Wall clock time and date at job start Tue Mar 31 2020 06:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46494 * 109.47219 * 2 1 4 4 C 1.46506 * 120.00103 * 76.10112 * 3 2 1 5 5 C 1.50700 * 109.46741 * 90.00191 * 4 3 2 6 6 H 1.07996 * 120.00371 * 359.97438 * 5 4 3 7 7 C 1.37878 * 119.99485 * 180.02562 * 5 4 3 8 8 N 1.31513 * 120.00216 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99705 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47279 * 59.99905 * 9 7 5 11 11 H 1.48504 * 109.47065 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47171 * 299.99343 * 9 7 5 13 13 C 1.34783 * 120.00311 * 256.10075 * 3 2 1 14 14 O 1.21548 * 120.00133 * 182.65990 * 13 3 2 15 15 C 1.47856 * 119.99552 * 2.66707 * 13 3 2 16 16 C 1.39613 * 120.11750 * 23.21993 * 15 13 3 17 17 C 1.37981 * 119.99897 * 179.69807 * 16 15 13 18 18 C 1.38255 * 120.21949 * 0.60725 * 17 16 15 19 19 C 1.38943 * 120.22144 * 359.66956 * 18 17 16 20 20 N 1.39984 * 119.99742 * 180.02562 * 19 18 17 21 21 C 1.34771 * 120.00092 * 207.00972 * 20 19 18 22 22 N 1.34772 * 120.00217 * 185.27448 * 21 20 19 23 23 O 1.21589 * 120.00275 * 5.26914 * 21 20 19 24 24 C 1.38631 * 120.00543 * 0.02587 * 19 18 17 25 25 H 1.09000 * 109.46799 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46974 * 300.00216 * 1 2 3 27 27 H 1.09001 * 109.46799 * 59.99868 * 1 2 3 28 28 H 1.09006 * 109.47140 * 240.00100 * 2 1 3 29 29 H 1.08996 * 109.47212 * 120.00270 * 2 1 3 30 30 H 1.08994 * 109.47025 * 330.00301 * 4 3 2 31 31 H 1.08998 * 109.47338 * 210.00007 * 4 3 2 32 32 H 0.96998 * 120.00237 * 180.02562 * 8 7 5 33 33 H 1.08001 * 119.99823 * 0.02562 * 16 15 13 34 34 H 1.07998 * 119.88963 * 180.29790 * 17 16 15 35 35 H 1.07992 * 119.89034 * 179.69495 * 18 17 16 36 36 H 0.96999 * 119.99963 * 26.99916 * 20 19 18 37 37 H 0.97001 * 119.99670 * 359.97438 * 22 21 20 38 38 H 0.97003 * 120.00287 * 179.97438 * 22 21 20 39 39 H 1.08005 * 120.10828 * 180.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 1.9752 2.1734 1.2316 5 6 3.2608 1.9853 1.9951 6 1 4.0326 1.3398 1.6025 7 6 3.4513 2.6364 3.1955 8 7 2.5112 3.4220 3.6738 9 14 5.0451 2.4038 4.1415 10 1 6.1872 2.8521 3.3050 11 1 5.0013 3.2067 5.3900 12 1 5.2139 0.9681 4.4815 13 6 2.5074 1.9231 -1.1330 14 8 2.9571 3.0523 -1.1218 15 6 2.4967 1.1440 -2.3896 16 6 1.5906 0.0949 -2.5557 17 6 1.5785 -0.6265 -3.7319 18 6 2.4700 -0.3225 -4.7439 19 6 3.3795 0.7160 -4.5861 20 7 4.2797 1.0201 -5.6141 21 6 5.4640 1.5946 -5.3246 22 7 6.2850 1.9844 -6.3198 23 8 5.7918 1.7613 -4.1657 24 6 3.3956 1.4509 -3.4108 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.1367 1.8451 1.8456 31 1 1.8520 3.2272 0.9817 32 1 2.6454 3.8803 4.5181 33 1 0.8956 -0.1485 -1.7657 34 1 0.8736 -1.4346 -3.8603 35 1 2.4592 -0.8938 -5.6603 36 1 4.0512 0.8172 -6.5347 37 1 6.0237 1.8512 -7.2444 38 1 7.1373 2.3983 -6.1115 39 1 4.1016 2.2588 -3.2865 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000440595255.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:02 Heat of formation + Delta-G solvation = 0.244911 kcal Electronic energy + Delta-G solvation = -23178.360183 eV Core-core repulsion = 19701.674499 eV Total energy + Delta-G solvation = -3476.685684 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.79698 -39.62035 -37.74187 -35.59991 -34.73610 -33.84960 -32.73621 -30.91576 -30.41785 -29.10545 -27.10670 -24.00888 -23.35758 -22.86278 -21.89309 -21.04988 -19.23238 -18.46665 -17.81262 -16.68417 -16.54476 -16.27462 -15.58902 -15.31343 -15.19365 -14.66291 -14.42384 -14.14293 -13.66553 -13.56767 -13.36723 -13.05768 -12.75337 -12.16188 -11.98859 -11.73738 -11.42257 -11.23952 -11.08949 -10.84669 -10.80785 -10.49576 -10.21747 -10.17076 -10.00585 -9.88270 -9.55929 -8.90644 -8.71736 -8.34414 -8.00803 -7.57760 -5.95750 -3.99536 1.11758 1.46358 2.55052 2.93120 3.39527 3.43151 3.45860 3.50579 3.93413 4.15495 4.27532 4.53649 4.88357 4.94800 5.15778 5.24584 5.38724 5.49650 5.51410 5.58166 5.63872 5.80939 5.91796 6.05917 6.15327 6.31936 6.35732 6.43334 6.54374 6.59191 6.62532 6.70445 7.05842 7.19001 7.52236 7.61690 7.63359 8.01267 8.32761 8.34659 8.49465 8.99243 9.17776 9.65072 11.12382 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.016015 B = 0.004682 C = 0.003845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.947163 B = 5978.949544 C = 7279.867004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.073 3.927 3 N -0.587 5.587 4 C 0.247 3.753 5 C -0.524 4.524 6 H 0.057 0.943 7 C 0.061 3.939 8 N -0.897 5.897 9 Si 0.897 3.103 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.277 1.277 13 C 0.544 3.456 14 O -0.532 6.532 15 C -0.097 4.097 16 C -0.144 4.144 17 C -0.110 4.110 18 C -0.139 4.139 19 C 0.150 3.850 20 N -0.682 5.682 21 C 0.699 3.301 22 N -0.863 5.863 23 O -0.561 6.561 24 C -0.075 4.075 25 H 0.063 0.937 26 H 0.069 0.931 27 H 0.059 0.941 28 H 0.098 0.902 29 H 0.077 0.923 30 H 0.034 0.966 31 H 0.043 0.957 32 H 0.263 0.737 33 H 0.166 0.834 34 H 0.129 0.871 35 H 0.123 0.877 36 H 0.406 0.594 37 H 0.396 0.604 38 H 0.419 0.581 39 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.645 -10.228 -22.207 24.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.050 4.050 3 N -0.318 5.318 4 C 0.128 3.872 5 C -0.563 4.563 6 H 0.076 0.924 7 C -0.140 4.140 8 N -0.536 5.536 9 Si 0.725 3.275 10 H -0.201 1.201 11 H -0.212 1.212 12 H -0.203 1.203 13 C 0.331 3.669 14 O -0.410 6.410 15 C -0.101 4.101 16 C -0.162 4.162 17 C -0.129 4.129 18 C -0.160 4.160 19 C 0.056 3.944 20 N -0.330 5.330 21 C 0.398 3.602 22 N -0.432 5.432 23 O -0.436 6.436 24 C -0.096 4.096 25 H 0.082 0.918 26 H 0.088 0.912 27 H 0.077 0.923 28 H 0.115 0.885 29 H 0.095 0.905 30 H 0.052 0.948 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.183 0.817 34 H 0.147 0.853 35 H 0.141 0.859 36 H 0.240 0.760 37 H 0.224 0.776 38 H 0.251 0.749 39 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -1.258 -9.373 -20.987 23.019 hybrid contribution 1.064 -0.174 -0.322 1.126 sum -0.193 -9.547 -21.309 23.351 Atomic orbital electron populations 1.22289 0.96602 1.01777 1.02894 1.22294 0.93762 0.84947 1.04036 1.48110 1.59771 1.13025 1.10918 1.19282 0.97141 0.91736 0.79028 1.21421 1.02015 1.28109 1.04742 0.92448 1.24914 0.96827 0.94943 0.97358 1.69923 1.33299 1.29860 1.20526 0.86566 0.83944 0.78028 0.78956 1.20139 1.21219 1.20266 1.18155 0.79111 0.86504 0.83152 1.90753 1.45587 1.19143 1.85488 1.20177 0.97235 0.97111 0.95560 1.22637 1.00068 0.94950 0.98580 1.20856 0.98901 1.00322 0.92822 1.20846 0.98071 0.96586 1.00510 1.17366 0.91981 0.95685 0.89400 1.42493 1.16456 1.64494 1.09586 1.16018 0.80219 0.78584 0.85417 1.42967 1.23547 1.68462 1.08211 1.91086 1.74659 1.59881 1.17946 1.21462 0.97922 0.99031 0.91147 0.91799 0.91217 0.92251 0.88498 0.90504 0.94761 0.93852 0.92754 0.81695 0.85311 0.85867 0.75950 0.77594 0.74871 0.82816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.46 9.04 37.16 0.34 -2.13 16 2 C 0.07 1.25 5.58 -4.04 -0.02 1.23 16 3 N -0.59 -13.38 2.49 -176.17 -0.44 -13.82 16 4 C 0.25 6.75 5.10 -5.19 -0.03 6.72 16 5 C -0.52 -15.63 9.39 -34.44 -0.32 -15.95 16 6 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 7 C 0.06 1.82 5.46 -17.82 -0.10 1.72 16 8 N -0.90 -27.45 13.29 55.43 0.74 -26.71 16 9 Si 0.90 22.87 29.54 -169.99 -5.02 17.85 16 10 H -0.28 -7.14 7.11 56.52 0.40 -6.73 16 11 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 12 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 13 C 0.54 12.85 7.52 -12.32 -0.09 12.76 16 14 O -0.53 -14.96 16.18 5.32 0.09 -14.88 16 15 C -0.10 -1.81 5.61 -104.99 -0.59 -2.40 16 16 C -0.14 -2.06 7.50 -39.16 -0.29 -2.35 16 17 C -0.11 -1.23 10.02 -39.67 -0.40 -1.62 16 18 C -0.14 -1.49 9.94 -39.31 -0.39 -1.88 16 19 C 0.15 2.04 6.39 -83.73 -0.54 1.51 16 20 N -0.68 -7.02 5.37 -14.25 -0.08 -7.10 16 21 C 0.70 8.74 8.62 -86.93 -0.75 7.99 16 22 N -0.86 -6.06 8.88 27.63 0.25 -5.82 16 23 O -0.56 -10.41 14.45 5.29 0.08 -10.33 16 24 C -0.07 -1.36 8.23 -38.98 -0.32 -1.68 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.07 1.09 7.50 -51.93 -0.39 0.70 16 27 H 0.06 0.78 7.01 -51.93 -0.36 0.42 16 28 H 0.10 1.47 4.05 -52.37 -0.21 1.25 16 29 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 30 H 0.03 0.93 7.40 -51.93 -0.38 0.54 16 31 H 0.04 1.33 7.46 -51.93 -0.39 0.94 16 32 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 33 H 0.17 2.16 2.27 -52.49 -0.12 2.04 16 34 H 0.13 1.00 8.06 -52.49 -0.42 0.57 16 35 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 36 H 0.41 2.29 8.81 -40.82 -0.36 1.93 16 37 H 0.40 1.21 8.85 -40.82 -0.36 0.85 16 38 H 0.42 2.70 8.93 -40.82 -0.36 2.33 16 39 H 0.15 3.31 5.70 -52.48 -0.30 3.01 16 LS Contribution 326.42 15.07 4.92 4.92 Total: -1.00 -39.56 326.42 -7.45 -47.01 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -4.48 Total: 4.95 kcal Atomic # 6 Polarization: 7.42 SS G_CDS: -3.50 Total: 3.92 kcal Atomic # 7 Polarization: -53.91 SS G_CDS: 0.47 Total: -53.44 kcal Atomic # 8 Polarization: -25.37 SS G_CDS: 0.16 Total: -25.21 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -5.02 Total: 17.85 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -39.56 -7.45 -47.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000440595255.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.258 kcal (2) G-P(sol) polarization free energy of solvation -39.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds