Wall clock time and date at job start Tue Mar 31 2020 07:05:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.53004 * 109.46971 * 233.93408 * 3 2 1 5 5 C 1.53000 * 109.46988 * 180.02562 * 4 3 2 6 6 C 1.53004 * 109.46988 * 179.97438 * 5 4 3 7 7 N 1.46495 * 109.46738 * 179.97438 * 6 5 4 8 8 C 1.34777 * 119.99663 * 179.97438 * 7 6 5 9 9 O 1.21843 * 120.00114 * 0.02562 * 8 7 6 10 10 N 1.33832 * 120.00147 * 180.27726 * 8 7 6 11 11 C 1.32931 * 120.00335 * 179.72624 * 10 8 7 12 12 C 1.41206 * 126.38025 * 0.02599 * 11 10 8 13 13 C 1.34956 * 108.25105 * 179.97438 * 12 11 10 14 14 N 1.36454 * 108.94396 * 359.97438 * 13 12 11 15 15 C 1.46497 * 125.85130 * 179.97438 * 14 13 12 16 16 C 1.50700 * 109.46839 * 84.98263 * 15 14 13 17 17 H 1.07998 * 120.00121 * 359.97438 * 16 15 14 18 18 C 1.37874 * 120.00297 * 179.97438 * 16 15 14 19 19 N 1.31512 * 120.00421 * 179.97438 * 18 16 15 20 20 Si 1.86806 * 119.99740 * 0.02562 * 18 16 15 21 21 H 1.48496 * 109.47026 * 90.00018 * 20 18 16 22 22 H 1.48498 * 109.46944 * 210.00034 * 20 18 16 23 23 H 1.48497 * 109.46902 * 329.99594 * 20 18 16 24 24 N 1.37423 * 126.38130 * 179.71062 * 11 10 8 25 25 H 0.97004 * 126.36573 * 0.03671 * 24 11 10 26 26 H 1.09006 * 109.46711 * 113.93837 * 3 2 1 27 27 H 1.08997 * 109.47256 * 353.93761 * 3 2 1 28 28 H 1.08999 * 109.46770 * 60.00039 * 4 3 2 29 29 H 1.08997 * 109.46991 * 300.00574 * 4 3 2 30 30 H 1.09006 * 109.46826 * 60.00348 * 5 4 3 31 31 H 1.08997 * 109.47123 * 300.00283 * 5 4 3 32 32 H 1.09007 * 109.46621 * 60.00171 * 6 5 4 33 33 H 1.08997 * 109.46991 * 300.00423 * 6 5 4 34 34 H 0.97000 * 120.00601 * 0.02562 * 7 6 5 35 35 H 1.08006 * 125.87181 * 359.92613 * 12 11 10 36 36 H 1.07998 * 125.52710 * 180.02562 * 13 12 11 37 37 H 1.08999 * 109.47563 * 204.97521 * 15 14 13 38 38 H 1.08996 * 109.47475 * 324.98421 * 15 14 13 39 39 H 0.97005 * 120.00376 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1176 0.8501 1.1661 5 6 4.6476 0.8513 1.1657 6 6 5.1572 1.7013 2.3314 7 7 6.6222 1.7020 2.3313 8 6 7.2957 2.3903 3.2742 9 8 6.6862 3.0116 4.1269 10 7 8.6340 2.3954 3.2710 11 6 9.2984 3.0787 4.1977 12 6 8.7323 3.8412 5.2427 13 6 9.7370 4.3774 5.9669 14 7 10.9284 3.9882 5.4275 15 6 12.2564 4.3590 5.9228 16 6 12.6655 3.4114 7.0209 17 1 12.0025 2.6132 7.3202 18 6 13.8862 3.5635 7.6434 19 7 14.2431 2.7369 8.6021 20 14 15.0328 4.9446 7.1262 21 1 14.7475 6.1549 7.9380 22 1 16.4411 4.5253 7.3408 23 1 14.8212 5.2514 5.6888 24 7 10.6640 3.1698 4.3208 25 1 11.3227 2.7477 3.7472 26 1 2.9711 0.4178 -0.9393 27 1 2.9718 -1.0211 0.1085 28 1 2.7544 0.4330 2.1053 29 1 2.7537 1.8718 1.0575 30 1 5.0104 1.2688 0.2263 31 1 5.0118 -0.1703 1.2740 32 1 4.7944 1.2843 3.2709 33 1 4.7930 2.7229 2.2226 34 1 7.1074 1.2077 1.6523 35 1 7.6768 3.9733 5.4298 36 1 9.6174 5.0110 6.8332 37 1 12.9772 4.3026 5.1071 38 1 12.2278 5.3764 6.3128 39 1 15.1021 2.8437 9.0398 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000438334727.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:40 Heat of formation + Delta-G solvation = 88.465319 kcal Electronic energy + Delta-G solvation = -21159.650086 eV Core-core repulsion = 17719.082678 eV Total energy + Delta-G solvation = -3440.567409 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.84173 -38.93755 -37.50920 -35.97025 -34.34355 -33.48417 -32.88368 -31.09523 -31.03789 -29.53677 -27.08135 -24.59714 -22.77854 -21.80639 -21.47312 -21.22260 -19.66880 -17.94063 -17.42895 -17.24694 -16.35766 -16.15215 -15.74679 -15.15167 -14.88567 -14.66638 -14.53752 -14.18066 -13.76978 -13.68866 -13.43984 -13.24238 -12.91341 -12.76099 -12.64279 -12.33021 -12.27712 -11.88375 -11.70652 -11.48401 -11.37534 -11.05133 -10.99084 -10.68853 -10.06797 -9.76532 -9.66321 -9.08278 -9.05101 -8.61096 -8.40406 -6.86965 -6.52057 -4.60615 1.71889 1.99416 2.39504 2.43967 2.95851 3.00253 3.06820 3.11863 3.46685 3.72869 3.96897 4.35420 4.47285 4.50057 4.63814 4.76435 4.85448 4.99568 5.11571 5.15464 5.20772 5.43405 5.51202 5.64883 5.71726 5.85106 5.97485 5.97811 6.07047 6.17424 6.34068 6.66267 6.93194 7.03783 7.20974 7.32089 7.54110 7.73329 8.00644 8.27451 8.41877 8.51990 9.00373 9.58753 10.59469 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.060509 B = 0.001995 C = 0.001991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 462.627094 B =14034.851513 C =14063.089477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C 0.207 3.793 3 C -0.026 4.026 4 C -0.114 4.114 5 C -0.130 4.130 6 C 0.138 3.862 7 N -0.732 5.732 8 C 0.684 3.316 9 O -0.632 6.632 10 N -0.712 5.712 11 C 0.490 3.510 12 C -0.330 4.330 13 C 0.164 3.836 14 N -0.346 5.346 15 C 0.230 3.770 16 C -0.565 4.565 17 H 0.085 0.915 18 C 0.083 3.917 19 N -0.876 5.876 20 Si 0.875 3.125 21 H -0.268 1.268 22 H -0.278 1.278 23 H -0.265 1.265 24 N -0.471 5.471 25 H 0.445 0.555 26 H 0.110 0.890 27 H 0.110 0.890 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.397 0.603 35 H 0.185 0.815 36 H 0.188 0.812 37 H 0.048 0.952 38 H 0.060 0.940 39 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.980 -0.571 -13.849 17.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.119 5.119 2 C -0.111 4.111 3 C -0.066 4.066 4 C -0.153 4.153 5 C -0.168 4.168 6 C 0.013 3.987 7 N -0.387 5.387 8 C 0.383 3.617 9 O -0.514 6.514 10 N -0.476 5.476 11 C 0.236 3.764 12 C -0.363 4.363 13 C 0.020 3.980 14 N -0.132 5.132 15 C 0.112 3.888 16 C -0.603 4.603 17 H 0.103 0.897 18 C -0.123 4.123 19 N -0.512 5.512 20 Si 0.700 3.300 21 H -0.194 1.194 22 H -0.203 1.203 23 H -0.190 1.190 24 N -0.194 5.194 25 H 0.292 0.708 26 H 0.128 0.872 27 H 0.128 0.872 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.230 0.770 35 H 0.201 0.799 36 H 0.205 0.795 37 H 0.066 0.934 38 H 0.078 0.922 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -12.280 -0.614 -13.689 18.400 hybrid contribution 1.451 0.414 -0.161 1.517 sum -10.829 -0.200 -13.850 17.582 Atomic orbital electron populations 1.81252 1.13255 1.08792 1.08630 1.29313 0.95437 0.93165 0.93206 1.19355 0.81327 1.03900 1.02049 1.21455 0.95568 1.00631 0.97669 1.21771 0.94479 1.01243 0.99291 1.21033 0.80117 0.99709 0.97839 1.44664 1.05499 1.55418 1.33080 1.16622 0.85106 0.79124 0.80846 1.90735 1.72525 1.48249 1.39867 1.68043 1.08231 1.38705 1.32636 1.18690 0.81870 0.86837 0.89043 1.22426 1.01634 1.10805 1.01420 1.22808 0.83274 0.95571 0.96324 1.47414 1.08186 1.39210 1.18413 1.20302 0.75113 0.97497 0.95929 1.21275 1.04685 1.15943 1.18405 0.89650 1.24828 0.97252 0.96019 0.94192 1.69858 1.22150 1.36307 1.22860 0.86891 0.81080 0.82443 0.79575 1.19358 1.20310 1.18957 1.44364 1.06130 1.45631 1.23268 0.70829 0.87217 0.87190 0.90580 0.90624 0.90769 0.90714 0.92156 0.92196 0.76983 0.79852 0.79503 0.93406 0.92225 0.91723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -4.85 18.54 42.15 0.78 -4.07 16 2 C 0.21 1.49 15.43 -20.76 -0.32 1.17 16 3 C -0.03 -0.08 5.70 -29.52 -0.17 -0.25 16 4 C -0.11 -0.50 5.17 -26.73 -0.14 -0.64 16 5 C -0.13 -0.71 5.33 -26.73 -0.14 -0.85 16 6 C 0.14 1.44 5.67 -4.04 -0.02 1.42 16 7 N -0.73 -10.01 5.56 -65.42 -0.36 -10.37 16 8 C 0.68 12.80 8.47 -87.76 -0.74 12.06 16 9 O -0.63 -13.33 13.26 5.06 0.07 -13.27 16 10 N -0.71 -13.52 10.59 -15.79 -0.17 -13.69 16 11 C 0.49 9.23 8.07 -155.29 -1.25 7.98 16 12 C -0.33 -6.02 9.52 -39.62 -0.38 -6.40 16 13 C 0.16 2.68 11.45 -16.66 -0.19 2.49 16 14 N -0.35 -6.14 3.63 -62.25 -0.23 -6.37 16 15 C 0.23 4.35 5.26 -5.20 -0.03 4.32 16 16 C -0.57 -13.58 9.94 -34.44 -0.34 -13.93 16 17 H 0.09 2.36 8.06 -52.49 -0.42 1.94 16 18 C 0.08 2.06 5.47 -17.82 -0.10 1.97 16 19 N -0.88 -23.80 13.96 55.43 0.77 -23.03 16 20 Si 0.87 17.71 27.47 -169.99 -4.67 13.04 16 21 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 22 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 23 H -0.26 -4.98 6.54 56.52 0.37 -4.61 16 24 N -0.47 -8.08 7.38 31.33 0.23 -7.84 16 25 H 0.44 6.61 8.96 -182.54 -1.64 4.97 16 26 H 0.11 0.12 8.14 -51.93 -0.42 -0.30 16 27 H 0.11 0.13 8.14 -51.93 -0.42 -0.29 16 28 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.40 4.56 8.57 -40.82 -0.35 4.21 16 35 H 0.18 3.54 5.77 -52.48 -0.30 3.24 16 36 H 0.19 2.38 8.06 -52.49 -0.42 1.95 16 37 H 0.05 0.87 7.20 -51.93 -0.37 0.50 16 38 H 0.06 1.03 7.57 -51.93 -0.39 0.64 16 39 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 344.28 15.07 5.19 5.19 Total: -1.00 -33.63 344.28 -8.66 -42.29 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: -6.45 Total: 8.77 kcal Atomic # 6 Polarization: 13.18 SS G_CDS: -3.82 Total: 9.35 kcal Atomic # 7 Polarization: -66.41 SS G_CDS: 1.03 Total: -65.38 kcal Atomic # 8 Polarization: -13.33 SS G_CDS: 0.07 Total: -13.27 kcal Atomic # 14 Polarization: 17.71 SS G_CDS: -4.67 Total: 13.04 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.63 -8.66 -42.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000438334727.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.757 kcal (2) G-P(sol) polarization free energy of solvation -33.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.292 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds