Wall clock time and date at job start Tue Mar 31 2020 06:24:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35962 * 119.61655 * 2 1 4 4 C 1.35248 * 120.81920 * 179.97438 * 3 2 1 5 5 C 1.40216 * 120.03943 * 359.97438 * 4 3 2 6 6 C 1.36796 * 119.23248 * 359.97438 * 5 4 3 7 7 N 1.40217 * 120.39997 * 179.97438 * 6 5 4 8 8 C 1.34777 * 120.00103 * 121.06602 * 7 6 5 9 9 O 1.21593 * 120.00030 * 4.89073 * 8 7 6 10 10 N 1.34775 * 119.99880 * 184.89184 * 8 7 6 11 11 C 1.46499 * 119.99724 * 180.02562 * 10 8 7 12 12 C 1.53008 * 109.46992 * 184.78609 * 11 10 8 13 13 C 1.50703 * 115.54925 * 304.61311 * 12 11 10 14 14 H 1.07992 * 119.99997 * 99.42740 * 13 12 11 15 15 C 1.37878 * 119.99927 * 279.15895 * 13 12 11 16 16 N 1.31523 * 120.00141 * 355.33759 * 15 13 12 17 17 Si 1.86796 * 120.00209 * 175.33633 * 15 13 12 18 18 H 1.48500 * 109.47068 * 89.99952 * 17 15 13 19 19 H 1.48500 * 109.47245 * 209.99948 * 17 15 13 20 20 H 1.48503 * 109.46838 * 330.00215 * 17 15 13 21 21 C 1.52993 * 117.51813 * 90.31392 * 12 11 10 22 22 C 1.53000 * 117.49717 * 158.94470 * 12 11 10 23 23 C 1.34676 * 119.61479 * 180.22548 * 2 1 3 24 24 O 1.22060 * 120.03019 * 0.02562 * 23 2 1 25 25 H 1.09004 * 109.46996 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.46897 * 119.99657 * 1 2 3 27 27 H 1.09003 * 109.46871 * 239.99735 * 1 2 3 28 28 H 1.08001 * 119.58986 * 359.97438 * 3 2 1 29 29 H 1.08000 * 119.98420 * 179.97438 * 4 3 2 30 30 H 1.07992 * 120.38801 * 179.97438 * 5 4 3 31 31 H 0.96997 * 119.99737 * 301.07397 * 7 6 5 32 32 H 0.97005 * 120.00190 * 359.97438 * 10 8 7 33 33 H 1.08996 * 109.47320 * 64.78748 * 11 10 8 34 34 H 1.08997 * 109.47326 * 304.78557 * 11 10 8 35 35 H 0.96993 * 120.00188 * 185.00647 * 16 15 13 36 36 H 1.09002 * 117.49975 * 214.96897 * 21 12 11 37 37 H 1.09000 * 117.50046 * 359.97438 * 21 12 11 38 38 H 1.08994 * 117.50032 * 359.97438 * 22 12 11 39 39 H 1.09002 * 117.49572 * 144.97399 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1369 1.1820 0.0000 4 6 3.4891 1.2104 0.0005 5 6 4.2163 0.0115 0.0016 6 6 3.5422 -1.1788 0.0027 7 7 4.2449 -2.3922 0.0032 8 6 4.0617 -3.2765 1.0037 9 8 3.2231 -3.0630 1.8579 10 7 4.8082 -4.3974 1.0573 11 6 4.6087 -5.3589 2.1445 12 6 5.6537 -6.4716 2.0394 13 6 5.7016 -7.1956 0.7185 14 1 6.4504 -6.9334 -0.0141 15 6 4.7928 -8.1965 0.4477 16 7 3.9437 -8.5824 1.3750 17 14 4.7676 -9.0046 -1.2362 18 1 5.6816 -10.1750 -1.2373 19 1 3.3873 -9.4542 -1.5490 20 1 5.2140 -8.0270 -2.2611 21 6 6.9751 -6.2729 2.7844 22 6 5.9498 -7.2840 3.3016 23 6 2.1305 -1.1708 -0.0046 24 8 1.5137 -2.2241 -0.0092 25 1 -0.3633 1.0277 0.0005 26 1 -0.3633 -0.5138 -0.8900 27 1 -0.3633 -0.5139 0.8900 28 1 1.5840 2.1097 -0.0004 29 1 4.0091 2.1570 0.0001 30 1 5.2961 0.0276 0.0016 31 1 4.8628 -2.5950 -0.7164 32 1 5.4769 -4.5679 0.3756 33 1 3.6103 -5.7899 2.0698 34 1 4.7142 -4.8507 3.1029 35 1 3.3538 -9.3344 1.2098 36 1 7.8792 -6.6660 2.3193 37 1 7.1005 -5.3492 3.3494 38 1 5.4006 -7.0257 4.2068 39 1 6.1790 -8.3424 3.1766 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000432159661.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:32 Heat of formation + Delta-G solvation = 6.248619 kcal Electronic energy + Delta-G solvation = -23066.669676 eV Core-core repulsion = 19590.244333 eV Total energy + Delta-G solvation = -3476.425344 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.35651 -39.20947 -36.86034 -36.67100 -35.39421 -33.24282 -32.69227 -31.92996 -29.12470 -27.73355 -26.16379 -25.13017 -23.28609 -22.75662 -21.12266 -20.39191 -19.36226 -18.02841 -17.74166 -17.18674 -16.76767 -16.01997 -15.86271 -15.30913 -14.73081 -14.49583 -14.42190 -14.05712 -13.88787 -13.20042 -13.10836 -12.86687 -12.62343 -12.55391 -12.27595 -11.85178 -11.75058 -11.54395 -10.95955 -10.89220 -10.49090 -10.40142 -10.18379 -9.90175 -9.63386 -9.38270 -9.02250 -8.96786 -8.45928 -8.21772 -7.95342 -7.60336 -6.02447 -4.12052 0.76814 1.91586 2.51858 3.28211 3.29420 3.37843 3.38570 3.64032 3.96272 4.39167 4.43592 4.50982 4.87368 4.88624 5.08909 5.14531 5.21197 5.27466 5.42349 5.46550 5.67409 5.95055 6.07784 6.11039 6.39250 6.42254 6.56303 6.64390 6.76266 6.87214 6.95358 7.10976 7.16332 7.40121 7.45935 7.47431 7.65984 7.86256 8.17367 8.39295 8.73533 8.89277 9.32206 9.55116 11.05227 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.020885 B = 0.004012 C = 0.003736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.329280 B = 6978.068848 C = 7493.470375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.502 5.502 3 C 0.116 3.884 4 C -0.218 4.218 5 C -0.053 4.053 6 C 0.065 3.935 7 N -0.685 5.685 8 C 0.702 3.298 9 O -0.582 6.582 10 N -0.714 5.714 11 C 0.183 3.817 12 C 0.028 3.972 13 C -0.502 4.502 14 H 0.060 0.940 15 C 0.075 3.925 16 N -0.872 5.872 17 Si 0.890 3.110 18 H -0.281 1.281 19 H -0.286 1.286 20 H -0.273 1.273 21 C -0.210 4.210 22 C -0.147 4.147 23 C 0.511 3.489 24 O -0.510 6.510 25 H 0.086 0.914 26 H 0.078 0.922 27 H 0.080 0.920 28 H 0.159 0.841 29 H 0.146 0.854 30 H 0.135 0.865 31 H 0.404 0.596 32 H 0.398 0.602 33 H 0.066 0.934 34 H 0.037 0.963 35 H 0.261 0.739 36 H 0.077 0.923 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.101 21.235 -4.569 21.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.216 5.216 3 C -0.011 4.011 4 C -0.242 4.242 5 C -0.077 4.077 6 C -0.034 4.034 7 N -0.337 5.337 8 C 0.402 3.598 9 O -0.458 6.458 10 N -0.367 5.367 11 C 0.060 3.940 12 C 0.027 3.973 13 C -0.539 4.539 14 H 0.078 0.922 15 C -0.129 4.129 16 N -0.508 5.508 17 Si 0.718 3.282 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.198 1.198 21 C -0.247 4.247 22 C -0.186 4.186 23 C 0.308 3.692 24 O -0.388 6.388 25 H 0.104 0.896 26 H 0.097 0.903 27 H 0.099 0.901 28 H 0.177 0.823 29 H 0.163 0.837 30 H 0.153 0.847 31 H 0.240 0.760 32 H 0.232 0.768 33 H 0.084 0.916 34 H 0.055 0.945 35 H 0.071 0.929 36 H 0.095 0.905 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -2.522 20.502 -3.705 20.986 hybrid contribution 0.534 -0.675 -1.537 1.761 sum -1.989 19.827 -5.241 20.604 Atomic orbital electron populations 1.22074 0.77283 1.03425 1.04611 1.45422 1.08990 1.06531 1.60634 1.21898 0.93894 0.89186 0.96114 1.20393 0.92359 0.98780 1.12691 1.21436 1.00874 0.90900 0.94509 1.17885 0.89974 0.86329 1.09223 1.42204 1.47180 1.17365 1.26958 1.15977 0.81810 0.80259 0.81752 1.90885 1.36500 1.77390 1.41045 1.45050 1.40207 1.20120 1.31317 1.20788 1.00430 0.87067 0.85754 1.19036 0.90416 0.94649 0.93228 1.20316 1.15265 1.19224 0.99124 0.92213 1.24985 0.94747 0.96588 0.96627 1.69980 1.21855 1.25803 1.33128 0.86630 0.77289 0.79596 0.84700 1.20736 1.21210 1.19822 1.23006 0.95067 0.99986 1.06674 1.22480 1.01775 0.96709 0.97610 1.17236 0.88829 0.83089 0.80075 1.91034 1.69149 1.29146 1.49450 0.89568 0.90317 0.90111 0.82343 0.83673 0.84668 0.75991 0.76767 0.91595 0.94504 0.92870 0.90469 0.91676 0.91771 0.89717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.61 10.06 59.85 0.60 1.21 16 2 N -0.50 -6.02 2.99 -126.95 -0.38 -6.40 16 3 C 0.12 0.92 10.30 -16.79 -0.17 0.74 16 4 C -0.22 -1.75 10.00 -39.90 -0.40 -2.15 16 5 C -0.05 -0.58 10.01 -39.36 -0.39 -0.97 16 6 C 0.06 1.02 5.78 -83.43 -0.48 0.54 16 7 N -0.68 -11.62 5.19 -14.07 -0.07 -11.69 16 8 C 0.70 15.28 8.07 -86.92 -0.70 14.58 16 9 O -0.58 -15.09 14.85 -12.95 -0.19 -15.28 16 10 N -0.71 -15.39 5.42 -65.22 -0.35 -15.74 16 11 C 0.18 4.47 5.56 -4.04 -0.02 4.44 16 12 C 0.03 0.67 1.54 -155.66 -0.24 0.43 16 13 C -0.50 -13.18 8.10 -34.44 -0.28 -13.45 16 14 H 0.06 1.52 7.82 -52.49 -0.41 1.11 16 15 C 0.08 2.04 5.44 -17.82 -0.10 1.95 16 16 N -0.87 -25.00 12.85 55.43 0.71 -24.29 16 17 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 18 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 19 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 21 C -0.21 -4.51 9.93 -26.73 -0.27 -4.78 16 22 C -0.15 -3.48 9.42 -26.73 -0.25 -3.73 16 23 C 0.51 8.86 6.93 -15.19 -0.11 8.76 16 24 O -0.51 -11.43 15.32 -13.37 -0.20 -11.64 16 25 H 0.09 0.39 7.72 -51.93 -0.40 -0.01 16 26 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.16 0.53 7.82 -52.49 -0.41 0.12 16 29 H 0.15 0.68 8.06 -52.49 -0.42 0.25 16 30 H 0.14 1.17 8.06 -52.49 -0.42 0.74 16 31 H 0.40 5.42 8.84 -40.82 -0.36 5.06 16 32 H 0.40 7.78 7.99 -40.82 -0.33 7.46 16 33 H 0.07 1.85 8.14 -51.93 -0.42 1.43 16 34 H 0.04 0.88 8.09 -51.93 -0.42 0.46 16 35 H 0.26 7.22 8.32 -40.82 -0.34 6.88 16 36 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 37 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 38 H 0.06 1.45 8.14 -51.93 -0.42 1.02 16 39 H 0.08 2.11 8.14 -51.93 -0.42 1.69 16 LS Contribution 338.33 15.07 5.10 5.10 Total: -1.00 -37.42 338.33 -8.49 -45.91 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: -5.27 Total: 10.34 kcal Atomic # 6 Polarization: 10.37 SS G_CDS: -2.81 Total: 7.56 kcal Atomic # 7 Polarization: -58.02 SS G_CDS: -0.09 Total: -58.12 kcal Atomic # 8 Polarization: -26.52 SS G_CDS: -0.40 Total: -26.92 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -37.42 -8.49 -45.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000432159661.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.158 kcal (2) G-P(sol) polarization free energy of solvation -37.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds