Wall clock time and date at job start Tue Mar 31 2020 06:24:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35962 * 119.61655 * 2 1 4 4 C 1.35248 * 120.81920 * 179.97438 * 3 2 1 5 5 C 1.40216 * 120.03943 * 359.97438 * 4 3 2 6 6 C 1.36796 * 119.23248 * 359.97438 * 5 4 3 7 7 N 1.40217 * 120.39997 * 179.97438 * 6 5 4 8 8 C 1.34777 * 120.00103 * 121.06602 * 7 6 5 9 9 O 1.21593 * 120.00030 * 4.89073 * 8 7 6 10 10 N 1.34775 * 119.99880 * 184.89184 * 8 7 6 11 11 C 1.46499 * 119.99724 * 180.02562 * 10 8 7 12 12 C 1.53008 * 109.46992 * 184.78609 * 11 10 8 13 13 C 1.50703 * 115.54925 * 304.61311 * 12 11 10 14 14 H 1.07992 * 119.99997 * 99.42740 * 13 12 11 15 15 C 1.37878 * 119.99927 * 279.15895 * 13 12 11 16 16 N 1.31523 * 120.00141 * 355.33759 * 15 13 12 17 17 Si 1.86796 * 120.00209 * 175.33633 * 15 13 12 18 18 H 1.48500 * 109.47068 * 89.99952 * 17 15 13 19 19 H 1.48500 * 109.47245 * 209.99948 * 17 15 13 20 20 H 1.48503 * 109.46838 * 330.00215 * 17 15 13 21 21 C 1.52993 * 117.51813 * 90.31392 * 12 11 10 22 22 C 1.53000 * 117.49717 * 158.94470 * 12 11 10 23 23 C 1.34676 * 119.61479 * 180.22548 * 2 1 3 24 24 O 1.22060 * 120.03019 * 0.02562 * 23 2 1 25 25 H 1.09004 * 109.46996 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.46897 * 119.99657 * 1 2 3 27 27 H 1.09003 * 109.46871 * 239.99735 * 1 2 3 28 28 H 1.08001 * 119.58986 * 359.97438 * 3 2 1 29 29 H 1.08000 * 119.98420 * 179.97438 * 4 3 2 30 30 H 1.07992 * 120.38801 * 179.97438 * 5 4 3 31 31 H 0.96997 * 119.99737 * 301.07397 * 7 6 5 32 32 H 0.97005 * 120.00190 * 359.97438 * 10 8 7 33 33 H 1.08996 * 109.47320 * 64.78748 * 11 10 8 34 34 H 1.08997 * 109.47326 * 304.78557 * 11 10 8 35 35 H 0.96993 * 120.00188 * 185.00647 * 16 15 13 36 36 H 1.09002 * 117.49975 * 214.96897 * 21 12 11 37 37 H 1.09000 * 117.50046 * 359.97438 * 21 12 11 38 38 H 1.08994 * 117.50032 * 359.97438 * 22 12 11 39 39 H 1.09002 * 117.49572 * 144.97399 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1369 1.1820 0.0000 4 6 3.4891 1.2104 0.0005 5 6 4.2163 0.0115 0.0016 6 6 3.5422 -1.1788 0.0027 7 7 4.2449 -2.3922 0.0032 8 6 4.0617 -3.2765 1.0037 9 8 3.2231 -3.0630 1.8579 10 7 4.8082 -4.3974 1.0573 11 6 4.6087 -5.3589 2.1445 12 6 5.6537 -6.4716 2.0394 13 6 5.7016 -7.1956 0.7185 14 1 6.4504 -6.9334 -0.0141 15 6 4.7928 -8.1965 0.4477 16 7 3.9437 -8.5824 1.3750 17 14 4.7676 -9.0046 -1.2362 18 1 5.6816 -10.1750 -1.2373 19 1 3.3873 -9.4542 -1.5490 20 1 5.2140 -8.0270 -2.2611 21 6 6.9751 -6.2729 2.7844 22 6 5.9498 -7.2840 3.3016 23 6 2.1305 -1.1708 -0.0046 24 8 1.5137 -2.2241 -0.0092 25 1 -0.3633 1.0277 0.0005 26 1 -0.3633 -0.5138 -0.8900 27 1 -0.3633 -0.5139 0.8900 28 1 1.5840 2.1097 -0.0004 29 1 4.0091 2.1570 0.0001 30 1 5.2961 0.0276 0.0016 31 1 4.8628 -2.5950 -0.7164 32 1 5.4769 -4.5679 0.3756 33 1 3.6103 -5.7899 2.0698 34 1 4.7142 -4.8507 3.1029 35 1 3.3538 -9.3344 1.2098 36 1 7.8792 -6.6660 2.3193 37 1 7.1005 -5.3492 3.3494 38 1 5.4006 -7.0257 4.2068 39 1 6.1790 -8.3424 3.1766 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000432159661.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:31 Heat of formation + Delta-G solvation = -21.240781 kcal Electronic energy + Delta-G solvation = -23067.861706 eV Core-core repulsion = 19590.244333 eV Total energy + Delta-G solvation = -3477.617373 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.39980 -40.76724 -38.59977 -37.88519 -36.64371 -34.97790 -34.02709 -33.82646 -30.18663 -28.57167 -28.00282 -27.05545 -24.34135 -23.73363 -22.93824 -21.93719 -21.28824 -19.47742 -18.97901 -18.30280 -18.01700 -17.57922 -16.89961 -16.69786 -16.49543 -16.19801 -15.73975 -15.62389 -15.26086 -14.93329 -14.45195 -14.14850 -13.85642 -13.57205 -13.50161 -13.40325 -13.02136 -12.95355 -12.81913 -12.71445 -12.38358 -12.01814 -11.64520 -11.45902 -11.24429 -10.97252 -10.93757 -10.46422 -10.30812 -10.07187 -9.73234 -8.67086 -8.10392 -6.24364 -0.11887 1.00021 1.39629 1.43224 1.50676 1.54459 1.97211 2.26112 2.41013 2.72332 3.17864 3.33748 3.57597 3.77800 3.94597 4.17252 4.24445 4.26970 4.37380 4.49385 4.53790 4.66679 4.71467 4.74152 4.84356 4.99478 5.02842 5.14008 5.27227 5.29681 5.50563 5.60743 5.63255 5.72311 5.77456 5.81851 6.03729 6.16611 6.35997 6.83632 7.07189 7.20591 7.45602 7.71080 8.97348 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.020885 B = 0.004012 C = 0.003736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.329280 B = 6978.068848 C = 7493.470375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.500 5.500 3 C 0.133 3.867 4 C -0.221 4.221 5 C -0.008 4.008 6 C -0.016 4.016 7 N -0.667 5.667 8 C 0.698 3.302 9 O -0.630 6.630 10 N -0.710 5.710 11 C 0.201 3.799 12 C 0.003 3.997 13 C -0.502 4.502 14 H 0.068 0.932 15 C 0.023 3.977 16 N -0.909 5.909 17 Si 0.950 3.050 18 H -0.272 1.272 19 H -0.297 1.297 20 H -0.262 1.262 21 C -0.172 4.172 22 C -0.158 4.158 23 C 0.488 3.512 24 O -0.593 6.593 25 H 0.146 0.854 26 H 0.068 0.932 27 H 0.056 0.944 28 H 0.221 0.779 29 H 0.196 0.804 30 H 0.163 0.837 31 H 0.417 0.583 32 H 0.408 0.592 33 H 0.014 0.986 34 H 0.036 0.964 35 H 0.257 0.743 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.067 0.933 39 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.623 25.561 -5.859 26.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.211 5.211 3 C 0.007 3.993 4 C -0.244 4.244 5 C -0.032 4.032 6 C -0.113 4.113 7 N -0.319 5.319 8 C 0.398 3.602 9 O -0.511 6.511 10 N -0.364 5.364 11 C 0.076 3.924 12 C 0.002 3.998 13 C -0.540 4.540 14 H 0.086 0.914 15 C -0.178 4.178 16 N -0.547 5.547 17 Si 0.776 3.224 18 H -0.198 1.198 19 H -0.224 1.224 20 H -0.186 1.186 21 C -0.209 4.209 22 C -0.196 4.196 23 C 0.289 3.711 24 O -0.478 6.478 25 H 0.164 0.836 26 H 0.087 0.913 27 H 0.075 0.925 28 H 0.238 0.762 29 H 0.213 0.787 30 H 0.181 0.819 31 H 0.256 0.744 32 H 0.244 0.756 33 H 0.033 0.967 34 H 0.054 0.946 35 H 0.066 0.934 36 H 0.107 0.893 37 H 0.106 0.894 38 H 0.086 0.914 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.749 24.926 -5.056 25.445 hybrid contribution -0.025 -1.696 -1.135 2.040 sum -0.773 23.230 -6.190 24.053 Atomic orbital electron populations 1.22317 0.75840 1.06684 1.03055 1.45569 1.10285 1.06617 1.58584 1.23034 0.94713 0.89366 0.92168 1.21063 0.92573 0.99375 1.11379 1.21936 1.02448 0.90082 0.88723 1.18132 0.89719 0.86992 1.16482 1.41835 1.47064 1.17316 1.25709 1.16222 0.81037 0.80641 0.82288 1.90829 1.38399 1.78510 1.43324 1.44830 1.40647 1.19890 1.31053 1.20360 0.97813 0.87491 0.86749 1.19049 0.92545 0.95098 0.93088 1.20655 1.14763 1.18608 0.99963 0.91407 1.25750 0.94680 0.97661 0.99699 1.70123 1.22962 1.26479 1.35089 0.85678 0.76653 0.79078 0.81017 1.19754 1.22389 1.18565 1.22997 0.93786 0.99754 1.04405 1.22414 1.03459 0.96206 0.97555 1.17703 0.89800 0.83648 0.79964 1.90970 1.70557 1.32001 1.54256 0.83622 0.91333 0.92522 0.76235 0.78716 0.81949 0.74433 0.75625 0.96723 0.94560 0.93355 0.89255 0.89380 0.91404 0.91517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.04 10.06 127.77 1.28 2.33 16 2 N -0.50 -11.15 2.99 -673.69 -2.01 -13.16 16 3 C 0.13 1.40 10.30 83.36 0.86 2.26 16 4 C -0.22 -2.28 10.00 22.06 0.22 -2.06 16 5 C -0.01 -0.14 10.01 22.41 0.22 0.08 16 6 C -0.02 -0.49 5.78 38.18 0.22 -0.27 16 7 N -0.67 -23.21 5.19 -316.70 -1.64 -24.85 16 8 C 0.70 31.85 8.07 179.06 1.44 33.29 16 9 O -0.63 -34.85 14.85 13.42 0.20 -34.65 16 10 N -0.71 -31.73 5.42 -478.53 -2.59 -34.32 16 11 C 0.20 10.25 5.56 86.38 0.48 10.73 16 12 C 0.00 0.15 1.54 -52.93 -0.08 0.07 16 13 C -0.50 -26.60 8.10 25.60 0.21 -26.39 16 14 H 0.07 3.41 7.82 -2.91 -0.02 3.38 16 15 C 0.02 1.26 5.44 84.65 0.46 1.72 16 16 N -0.91 -54.31 12.85 21.45 0.28 -54.03 16 17 Si 0.95 44.18 29.54 68.60 2.03 46.21 16 18 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 19 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 20 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 21 C -0.17 -7.17 9.93 30.59 0.30 -6.86 16 22 C -0.16 -7.56 9.42 30.59 0.29 -7.28 16 23 C 0.49 17.49 6.93 84.98 0.59 18.08 16 24 O -0.59 -28.87 15.32 11.92 0.18 -28.69 16 25 H 0.15 0.63 7.72 -2.38 -0.02 0.61 16 26 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.22 -0.37 7.82 -2.91 -0.02 -0.40 16 29 H 0.20 0.21 8.06 -2.91 -0.02 0.18 16 30 H 0.16 2.06 8.06 -2.91 -0.02 2.03 16 31 H 0.42 11.32 8.84 -92.71 -0.82 10.50 16 32 H 0.41 16.17 7.99 -92.70 -0.74 15.43 16 33 H 0.01 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.04 1.81 8.09 -2.39 -0.02 1.79 16 35 H 0.26 14.88 8.32 -92.71 -0.77 14.11 16 36 H 0.09 3.51 8.14 -2.39 -0.02 3.49 16 37 H 0.09 3.28 8.14 -2.39 -0.02 3.26 16 38 H 0.07 3.14 8.14 -2.39 -0.02 3.12 16 39 H 0.07 3.40 8.14 -2.39 -0.02 3.38 16 Total: -1.00 -91.83 338.33 2.45 -89.37 By element: Atomic # 1 Polarization: 28.89 SS G_CDS: -0.48 Total: 28.42 kcal Atomic # 6 Polarization: 19.21 SS G_CDS: 6.50 Total: 25.71 kcal Atomic # 7 Polarization: -120.40 SS G_CDS: -5.98 Total: -126.37 kcal Atomic # 8 Polarization: -63.72 SS G_CDS: 0.38 Total: -63.34 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -91.83 2.45 -89.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000432159661.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.132 kcal (2) G-P(sol) polarization free energy of solvation -91.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds