Wall clock time and date at job start Tue Mar 31 2020 06:05:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46502 * 109.47409 * 2 1 4 4 C 1.46498 * 119.99634 * 288.08899 * 3 2 1 5 5 C 1.50705 * 109.47133 * 269.99621 * 4 3 2 6 6 H 1.07995 * 119.99964 * 0.02562 * 5 4 3 7 7 C 1.37874 * 119.99873 * 180.02562 * 5 4 3 8 8 N 1.31517 * 120.00091 * 0.02562 * 7 5 4 9 9 Si 1.86807 * 119.99851 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.46954 * 60.00078 * 9 7 5 11 11 H 1.48500 * 109.47174 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.46735 * 300.00121 * 9 7 5 13 13 C 1.34775 * 120.00178 * 108.08673 * 3 2 1 14 14 O 1.21585 * 120.00271 * 176.26444 * 13 3 2 15 15 C 1.47582 * 120.00014 * 356.26987 * 13 3 2 16 16 C 1.39765 * 120.07079 * 331.61591 * 15 13 3 17 17 C 1.37666 * 119.91909 * 180.23077 * 16 15 13 18 18 C 1.39136 * 120.07440 * 359.47492 * 17 16 15 19 19 N 1.39428 * 119.92149 * 180.29354 * 18 17 16 20 20 C 1.34774 * 120.00497 * 324.54773 * 19 18 17 21 21 N 1.34778 * 120.00355 * 185.08299 * 20 19 18 22 22 O 1.21586 * 119.99822 * 5.08410 * 20 19 18 23 23 C 1.39129 * 120.15194 * 0.27383 * 18 17 16 24 24 C 1.37664 * 120.07291 * 359.97438 * 23 18 17 25 25 H 1.09001 * 109.46931 * 59.99869 * 1 2 3 26 26 H 1.08996 * 109.47438 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46904 * 300.00555 * 1 2 3 28 28 H 1.08996 * 109.47139 * 239.99905 * 2 1 3 29 29 H 1.09001 * 109.46931 * 120.00131 * 2 1 3 30 30 H 1.09002 * 109.47329 * 30.00141 * 4 3 2 31 31 H 1.09002 * 109.46838 * 149.99889 * 4 3 2 32 32 H 0.97005 * 119.99435 * 179.97438 * 8 7 5 33 33 H 1.07995 * 120.04064 * 359.97438 * 16 15 13 34 34 H 1.07999 * 119.95849 * 179.74541 * 17 16 15 35 35 H 0.97003 * 119.99778 * 144.54110 * 19 18 17 36 36 H 0.97000 * 119.99778 * 0.02562 * 21 20 19 37 37 H 0.96998 * 120.00231 * 179.97438 * 21 20 19 38 38 H 1.07994 * 119.96909 * 179.97438 * 23 18 17 39 39 H 1.08006 * 120.03801 * 180.02562 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 1.8911 2.2031 -1.2061 5 6 3.1209 2.0347 -2.0607 6 1 3.9174 1.3806 -1.7380 7 6 3.2292 2.7157 -3.2546 8 7 2.2595 3.5127 -3.6474 9 14 4.7533 2.5064 -4.3144 10 1 4.8952 1.0797 -4.7011 11 1 4.6244 3.3396 -5.5369 12 1 5.9514 2.9331 -3.5479 13 6 2.5847 1.8958 1.1095 14 8 3.0512 3.0184 1.0893 15 6 2.6386 1.0965 2.3490 16 6 1.6616 0.1297 2.6020 17 6 1.7122 -0.6107 3.7614 18 6 2.7407 -0.4051 4.6757 19 7 2.7924 -1.1611 5.8460 20 6 1.6516 -1.5197 6.4677 21 7 1.7023 -2.1615 7.6518 22 8 0.5766 -1.2643 5.9602 23 6 3.7179 0.5528 4.4244 24 6 3.6704 1.3003 3.2694 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 1.0119 1.8891 -1.7686 31 1 1.7863 3.2503 -0.9226 32 1 2.3359 3.9921 -4.4872 33 1 0.8654 -0.0334 1.8907 34 1 0.9552 -1.3551 3.9595 35 1 3.6495 -1.4291 6.2129 36 1 2.5599 -2.3649 8.0568 37 1 0.8813 -2.4192 8.0993 38 1 4.5147 0.7103 5.1362 39 1 4.4295 2.0435 3.0747 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000439130722.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:59 Heat of formation + Delta-G solvation = -41.072170 kcal Electronic energy + Delta-G solvation = -22895.036800 eV Core-core repulsion = 19416.559473 eV Total energy + Delta-G solvation = -3478.477327 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.85635 -41.02147 -39.04592 -37.23197 -35.88553 -34.96079 -34.54242 -32.37904 -31.39683 -30.88086 -28.93291 -25.64708 -24.64903 -23.94573 -23.57001 -22.02837 -20.49727 -19.48259 -19.11111 -18.67273 -18.19548 -17.45418 -17.06155 -16.61069 -16.20613 -16.08639 -15.83801 -15.53561 -15.32343 -14.96534 -14.63618 -14.40023 -14.01451 -13.66211 -13.48044 -13.42028 -13.25990 -13.06403 -12.65476 -12.51704 -12.26915 -12.10693 -12.03026 -11.72515 -11.53944 -11.14369 -10.74884 -10.64402 -10.62816 -9.89849 -9.52811 -9.11748 -8.22051 -6.37020 -0.13379 0.39599 1.36194 1.41123 1.48526 1.71907 1.81675 2.12630 2.28819 2.43707 2.86108 3.07010 3.50770 3.63895 3.86935 3.97128 4.10102 4.32091 4.33943 4.43252 4.53123 4.57523 4.84218 4.93491 4.99038 5.05572 5.11297 5.19088 5.23097 5.34683 5.41285 5.46699 5.57198 5.82214 5.84194 5.95915 5.98670 6.06176 6.68056 6.74751 6.95607 7.25823 7.42300 7.53764 8.85085 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.030916 B = 0.003469 C = 0.003298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.476083 B = 8068.863879 C = 8487.927051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.076 3.924 3 N -0.594 5.594 4 C 0.262 3.738 5 C -0.544 4.544 6 H 0.051 0.949 7 C 0.007 3.993 8 N -0.929 5.929 9 Si 0.970 3.030 10 H -0.260 1.260 11 H -0.277 1.277 12 H -0.277 1.277 13 C 0.537 3.463 14 O -0.596 6.596 15 C -0.161 4.161 16 C -0.091 4.091 17 C -0.134 4.134 18 C 0.184 3.816 19 N -0.667 5.667 20 C 0.699 3.301 21 N -0.837 5.837 22 O -0.621 6.621 23 C -0.138 4.138 24 C -0.056 4.056 25 H 0.048 0.952 26 H 0.103 0.897 27 H 0.061 0.939 28 H 0.069 0.931 29 H 0.117 0.883 30 H 0.029 0.971 31 H -0.004 1.004 32 H 0.268 0.732 33 H 0.160 0.840 34 H 0.145 0.855 35 H 0.429 0.571 36 H 0.418 0.582 37 H 0.425 0.575 38 H 0.169 0.831 39 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.560 -17.094 23.380 29.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.045 4.045 3 N -0.323 5.323 4 C 0.141 3.859 5 C -0.583 4.583 6 H 0.070 0.930 7 C -0.192 4.192 8 N -0.568 5.568 9 Si 0.793 3.207 10 H -0.184 1.184 11 H -0.201 1.201 12 H -0.203 1.203 13 C 0.327 3.673 14 O -0.479 6.479 15 C -0.165 4.165 16 C -0.109 4.109 17 C -0.155 4.155 18 C 0.087 3.913 19 N -0.317 5.317 20 C 0.397 3.603 21 N -0.406 5.406 22 O -0.501 6.501 23 C -0.158 4.158 24 C -0.076 4.076 25 H 0.067 0.933 26 H 0.122 0.878 27 H 0.080 0.920 28 H 0.088 0.912 29 H 0.135 0.865 30 H 0.047 0.953 31 H 0.014 0.986 32 H 0.077 0.923 33 H 0.177 0.823 34 H 0.163 0.837 35 H 0.269 0.731 36 H 0.250 0.750 37 H 0.259 0.741 38 H 0.187 0.813 39 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 0.905 -16.192 22.750 27.939 hybrid contribution 0.963 0.314 -0.538 1.147 sum 1.869 -15.879 22.212 27.368 Atomic orbital electron populations 1.22216 0.94421 1.04106 1.01928 1.22424 0.95678 0.81898 1.04541 1.48151 1.57668 1.14456 1.12052 1.18747 0.96309 0.89475 0.81342 1.21657 1.04269 1.27414 1.04946 0.93031 1.25881 0.99955 0.94331 0.98989 1.70052 1.34361 1.29264 1.23146 0.85442 0.78741 0.78902 0.77568 1.18429 1.20145 1.20268 1.18965 0.77750 0.86231 0.84371 1.90696 1.49190 1.22259 1.85738 1.19939 1.00335 1.00573 0.95656 1.22094 0.98293 0.93036 0.97486 1.21300 1.00072 1.01983 0.92096 1.17688 0.95958 0.91726 0.85891 1.42227 1.09486 1.55229 1.24797 1.16188 0.83515 0.78608 0.81982 1.42747 1.14450 1.62735 1.20685 1.90991 1.29646 1.61686 1.67794 1.20987 1.01494 0.95050 0.98275 1.21087 0.96353 0.97642 0.92479 0.93332 0.87839 0.92037 0.91237 0.86544 0.95339 0.98589 0.92339 0.82325 0.83697 0.73107 0.75038 0.74093 0.81335 0.85489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.91 9.13 71.98 0.66 -4.25 16 2 C 0.08 2.64 5.62 86.38 0.49 3.13 16 3 N -0.59 -27.76 2.51 -829.86 -2.09 -29.84 16 4 C 0.26 14.98 5.06 85.63 0.43 15.41 16 5 C -0.54 -32.86 9.39 25.60 0.24 -32.62 16 6 H 0.05 3.09 7.81 -2.91 -0.02 3.07 16 7 C 0.01 0.44 5.46 84.65 0.46 0.90 16 8 N -0.93 -57.78 13.29 21.45 0.28 -57.49 16 9 Si 0.97 46.17 29.54 68.60 2.03 48.19 16 10 H -0.26 -11.58 7.11 99.48 0.71 -10.88 16 11 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 12 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 13 C 0.54 25.45 7.44 86.71 0.65 26.10 16 14 O -0.60 -33.99 16.29 -3.98 -0.06 -34.06 16 15 C -0.16 -5.77 5.49 -20.08 -0.11 -5.88 16 16 C -0.09 -2.68 7.39 22.50 0.17 -2.51 16 17 C -0.13 -3.43 8.67 22.35 0.19 -3.23 16 18 C 0.18 3.84 6.29 38.36 0.24 4.08 16 19 N -0.67 -8.52 5.32 -317.18 -1.69 -10.21 16 20 C 0.70 11.14 8.68 179.05 1.55 12.70 16 21 N -0.84 -4.52 8.88 -184.75 -1.64 -6.16 16 22 O -0.62 -16.50 14.60 -3.99 -0.06 -16.56 16 23 C -0.14 -2.85 9.94 22.35 0.22 -2.63 16 24 C -0.06 -1.68 9.58 22.50 0.22 -1.47 16 25 H 0.05 1.61 7.23 -2.39 -0.02 1.60 16 26 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 27 H 0.06 1.75 6.82 -2.39 -0.02 1.73 16 28 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 29 H 0.12 3.45 4.14 -2.39 -0.01 3.44 16 30 H 0.03 1.63 7.12 -2.39 -0.02 1.62 16 31 H 0.00 -0.26 7.48 -2.39 -0.02 -0.28 16 32 H 0.27 15.58 8.31 -92.70 -0.77 14.81 16 33 H 0.16 4.45 2.91 -2.91 -0.01 4.45 16 34 H 0.15 3.73 6.21 -2.91 -0.02 3.71 16 35 H 0.43 1.69 8.84 -92.71 -0.82 0.87 16 36 H 0.42 -0.90 8.85 -92.71 -0.82 -1.72 16 37 H 0.43 1.76 8.93 -92.71 -0.83 0.93 16 38 H 0.17 2.08 8.06 -2.91 -0.02 2.06 16 39 H 0.13 4.00 7.90 -2.91 -0.02 3.98 16 Total: -1.00 -87.64 326.76 0.85 -86.79 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -1.33 Total: 9.61 kcal Atomic # 6 Polarization: 4.32 SS G_CDS: 5.41 Total: 9.73 kcal Atomic # 7 Polarization: -98.57 SS G_CDS: -5.13 Total: -103.70 kcal Atomic # 8 Polarization: -50.50 SS G_CDS: -0.12 Total: -50.62 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 2.03 Total: 48.19 kcal Total: -87.64 0.85 -86.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439130722.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.714 kcal (2) G-P(sol) polarization free energy of solvation -87.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds