Wall clock time and date at job start Tue Mar 31 2020 06:06:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46502 * 109.47409 * 2 1 4 4 C 1.46498 * 119.99634 * 288.08899 * 3 2 1 5 5 C 1.50705 * 109.47133 * 269.99621 * 4 3 2 6 6 H 1.07995 * 119.99964 * 0.02562 * 5 4 3 7 7 C 1.37874 * 119.99873 * 180.02562 * 5 4 3 8 8 N 1.31517 * 120.00091 * 0.02562 * 7 5 4 9 9 Si 1.86807 * 119.99851 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.46954 * 60.00078 * 9 7 5 11 11 H 1.48500 * 109.47174 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.46735 * 300.00121 * 9 7 5 13 13 C 1.34775 * 120.00178 * 108.08673 * 3 2 1 14 14 O 1.21585 * 120.00271 * 176.26444 * 13 3 2 15 15 C 1.47582 * 120.00014 * 356.26987 * 13 3 2 16 16 C 1.39765 * 120.07079 * 331.61591 * 15 13 3 17 17 C 1.37666 * 119.91909 * 180.23077 * 16 15 13 18 18 C 1.39136 * 120.07440 * 359.47492 * 17 16 15 19 19 N 1.39428 * 119.92149 * 180.29354 * 18 17 16 20 20 C 1.34774 * 120.00497 * 324.54773 * 19 18 17 21 21 N 1.34778 * 120.00355 * 185.08299 * 20 19 18 22 22 O 1.21586 * 119.99822 * 5.08410 * 20 19 18 23 23 C 1.39129 * 120.15194 * 0.27383 * 18 17 16 24 24 C 1.37664 * 120.07291 * 359.97438 * 23 18 17 25 25 H 1.09001 * 109.46931 * 59.99869 * 1 2 3 26 26 H 1.08996 * 109.47438 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46904 * 300.00555 * 1 2 3 28 28 H 1.08996 * 109.47139 * 239.99905 * 2 1 3 29 29 H 1.09001 * 109.46931 * 120.00131 * 2 1 3 30 30 H 1.09002 * 109.47329 * 30.00141 * 4 3 2 31 31 H 1.09002 * 109.46838 * 149.99889 * 4 3 2 32 32 H 0.97005 * 119.99435 * 179.97438 * 8 7 5 33 33 H 1.07995 * 120.04064 * 359.97438 * 16 15 13 34 34 H 1.07999 * 119.95849 * 179.74541 * 17 16 15 35 35 H 0.97003 * 119.99778 * 144.54110 * 19 18 17 36 36 H 0.97000 * 119.99778 * 0.02562 * 21 20 19 37 37 H 0.96998 * 120.00231 * 179.97438 * 21 20 19 38 38 H 1.07994 * 119.96909 * 179.97438 * 23 18 17 39 39 H 1.08006 * 120.03801 * 180.02562 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 1.8911 2.2031 -1.2061 5 6 3.1209 2.0347 -2.0607 6 1 3.9174 1.3806 -1.7380 7 6 3.2292 2.7157 -3.2546 8 7 2.2595 3.5127 -3.6474 9 14 4.7533 2.5064 -4.3144 10 1 4.8952 1.0797 -4.7011 11 1 4.6244 3.3396 -5.5369 12 1 5.9514 2.9331 -3.5479 13 6 2.5847 1.8958 1.1095 14 8 3.0512 3.0184 1.0893 15 6 2.6386 1.0965 2.3490 16 6 1.6616 0.1297 2.6020 17 6 1.7122 -0.6107 3.7614 18 6 2.7407 -0.4051 4.6757 19 7 2.7924 -1.1611 5.8460 20 6 1.6516 -1.5197 6.4677 21 7 1.7023 -2.1615 7.6518 22 8 0.5766 -1.2643 5.9602 23 6 3.7179 0.5528 4.4244 24 6 3.6704 1.3003 3.2694 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 1.0119 1.8891 -1.7686 31 1 1.7863 3.2503 -0.9226 32 1 2.3359 3.9921 -4.4872 33 1 0.8654 -0.0334 1.8907 34 1 0.9552 -1.3551 3.9595 35 1 3.6495 -1.4291 6.2129 36 1 2.5599 -2.3649 8.0568 37 1 0.8813 -2.4192 8.0993 38 1 4.5147 0.7103 5.1362 39 1 4.4295 2.0435 3.0747 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000439130722.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:00 Heat of formation + Delta-G solvation = -11.580583 kcal Electronic energy + Delta-G solvation = -22893.757948 eV Core-core repulsion = 19416.559473 eV Total energy + Delta-G solvation = -3477.198476 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.88195 -39.67492 -37.78096 -35.51398 -34.87573 -33.97810 -32.76615 -31.01980 -29.99128 -29.65091 -27.03156 -24.06636 -23.18280 -22.69298 -22.24161 -21.07328 -18.95093 -18.68924 -18.34646 -16.81119 -16.44974 -16.30818 -15.90727 -15.35598 -14.86778 -14.68321 -14.42717 -14.38104 -13.93890 -13.50538 -13.33401 -12.91820 -12.59214 -12.30188 -12.06325 -11.92046 -11.52323 -11.15133 -11.07534 -10.85977 -10.83729 -10.53922 -10.48153 -10.17187 -10.11131 -10.02949 -9.59460 -8.94333 -8.77029 -8.38262 -8.12369 -7.59503 -5.99308 -4.03524 1.05139 1.49561 2.43844 2.76530 3.35458 3.39453 3.41154 3.45324 3.91631 4.01711 4.20120 4.49248 4.89383 5.05283 5.07309 5.31603 5.35133 5.44664 5.50047 5.55265 5.66723 5.82491 6.01467 6.05467 6.13194 6.24203 6.33590 6.38256 6.47911 6.52183 6.59253 6.62262 7.00062 7.16378 7.46998 7.49517 7.59660 7.97222 8.17497 8.28946 8.46867 8.94866 9.13523 9.60996 11.08808 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.030916 B = 0.003469 C = 0.003298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.476083 B = 8068.863879 C = 8487.927051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.081 3.919 3 N -0.588 5.588 4 C 0.247 3.753 5 C -0.524 4.524 6 H 0.057 0.943 7 C 0.061 3.939 8 N -0.896 5.896 9 Si 0.898 3.102 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.276 1.276 13 C 0.545 3.455 14 O -0.537 6.537 15 C -0.132 4.132 16 C -0.094 4.094 17 C -0.130 4.130 18 C 0.168 3.832 19 N -0.683 5.683 20 C 0.704 3.296 21 N -0.863 5.863 22 O -0.572 6.572 23 C -0.155 4.155 24 C -0.048 4.048 25 H 0.069 0.931 26 H 0.063 0.937 27 H 0.057 0.943 28 H 0.075 0.925 29 H 0.090 0.910 30 H 0.035 0.965 31 H 0.043 0.957 32 H 0.263 0.737 33 H 0.156 0.844 34 H 0.143 0.857 35 H 0.407 0.593 36 H 0.398 0.602 37 H 0.418 0.582 38 H 0.127 0.873 39 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.357 -14.289 21.070 25.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.043 4.043 3 N -0.319 5.319 4 C 0.128 3.872 5 C -0.563 4.563 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.535 5.535 9 Si 0.726 3.274 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.332 3.668 14 O -0.416 6.416 15 C -0.136 4.136 16 C -0.113 4.113 17 C -0.150 4.150 18 C 0.073 3.927 19 N -0.331 5.331 20 C 0.402 3.598 21 N -0.432 5.432 22 O -0.448 6.448 23 C -0.176 4.176 24 C -0.068 4.068 25 H 0.088 0.912 26 H 0.082 0.918 27 H 0.076 0.924 28 H 0.093 0.907 29 H 0.108 0.892 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.173 0.827 34 H 0.160 0.840 35 H 0.242 0.758 36 H 0.226 0.774 37 H 0.251 0.749 38 H 0.145 0.855 39 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -0.321 -13.295 20.361 24.319 hybrid contribution 1.365 -0.485 -0.011 1.448 sum 1.043 -13.780 20.350 24.599 Atomic orbital electron populations 1.22269 0.96518 1.01807 1.02842 1.22095 0.93953 0.84677 1.03526 1.48137 1.57469 1.12924 1.13355 1.19282 0.97027 0.91112 0.79819 1.21399 1.03746 1.27039 1.04126 0.92486 1.24930 0.96557 0.94980 0.97652 1.69928 1.32347 1.28675 1.22560 0.86561 0.83399 0.77963 0.79505 1.20287 1.21221 1.20181 1.18137 0.79199 0.86462 0.83014 1.90755 1.46606 1.19680 1.84548 1.20300 0.97510 0.98894 0.96904 1.22172 0.98954 0.93549 0.96604 1.21227 0.99342 1.02142 0.92306 1.17608 0.97248 0.92400 0.85486 1.42409 1.08402 1.56179 1.26113 1.15960 0.84192 0.78532 0.81066 1.42970 1.12825 1.64814 1.22563 1.91010 1.27819 1.59677 1.66285 1.20745 1.00846 0.96723 0.99278 1.21020 0.97039 0.97074 0.91625 0.91188 0.91833 0.92368 0.90678 0.89185 0.94736 0.93879 0.92710 0.82654 0.83967 0.75807 0.77425 0.74950 0.85489 0.84570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.58 9.13 37.16 0.34 -2.24 16 2 C 0.08 1.39 5.62 -4.04 -0.02 1.37 16 3 N -0.59 -13.05 2.51 -176.27 -0.44 -13.49 16 4 C 0.25 6.60 5.06 -5.19 -0.03 6.57 16 5 C -0.52 -15.19 9.39 -34.44 -0.32 -15.51 16 6 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.90 -27.01 13.29 55.43 0.74 -26.28 16 9 Si 0.90 22.20 29.54 -169.99 -5.02 17.18 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 12 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 13 C 0.54 12.22 7.44 -12.45 -0.09 12.13 16 14 O -0.54 -14.27 16.29 5.29 0.09 -14.18 16 15 C -0.13 -2.33 5.49 -104.95 -0.58 -2.90 16 16 C -0.09 -1.43 7.39 -39.22 -0.29 -1.72 16 17 C -0.13 -1.79 8.67 -39.46 -0.34 -2.14 16 18 C 0.17 2.02 6.29 -83.74 -0.53 1.49 16 19 N -0.68 -5.77 5.32 -14.22 -0.08 -5.84 16 20 C 0.70 6.81 8.68 -86.92 -0.75 6.06 16 21 N -0.86 -4.01 8.88 27.63 0.25 -3.76 16 22 O -0.57 -8.23 14.60 5.29 0.08 -8.15 16 23 C -0.16 -1.85 9.94 -39.46 -0.39 -2.24 16 24 C -0.05 -0.74 9.58 -39.23 -0.38 -1.11 16 25 H 0.07 1.13 7.23 -51.93 -0.38 0.76 16 26 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.06 0.83 6.82 -51.93 -0.35 0.48 16 28 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 29 H 0.09 1.36 4.14 -51.93 -0.21 1.14 16 30 H 0.03 0.92 7.12 -51.93 -0.37 0.55 16 31 H 0.04 1.30 7.48 -51.93 -0.39 0.91 16 32 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 33 H 0.16 2.23 2.91 -52.49 -0.15 2.08 16 34 H 0.14 1.98 6.21 -52.49 -0.33 1.65 16 35 H 0.41 1.85 8.84 -40.82 -0.36 1.49 16 36 H 0.40 0.49 8.85 -40.82 -0.36 0.13 16 37 H 0.42 1.59 8.93 -40.82 -0.36 1.23 16 38 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 39 H 0.14 2.10 7.90 -52.48 -0.41 1.69 16 LS Contribution 326.76 15.07 4.92 4.92 Total: -1.00 -37.59 326.76 -7.44 -45.04 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -4.50 Total: 3.16 kcal Atomic # 6 Polarization: 4.89 SS G_CDS: -3.48 Total: 1.41 kcal Atomic # 7 Polarization: -49.84 SS G_CDS: 0.46 Total: -49.38 kcal Atomic # 8 Polarization: -22.50 SS G_CDS: 0.16 Total: -22.34 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -37.59 -7.44 -45.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439130722.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.459 kcal (2) G-P(sol) polarization free energy of solvation -37.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds