Wall clock time and date at job start Tue Mar 31 2020 06:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46494 * 109.47219 * 2 1 4 4 C 1.46506 * 120.00103 * 76.10112 * 3 2 1 5 5 C 1.50700 * 109.46741 * 90.00191 * 4 3 2 6 6 H 1.07996 * 120.00371 * 359.97438 * 5 4 3 7 7 C 1.37878 * 119.99485 * 180.02562 * 5 4 3 8 8 N 1.31513 * 120.00216 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99705 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47279 * 59.99905 * 9 7 5 11 11 H 1.48504 * 109.47065 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47171 * 299.99343 * 9 7 5 13 13 C 1.34783 * 120.00311 * 256.10075 * 3 2 1 14 14 O 1.21548 * 120.00133 * 182.65990 * 13 3 2 15 15 C 1.47856 * 119.99552 * 2.66707 * 13 3 2 16 16 C 1.39613 * 120.11750 * 23.21993 * 15 13 3 17 17 C 1.37981 * 119.99897 * 179.69807 * 16 15 13 18 18 C 1.38255 * 120.21949 * 0.60725 * 17 16 15 19 19 C 1.38943 * 120.22144 * 359.66956 * 18 17 16 20 20 N 1.39984 * 119.99742 * 180.02562 * 19 18 17 21 21 C 1.34771 * 120.00092 * 207.00972 * 20 19 18 22 22 N 1.34772 * 120.00217 * 185.27448 * 21 20 19 23 23 O 1.21589 * 120.00275 * 5.26914 * 21 20 19 24 24 C 1.38631 * 120.00543 * 0.02587 * 19 18 17 25 25 H 1.09000 * 109.46799 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46974 * 300.00216 * 1 2 3 27 27 H 1.09001 * 109.46799 * 59.99868 * 1 2 3 28 28 H 1.09006 * 109.47140 * 240.00100 * 2 1 3 29 29 H 1.08996 * 109.47212 * 120.00270 * 2 1 3 30 30 H 1.08994 * 109.47025 * 330.00301 * 4 3 2 31 31 H 1.08998 * 109.47338 * 210.00007 * 4 3 2 32 32 H 0.96998 * 120.00237 * 180.02562 * 8 7 5 33 33 H 1.08001 * 119.99823 * 0.02562 * 16 15 13 34 34 H 1.07998 * 119.88963 * 180.29790 * 17 16 15 35 35 H 1.07992 * 119.89034 * 179.69495 * 18 17 16 36 36 H 0.96999 * 119.99963 * 26.99916 * 20 19 18 37 37 H 0.97001 * 119.99670 * 359.97438 * 22 21 20 38 38 H 0.97003 * 120.00287 * 179.97438 * 22 21 20 39 39 H 1.08005 * 120.10828 * 180.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 1.9752 2.1734 1.2316 5 6 3.2608 1.9853 1.9951 6 1 4.0326 1.3398 1.6025 7 6 3.4513 2.6364 3.1955 8 7 2.5112 3.4220 3.6738 9 14 5.0451 2.4038 4.1415 10 1 6.1872 2.8521 3.3050 11 1 5.0013 3.2067 5.3900 12 1 5.2139 0.9681 4.4815 13 6 2.5074 1.9231 -1.1330 14 8 2.9571 3.0523 -1.1218 15 6 2.4967 1.1440 -2.3896 16 6 1.5906 0.0949 -2.5557 17 6 1.5785 -0.6265 -3.7319 18 6 2.4700 -0.3225 -4.7439 19 6 3.3795 0.7160 -4.5861 20 7 4.2797 1.0201 -5.6141 21 6 5.4640 1.5946 -5.3246 22 7 6.2850 1.9844 -6.3198 23 8 5.7918 1.7613 -4.1657 24 6 3.3956 1.4509 -3.4108 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.1367 1.8451 1.8456 31 1 1.8520 3.2272 0.9817 32 1 2.6454 3.8803 4.5181 33 1 0.8956 -0.1485 -1.7657 34 1 0.8736 -1.4346 -3.8603 35 1 2.4592 -0.8938 -5.6603 36 1 4.0512 0.8172 -6.5347 37 1 6.0237 1.8512 -7.2444 38 1 7.1373 2.3983 -6.1115 39 1 4.1016 2.2588 -3.2865 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000440595255.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:02 Heat of formation + Delta-G solvation = -32.709028 kcal Electronic energy + Delta-G solvation = -23179.789173 eV Core-core repulsion = 19701.674499 eV Total energy + Delta-G solvation = -3478.114674 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.91292 -41.03434 -39.06914 -37.32421 -35.92754 -35.03897 -34.56557 -32.21314 -31.94908 -30.21721 -29.11684 -25.76199 -24.64016 -24.20315 -23.38390 -22.04419 -20.70023 -19.35796 -19.07350 -18.62811 -17.89780 -17.65501 -17.09503 -16.59754 -16.40346 -16.29069 -15.84925 -15.64635 -15.09016 -14.81609 -14.73615 -14.42091 -14.25492 -13.75494 -13.54387 -13.31329 -13.12858 -12.78062 -12.63860 -12.61949 -12.26454 -12.21622 -11.95144 -11.76119 -11.45198 -11.26924 -10.77126 -10.67517 -10.63454 -9.94069 -9.48101 -9.03765 -8.25839 -6.40525 -0.05561 0.36473 1.31438 1.37305 1.44484 1.70198 1.83960 2.06720 2.28848 2.40518 2.92415 3.02926 3.44805 3.62109 3.97872 4.03760 4.19889 4.33419 4.35828 4.46131 4.52577 4.62329 4.84055 4.94365 4.98414 5.04350 5.14018 5.22529 5.32278 5.42024 5.47369 5.48446 5.55191 5.81115 5.83930 5.89947 6.02253 6.03433 6.64955 6.71846 6.95500 7.22797 7.40006 7.50654 8.81253 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.016015 B = 0.004682 C = 0.003845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.947163 B = 5978.949544 C = 7279.867004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.064 3.936 3 N -0.591 5.591 4 C 0.263 3.737 5 C -0.548 4.548 6 H 0.045 0.955 7 C 0.011 3.989 8 N -0.925 5.925 9 Si 0.967 3.033 10 H -0.284 1.284 11 H -0.270 1.270 12 H -0.258 1.258 13 C 0.530 3.470 14 O -0.602 6.602 15 C -0.128 4.128 16 C -0.142 4.142 17 C -0.090 4.090 18 C -0.110 4.110 19 C 0.149 3.851 20 N -0.664 5.664 21 C 0.690 3.310 22 N -0.835 5.835 23 O -0.630 6.630 24 C -0.108 4.108 25 H 0.111 0.889 26 H 0.045 0.955 27 H 0.068 0.932 28 H 0.126 0.874 29 H 0.067 0.933 30 H 0.034 0.966 31 H -0.006 1.006 32 H 0.269 0.731 33 H 0.178 0.822 34 H 0.184 0.816 35 H 0.180 0.820 36 H 0.432 0.568 37 H 0.420 0.580 38 H 0.423 0.577 39 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.556 -14.238 -25.106 28.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.057 4.057 3 N -0.321 5.321 4 C 0.142 3.858 5 C -0.587 4.587 6 H 0.063 0.937 7 C -0.189 4.189 8 N -0.565 5.565 9 Si 0.790 3.210 10 H -0.210 1.210 11 H -0.195 1.195 12 H -0.182 1.182 13 C 0.320 3.680 14 O -0.485 6.485 15 C -0.132 4.132 16 C -0.161 4.161 17 C -0.108 4.108 18 C -0.131 4.131 19 C 0.054 3.946 20 N -0.314 5.314 21 C 0.389 3.611 22 N -0.405 5.405 23 O -0.510 6.510 24 C -0.130 4.130 25 H 0.130 0.870 26 H 0.064 0.936 27 H 0.087 0.913 28 H 0.144 0.856 29 H 0.086 0.914 30 H 0.052 0.948 31 H 0.012 0.988 32 H 0.078 0.922 33 H 0.194 0.806 34 H 0.201 0.799 35 H 0.197 0.803 36 H 0.272 0.728 37 H 0.252 0.748 38 H 0.257 0.743 39 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -2.203 -13.446 -23.986 27.586 hybrid contribution 1.336 1.053 0.421 1.752 sum -0.867 -12.392 -23.566 26.640 Atomic orbital electron populations 1.22234 0.93520 1.04621 1.02235 1.22741 0.96261 0.81671 1.05025 1.48139 1.59742 1.14890 1.09294 1.18740 0.96320 0.89955 0.80782 1.21652 1.02692 1.28670 1.05665 0.93698 1.25829 1.00540 0.94272 0.98212 1.70029 1.35203 1.30199 1.21040 0.85495 0.78704 0.79162 0.77597 1.21035 1.19500 1.18202 1.19153 0.77569 0.86239 0.85000 1.90683 1.48682 1.22320 1.86842 1.19785 1.00595 0.99427 0.93370 1.22738 0.98880 0.93691 1.00743 1.21467 0.98718 0.99913 0.90666 1.21462 0.95114 0.94337 1.02169 1.17490 0.92964 0.95767 0.88415 1.42248 1.15137 1.63701 1.10300 1.16370 0.81101 0.78503 0.85166 1.42711 1.22735 1.66642 1.08443 1.91070 1.76226 1.62472 1.21188 1.21198 0.98201 0.99745 0.93841 0.87019 0.93579 0.91281 0.85639 0.91432 0.94838 0.98785 0.92215 0.80554 0.79863 0.80295 0.72805 0.74839 0.74343 0.87752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.39 9.04 71.98 0.65 -3.74 16 2 C 0.06 2.20 5.58 86.38 0.48 2.68 16 3 N -0.59 -28.75 2.49 -829.55 -2.06 -30.81 16 4 C 0.26 15.53 5.10 85.63 0.44 15.97 16 5 C -0.55 -34.67 9.39 25.60 0.24 -34.43 16 6 H 0.04 2.87 7.81 -2.91 -0.02 2.85 16 7 C 0.01 0.66 5.46 84.66 0.46 1.12 16 8 N -0.93 -58.78 13.29 21.45 0.28 -58.49 16 9 Si 0.97 48.25 29.54 68.60 2.03 50.28 16 10 H -0.28 -14.52 7.11 99.48 0.71 -13.82 16 11 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 12 H -0.26 -12.01 7.11 99.48 0.71 -11.30 16 13 C 0.53 27.26 7.52 86.79 0.65 27.91 16 14 O -0.60 -37.88 16.18 -3.87 -0.06 -37.94 16 15 C -0.13 -4.98 5.61 -20.10 -0.11 -5.09 16 16 C -0.14 -3.69 7.50 22.54 0.17 -3.53 16 17 C -0.09 -1.44 10.02 22.21 0.22 -1.22 16 18 C -0.11 -1.72 9.94 22.44 0.22 -1.50 16 19 C 0.15 3.77 6.39 38.10 0.24 4.01 16 20 N -0.66 -12.21 5.37 -317.27 -1.70 -13.91 16 21 C 0.69 17.18 8.62 179.06 1.54 18.73 16 22 N -0.84 -10.62 8.88 -184.75 -1.64 -12.26 16 23 O -0.63 -25.02 14.45 -4.00 -0.06 -25.08 16 24 C -0.11 -4.15 8.23 22.66 0.19 -3.97 16 25 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 26 H 0.05 1.43 7.50 -2.39 -0.02 1.41 16 27 H 0.07 1.68 7.01 -2.39 -0.02 1.66 16 28 H 0.13 3.60 4.05 -2.80 -0.01 3.59 16 29 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 30 H 0.03 1.94 7.40 -2.39 -0.02 1.93 16 31 H -0.01 -0.41 7.46 -2.39 -0.02 -0.42 16 32 H 0.27 15.92 8.31 -92.71 -0.77 15.15 16 33 H 0.18 4.07 2.27 -2.91 -0.01 4.06 16 34 H 0.18 1.15 8.06 -2.91 -0.02 1.13 16 35 H 0.18 0.95 8.06 -2.91 -0.02 0.93 16 36 H 0.43 3.05 8.81 -92.71 -0.82 2.23 16 37 H 0.42 1.38 8.85 -92.71 -0.82 0.56 16 38 H 0.42 5.15 8.93 -92.71 -0.83 4.32 16 39 H 0.10 5.06 5.70 -2.91 -0.02 5.04 16 Total: -1.00 -100.56 326.42 0.86 -99.71 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: -1.33 Total: 11.57 kcal Atomic # 6 Polarization: 11.55 SS G_CDS: 5.40 Total: 16.95 kcal Atomic # 7 Polarization: -110.36 SS G_CDS: -5.12 Total: -115.49 kcal Atomic # 8 Polarization: -62.90 SS G_CDS: -0.12 Total: -63.02 kcal Atomic # 14 Polarization: 48.25 SS G_CDS: 2.03 Total: 50.28 kcal Total: -100.56 0.86 -99.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000440595255.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.997 kcal (2) G-P(sol) polarization free energy of solvation -100.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds