 -3.71 16 7 C -0.09 -2.88 8.91 22.56 0.20 -2.68 16 8 C 0.09 2.93 6.56 38.28 0.25 3.18 16 9 N -0.66 -20.77 5.35 -316.47 -1.69 -22.46 16 10 C 0.70 26.70 8.43 179.05 1.51 28.21 16 11 O -0.62 -27.36 13.20 -4.00 -0.05 -27.41 16 12 N -0.70 -26.84 5.39 -478.54 -2.58 -29.41 16 13 C 0.20 8.76 5.54 86.38 0.48 9.24 16 14 C 0.00 0.13 1.45 -52.93 -0.08 0.05 16 15 C -0.50 -25.03 8.45 25.60 0.22 -24.81 16 16 H 0.06 3.05 7.82 -2.91 -0.02 3.02 16 17 C 0.03 1.40 5.39 84.65 0.46 1.85 16 18 N -0.91 -50.65 12.86 21.45 0.28 -50.38 16 19 Si 0.95 41.95 29.54 68.60 2.03 43.98 16 20 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 21 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 22 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 23 C -0.18 -6.83 9.94 30.62 0.30 -6.53 16 24 C -0.16 -6.93 9.38 30.62 0.29 -6.65 16 25 H 0.06 0.96 8.11 -2.39 -0.02 0.94 16 26 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.06 0.95 8.11 -2.39 -0.02 0.93 16 28 H 0.20 2.24 8.06 -2.91 -0.02 2.22 16 29 H 0.17 2.67 8.06 -2.91 -0.02 2.64 16 30 H 0.15 5.49 5.41 -2.91 -0.02 5.48 16 31 H 0.42 11.05 8.25 -92.71 -0.77 10.28 16 32 H 0.41 13.84 8.31 -92.70 -0.77 13.07 16 33 H 0.03 1.77 8.12 -2.39 -0.02 1.75 16 34 H 0.04 1.73 8.11 -2.39 -0.02 1.71 16 35 H 0.26 13.97 8.32 -92.71 -0.77 13.20 16 36 H 0.09 3.06 8.14 -2.38 -0.02 3.04 16 37 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 38 H 0.06 3.06 8.14 -2.39 -0.02 3.04 16 39 H 0.07 3.07 8.14 -2.39 -0.02 3.05 16 Total: -1.00 -64.88 337.34 0.41 -64.47 By element: Atomic # 1 Polarization: 34.73 SS G_CDS: -0.45 Total: 34.29 kcal Atomic # 6 Polarization: 4.71 SS G_CDS: 6.61 Total: 11.32 kcal Atomic # 7 Polarization: -111.10 SS G_CDS: -6.84 Total: -117.94 kcal Atomic # 8 Polarization: -35.17 SS G_CDS: -0.95 Total: -36.11 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.98 kcal Total: -64.88 0.41 -64.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000429813064.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.332 kcal (2) G-P(sol) polarization free energy of solvation -64.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds