Wall clock time and date at job start Tue Mar 31 2020 07:05:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.53004 * 109.46971 * 233.93408 * 3 2 1 5 5 C 1.53000 * 109.46988 * 180.02562 * 4 3 2 6 6 C 1.53004 * 109.46988 * 179.97438 * 5 4 3 7 7 N 1.46495 * 109.46738 * 179.97438 * 6 5 4 8 8 C 1.34777 * 119.99663 * 179.97438 * 7 6 5 9 9 O 1.21843 * 120.00114 * 0.02562 * 8 7 6 10 10 N 1.33832 * 120.00147 * 180.27726 * 8 7 6 11 11 C 1.32931 * 120.00335 * 179.72624 * 10 8 7 12 12 C 1.41206 * 126.38025 * 0.02599 * 11 10 8 13 13 C 1.34956 * 108.25105 * 179.97438 * 12 11 10 14 14 N 1.36454 * 108.94396 * 359.97438 * 13 12 11 15 15 C 1.46497 * 125.85130 * 179.97438 * 14 13 12 16 16 C 1.50700 * 109.46839 * 84.98263 * 15 14 13 17 17 H 1.07998 * 120.00121 * 359.97438 * 16 15 14 18 18 C 1.37874 * 120.00297 * 179.97438 * 16 15 14 19 19 N 1.31512 * 120.00421 * 179.97438 * 18 16 15 20 20 Si 1.86806 * 119.99740 * 0.02562 * 18 16 15 21 21 H 1.48496 * 109.47026 * 90.00018 * 20 18 16 22 22 H 1.48498 * 109.46944 * 210.00034 * 20 18 16 23 23 H 1.48497 * 109.46902 * 329.99594 * 20 18 16 24 24 N 1.37423 * 126.38130 * 179.71062 * 11 10 8 25 25 H 0.97004 * 126.36573 * 0.03671 * 24 11 10 26 26 H 1.09006 * 109.46711 * 113.93837 * 3 2 1 27 27 H 1.08997 * 109.47256 * 353.93761 * 3 2 1 28 28 H 1.08999 * 109.46770 * 60.00039 * 4 3 2 29 29 H 1.08997 * 109.46991 * 300.00574 * 4 3 2 30 30 H 1.09006 * 109.46826 * 60.00348 * 5 4 3 31 31 H 1.08997 * 109.47123 * 300.00283 * 5 4 3 32 32 H 1.09007 * 109.46621 * 60.00171 * 6 5 4 33 33 H 1.08997 * 109.46991 * 300.00423 * 6 5 4 34 34 H 0.97000 * 120.00601 * 0.02562 * 7 6 5 35 35 H 1.08006 * 125.87181 * 359.92613 * 12 11 10 36 36 H 1.07998 * 125.52710 * 180.02562 * 13 12 11 37 37 H 1.08999 * 109.47563 * 204.97521 * 15 14 13 38 38 H 1.08996 * 109.47475 * 324.98421 * 15 14 13 39 39 H 0.97005 * 120.00376 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1176 0.8501 1.1661 5 6 4.6476 0.8513 1.1657 6 6 5.1572 1.7013 2.3314 7 7 6.6222 1.7020 2.3313 8 6 7.2957 2.3903 3.2742 9 8 6.6862 3.0116 4.1269 10 7 8.6340 2.3954 3.2710 11 6 9.2984 3.0787 4.1977 12 6 8.7323 3.8412 5.2427 13 6 9.7370 4.3774 5.9669 14 7 10.9284 3.9882 5.4275 15 6 12.2564 4.3590 5.9228 16 6 12.6655 3.4114 7.0209 17 1 12.0025 2.6132 7.3202 18 6 13.8862 3.5635 7.6434 19 7 14.2431 2.7369 8.6021 20 14 15.0328 4.9446 7.1262 21 1 14.7475 6.1549 7.9380 22 1 16.4411 4.5253 7.3408 23 1 14.8212 5.2514 5.6888 24 7 10.6640 3.1698 4.3208 25 1 11.3227 2.7477 3.7472 26 1 2.9711 0.4178 -0.9393 27 1 2.9718 -1.0211 0.1085 28 1 2.7544 0.4330 2.1053 29 1 2.7537 1.8718 1.0575 30 1 5.0104 1.2688 0.2263 31 1 5.0118 -0.1703 1.2740 32 1 4.7944 1.2843 3.2709 33 1 4.7930 2.7229 2.2226 34 1 7.1074 1.2077 1.6523 35 1 7.6768 3.9733 5.4298 36 1 9.6174 5.0110 6.8332 37 1 12.9772 4.3026 5.1071 38 1 12.2278 5.3764 6.3128 39 1 15.1021 2.8437 9.0398 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000438334727.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:39 Heat of formation + Delta-G solvation = 63.775475 kcal Electronic energy + Delta-G solvation = -21160.720718 eV Core-core repulsion = 17719.082678 eV Total energy + Delta-G solvation = -3441.638041 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.23820 -40.26100 -38.10585 -36.83051 -35.81309 -34.61009 -34.36936 -32.56880 -32.47529 -30.31234 -28.62085 -25.48766 -24.28921 -22.94554 -22.62822 -22.20409 -20.97140 -19.23767 -18.84770 -18.24803 -17.48173 -17.03717 -16.89448 -16.53642 -16.23951 -15.86306 -15.49486 -15.39860 -14.79773 -14.72698 -14.61080 -14.46125 -14.16792 -13.96132 -13.81606 -13.55151 -13.16916 -12.86965 -12.58669 -12.40658 -12.24764 -12.11671 -11.91633 -11.82468 -11.38682 -11.22651 -11.19978 -10.89199 -10.48013 -9.88818 -9.80856 -8.40450 -8.28900 -6.53939 0.31778 0.62949 1.41393 1.42567 1.51235 1.70953 1.83842 1.90495 2.28083 2.43414 2.92524 3.04712 3.20651 3.23049 3.94290 3.98574 4.16285 4.29268 4.42048 4.47282 4.54876 4.56285 4.63321 4.74795 4.86864 4.89624 4.96554 5.02407 5.17973 5.20836 5.28807 5.43836 5.50187 5.81374 5.99570 6.06954 6.14410 6.47707 6.57967 6.69765 6.96019 7.09699 7.12761 8.19583 8.76151 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.060509 B = 0.001995 C = 0.001991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 462.627094 B =14034.851513 C =14063.089477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C 0.235 3.765 3 C -0.019 4.019 4 C -0.110 4.110 5 C -0.114 4.114 6 C 0.133 3.867 7 N -0.718 5.718 8 C 0.667 3.333 9 O -0.664 6.664 10 N -0.720 5.720 11 C 0.473 3.527 12 C -0.347 4.347 13 C 0.178 3.822 14 N -0.351 5.351 15 C 0.235 3.765 16 C -0.567 4.567 17 H 0.032 0.968 18 C 0.023 3.977 19 N -0.937 5.937 20 Si 0.950 3.050 21 H -0.257 1.257 22 H -0.289 1.289 23 H -0.232 1.232 24 N -0.466 5.466 25 H 0.453 0.547 26 H 0.140 0.860 27 H 0.138 0.862 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.044 0.956 33 H 0.048 0.952 34 H 0.409 0.591 35 H 0.171 0.829 36 H 0.224 0.776 37 H 0.068 0.932 38 H 0.093 0.907 39 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.909 0.635 -15.901 18.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.196 5.196 2 C -0.081 4.081 3 C -0.058 4.058 4 C -0.150 4.150 5 C -0.152 4.152 6 C 0.009 3.991 7 N -0.372 5.372 8 C 0.366 3.634 9 O -0.549 6.549 10 N -0.484 5.484 11 C 0.219 3.781 12 C -0.380 4.380 13 C 0.035 3.965 14 N -0.137 5.137 15 C 0.117 3.883 16 C -0.605 4.605 17 H 0.051 0.949 18 C -0.178 4.178 19 N -0.574 5.574 20 Si 0.772 3.228 21 H -0.181 1.181 22 H -0.215 1.215 23 H -0.154 1.154 24 N -0.191 5.191 25 H 0.302 0.698 26 H 0.157 0.843 27 H 0.156 0.844 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.112 0.888 31 H 0.109 0.891 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.244 0.756 35 H 0.188 0.812 36 H 0.241 0.759 37 H 0.085 0.915 38 H 0.111 0.889 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -11.237 0.571 -15.804 19.400 hybrid contribution 1.079 -0.044 0.522 1.199 sum -10.159 0.526 -15.282 18.358 Atomic orbital electron populations 1.81279 1.15704 1.11419 1.11169 1.30090 0.96119 0.90899 0.90966 1.19614 0.78253 1.05406 1.02577 1.21377 0.94781 1.00718 0.98111 1.21670 0.94782 1.01078 0.97645 1.21250 0.78210 1.00141 0.99537 1.44675 1.06732 1.53951 1.31849 1.17057 0.85214 0.79619 0.81557 1.90709 1.72974 1.49840 1.41394 1.68120 1.08470 1.38940 1.32911 1.18932 0.82535 0.87200 0.89474 1.22323 1.01528 1.11903 1.02238 1.23345 0.82139 0.94724 0.96323 1.47411 1.08299 1.39271 1.18720 1.20236 0.75850 0.97414 0.94803 1.21462 1.03887 1.15466 1.19699 0.94923 1.25838 0.99202 0.98849 0.93879 1.70039 1.22992 1.39272 1.25139 0.85696 0.77437 0.78639 0.81071 1.18131 1.21470 1.15444 1.44361 1.05823 1.45623 1.23246 0.69798 0.84255 0.84407 0.91374 0.91179 0.88843 0.89098 0.93761 0.93394 0.75571 0.81150 0.75922 0.91455 0.88912 0.91817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -11.39 18.54 20.01 0.37 -11.02 16 2 C 0.24 3.07 15.43 89.44 1.38 4.45 16 3 C -0.02 -0.05 5.70 28.79 0.16 0.12 16 4 C -0.11 -0.71 5.17 30.60 0.16 -0.56 16 5 C -0.11 -0.92 5.33 30.60 0.16 -0.76 16 6 C 0.13 2.68 5.67 86.38 0.49 3.17 16 7 N -0.72 -19.05 5.56 -479.06 -2.66 -21.72 16 8 C 0.67 25.08 8.47 179.35 1.52 26.60 16 9 O -0.66 -28.71 13.26 -4.81 -0.06 -28.77 16 10 N -0.72 -27.26 10.59 -322.55 -3.42 -30.68 16 11 C 0.47 17.72 8.07 133.95 1.08 18.80 16 12 C -0.35 -12.62 9.52 22.24 0.21 -12.41 16 13 C 0.18 5.54 11.45 83.22 0.95 6.49 16 14 N -0.35 -11.81 3.63 -350.85 -1.28 -13.09 16 15 C 0.24 8.22 5.26 85.63 0.45 8.67 16 16 C -0.57 -27.04 9.94 25.60 0.25 -26.79 16 17 H 0.03 1.86 8.06 -2.91 -0.02 1.84 16 18 C 0.02 1.12 5.47 84.65 0.46 1.59 16 19 N -0.94 -52.08 13.96 21.45 0.30 -51.78 16 20 Si 0.95 34.79 27.47 68.60 1.88 36.68 16 21 H -0.26 -8.92 7.11 99.48 0.71 -8.22 16 22 H -0.29 -11.04 7.11 99.48 0.71 -10.34 16 23 H -0.23 -7.20 6.54 99.48 0.65 -6.55 16 24 N -0.47 -15.50 7.38 -54.79 -0.40 -15.91 16 25 H 0.45 12.93 8.96 -213.27 -1.91 11.02 16 26 H 0.14 -0.33 8.14 -2.38 -0.02 -0.35 16 27 H 0.14 -0.28 8.14 -2.39 -0.02 -0.30 16 28 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.09 0.47 8.14 -2.38 -0.02 0.45 16 31 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.04 1.04 8.14 -2.38 -0.02 1.02 16 33 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.41 8.71 8.57 -92.71 -0.79 7.92 16 35 H 0.17 6.74 5.77 -2.91 -0.02 6.72 16 36 H 0.22 5.06 8.06 -2.91 -0.02 5.04 16 37 H 0.07 2.16 7.20 -2.39 -0.02 2.14 16 38 H 0.09 2.75 7.57 -2.39 -0.02 2.73 16 39 H 0.27 14.12 8.31 -92.70 -0.77 13.35 16 Total: -1.00 -78.14 344.28 0.35 -77.79 By element: Atomic # 1 Polarization: 30.79 SS G_CDS: -1.67 Total: 29.12 kcal Atomic # 6 Polarization: 22.08 SS G_CDS: 7.29 Total: 29.37 kcal Atomic # 7 Polarization: -137.10 SS G_CDS: -7.09 Total: -144.18 kcal Atomic # 8 Polarization: -28.71 SS G_CDS: -0.06 Total: -28.77 kcal Atomic # 14 Polarization: 34.79 SS G_CDS: 1.88 Total: 36.68 kcal Total: -78.14 0.35 -77.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000438334727.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.564 kcal (2) G-P(sol) polarization free energy of solvation -78.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds