Wall clock time and date at job start Tue Mar 31 2020 06:05:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46904 * 109.46731 * 2 1 4 4 C 1.46898 * 111.00395 * 297.99103 * 3 2 1 5 5 C 1.50709 * 109.47053 * 292.92952 * 4 3 2 6 6 H 1.07997 * 119.99800 * 354.96024 * 5 4 3 7 7 C 1.37871 * 119.99932 * 174.96213 * 5 4 3 8 8 N 1.31507 * 120.00306 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99961 * 179.97438 * 7 5 4 10 10 H 1.48510 * 109.47014 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47639 * 119.99816 * 9 7 5 12 12 H 1.48505 * 109.47126 * 240.00113 * 9 7 5 13 13 C 1.46896 * 111.00045 * 61.94740 * 3 2 1 14 14 C 1.50704 * 109.47499 * 66.04127 * 13 3 2 15 15 C 1.39874 * 125.89588 * 95.23424 * 14 13 3 16 16 C 1.35315 * 107.91527 * 180.14481 * 15 14 13 17 17 N 1.34943 * 107.74747 * 359.64411 * 16 15 14 18 18 C 1.46506 * 126.03548 * 180.25098 * 17 16 15 19 19 C 1.52993 * 109.47228 * 124.99859 * 18 17 16 20 20 F 1.39901 * 109.47466 * 59.99780 * 19 18 17 21 21 F 1.39904 * 109.47068 * 179.97438 * 19 18 17 22 22 F 1.39904 * 109.47316 * 299.99814 * 19 18 17 23 23 N 1.30834 * 125.89792 * 274.97982 * 14 13 3 24 24 H 1.09006 * 109.46886 * 179.65467 * 1 2 3 25 25 H 1.08996 * 109.47545 * 299.65928 * 1 2 3 26 26 H 1.09003 * 109.47249 * 59.66398 * 1 2 3 27 27 H 1.08999 * 109.47022 * 240.00323 * 2 1 3 28 28 H 1.09002 * 109.47124 * 119.99736 * 2 1 3 29 29 H 1.09003 * 109.47074 * 52.92391 * 4 3 2 30 30 H 1.08991 * 109.47719 * 172.92564 * 4 3 2 31 31 H 0.97002 * 120.00624 * 180.02562 * 8 7 5 32 32 H 1.09007 * 109.47343 * 306.04435 * 13 3 2 33 33 H 1.09000 * 109.47554 * 186.04796 * 13 3 2 34 34 H 1.07996 * 126.03767 * 0.02562 * 15 14 13 35 35 H 1.08004 * 126.12022 * 179.90350 * 16 15 14 36 36 H 1.09006 * 109.46743 * 244.99800 * 18 17 16 37 37 H 1.08994 * 109.47134 * 4.99446 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.5882 2.0960 -1.2109 5 6 2.2702 1.4978 -2.4145 6 1 3.0159 0.7274 -2.2851 7 6 1.9420 1.9340 -3.6805 8 7 1.0343 2.8725 -3.8379 9 14 2.7878 1.1931 -5.1722 10 1 3.7632 0.1649 -4.7283 11 1 1.7729 0.5646 -6.0554 12 1 3.5003 2.2611 -5.9186 13 6 1.5870 2.0963 1.2103 14 6 2.2482 1.4823 2.4173 15 6 3.4256 1.9311 3.0246 16 6 3.6906 1.1161 4.0718 17 7 2.7113 0.1895 4.1300 18 6 2.6018 -0.8880 5.1166 19 6 1.2370 -0.8135 5.8039 20 9 0.2251 -0.9522 4.8477 21 9 1.1323 -1.8428 6.7456 22 9 1.1051 0.4222 6.4465 23 7 1.8175 0.4403 3.0809 24 1 -0.3633 -1.0277 -0.0062 25 1 -0.3634 0.5085 0.8930 26 1 -0.3634 0.5191 -0.8870 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 0.5079 2.0025 -1.3217 30 1 1.8552 3.1495 -1.1284 31 1 0.8031 3.1792 -4.7287 32 1 0.5043 2.0184 1.3101 33 1 1.8702 3.1463 1.1356 34 1 4.0193 2.7772 2.7117 35 1 4.5326 1.1959 4.7434 36 1 2.7045 -1.8508 4.6160 37 1 3.3901 -0.7800 5.8616 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000450462883.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:37 Heat of formation + Delta-G solvation = -63.583837 kcal Electronic energy + Delta-G solvation = -23658.929449 eV Core-core repulsion = 19637.619203 eV Total energy + Delta-G solvation = -4021.310246 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.125 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -50.34506 -47.92772 -47.74077 -41.14794 -37.18437 -34.15666 -32.53350 -30.39792 -29.75698 -28.81266 -27.14899 -24.95383 -23.51161 -22.93039 -21.21553 -20.27492 -18.95531 -18.87650 -18.60924 -18.03131 -16.56665 -16.11161 -15.32259 -14.98283 -14.83776 -14.73464 -14.47493 -14.28882 -14.23512 -13.95645 -13.90709 -13.73533 -13.70788 -13.04567 -12.79966 -12.67048 -12.22401 -11.95995 -11.65451 -11.41257 -11.12837 -10.85079 -10.64152 -10.57128 -10.32273 -9.96788 -9.73148 -9.27318 -9.11155 -8.55838 -8.38981 -7.12998 -5.98613 -3.99023 1.72311 2.08981 2.47537 2.96788 3.33592 3.38786 3.41102 3.46265 3.58922 3.88434 4.38416 4.46981 4.61740 4.73918 4.93639 5.27284 5.36983 5.40436 5.82705 5.97130 6.01135 6.07750 6.16728 6.25380 6.34294 6.63414 6.73507 6.80077 6.88668 7.05640 7.34922 7.50281 7.79808 7.86015 8.13699 8.25311 8.59472 9.09384 9.64835 11.12105 Molecular weight = 291.13amu Principal moments of inertia in cm(-1) A = 0.031846 B = 0.003475 C = 0.003372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.021694 B = 8054.503733 C = 8301.135406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.062 3.938 3 N -0.528 5.528 4 C 0.188 3.812 5 C -0.501 4.501 6 H 0.063 0.937 7 C 0.055 3.945 8 N -0.899 5.899 9 Si 0.895 3.105 10 H -0.272 1.272 11 H -0.286 1.286 12 H -0.285 1.285 13 C 0.123 3.877 14 C 0.112 3.888 15 C -0.240 4.240 16 C 0.049 3.951 17 N -0.398 5.398 18 C 0.103 3.897 19 C 0.443 3.557 20 F -0.162 7.162 21 F -0.181 7.181 22 F -0.180 7.180 23 N -0.279 5.279 24 H 0.044 0.956 25 H 0.046 0.954 26 H 0.065 0.935 27 H 0.077 0.923 28 H 0.056 0.944 29 H 0.005 0.995 30 H 0.026 0.974 31 H 0.260 0.740 32 H 0.046 0.954 33 H 0.088 0.912 34 H 0.152 0.848 35 H 0.173 0.827 36 H 0.126 0.874 37 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.775 -6.302 20.967 22.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.066 4.066 3 N -0.252 5.252 4 C 0.063 3.937 5 C -0.540 4.540 6 H 0.081 0.919 7 C -0.146 4.146 8 N -0.539 5.539 9 Si 0.724 3.276 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.211 1.211 13 C -0.007 4.007 14 C -0.057 4.057 15 C -0.269 4.269 16 C -0.093 4.093 17 N -0.181 5.181 18 C -0.022 4.022 19 C 0.388 3.612 20 F -0.143 7.143 21 F -0.163 7.163 22 F -0.161 7.161 23 N -0.100 5.100 24 H 0.063 0.937 25 H 0.065 0.935 26 H 0.084 0.916 27 H 0.095 0.905 28 H 0.074 0.926 29 H 0.023 0.977 30 H 0.045 0.955 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.106 0.894 34 H 0.170 0.830 35 H 0.191 0.809 36 H 0.144 0.856 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 3.286 -7.189 21.035 22.472 hybrid contribution 0.001 0.243 -0.699 0.740 sum 3.286 -6.946 20.336 21.740 Atomic orbital electron populations 1.22325 0.99313 1.00898 1.01754 1.21954 0.92251 0.91122 1.01289 1.62338 1.59223 1.02148 1.01526 1.19816 0.94944 0.93696 0.85199 1.21171 1.21697 1.21148 0.89980 0.91900 1.24964 0.95336 0.95304 0.99000 1.69961 1.32136 1.29288 1.22542 0.86480 0.79379 0.79064 0.82724 1.19707 1.21194 1.21083 1.20527 0.96569 0.97346 0.86259 1.22582 0.94500 0.92684 0.95925 1.21495 1.00732 1.05214 0.99437 1.22458 0.94747 0.91190 1.00907 1.48106 1.21167 1.24546 1.24324 1.22608 0.94204 0.93498 0.91926 1.20696 0.89286 0.73810 0.77447 1.93303 1.62690 1.95242 1.63062 1.93207 1.96758 1.59567 1.66738 1.93216 1.96652 1.43613 1.82645 1.77579 1.14058 1.18874 0.99460 0.93662 0.93458 0.91568 0.90477 0.92562 0.97677 0.95548 0.93054 0.93630 0.89401 0.83021 0.80947 0.85618 0.84675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.60 9.26 37.16 0.34 -3.26 16 2 C 0.06 1.29 5.69 -3.82 -0.02 1.27 16 3 N -0.53 -11.48 4.68 -237.51 -1.11 -12.59 16 4 C 0.19 4.82 4.53 -4.97 -0.02 4.80 16 5 C -0.50 -13.98 8.40 -34.44 -0.29 -14.27 16 6 H 0.06 1.76 7.38 -52.49 -0.39 1.38 16 7 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.90 -26.55 13.29 55.43 0.74 -25.81 16 9 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 10 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 13 C 0.12 2.29 5.31 -4.98 -0.03 2.26 16 14 C 0.11 1.87 5.97 -82.40 -0.49 1.37 16 15 C -0.24 -3.31 10.74 -40.01 -0.43 -3.74 16 16 C 0.05 0.54 11.45 -17.23 -0.20 0.34 16 17 N -0.40 -4.84 3.60 -61.37 -0.22 -5.06 16 18 C 0.10 0.81 6.51 -4.04 -0.03 0.78 16 19 C 0.44 4.48 3.28 37.15 0.12 4.60 16 20 F -0.16 -2.17 16.28 2.25 0.04 -2.13 16 21 F -0.18 -1.65 17.32 2.25 0.04 -1.61 16 22 F -0.18 -2.07 17.24 2.25 0.04 -2.03 16 23 N -0.28 -4.52 10.42 33.67 0.35 -4.17 16 24 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.05 0.89 6.34 -51.93 -0.33 0.56 16 26 H 0.07 1.44 6.28 -51.93 -0.33 1.12 16 27 H 0.08 1.72 6.98 -51.93 -0.36 1.35 16 28 H 0.06 1.11 6.42 -51.93 -0.33 0.78 16 29 H 0.01 0.15 6.01 -51.93 -0.31 -0.16 16 30 H 0.03 0.71 7.91 -51.93 -0.41 0.30 16 31 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 32 H 0.05 0.86 6.07 -51.93 -0.32 0.55 16 33 H 0.09 1.55 7.92 -51.93 -0.41 1.13 16 34 H 0.15 1.87 8.06 -52.49 -0.42 1.45 16 35 H 0.17 1.10 8.06 -52.48 -0.42 0.68 16 36 H 0.13 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.14 0.49 8.07 -51.93 -0.42 0.07 16 LS Contribution 320.37 15.07 4.83 4.83 Total: -1.00 -32.53 320.37 -5.89 -38.42 By element: Atomic # 1 Polarization: 2.35 SS G_CDS: -4.43 Total: -2.09 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: -1.14 Total: -4.40 kcal Atomic # 7 Polarization: -47.39 SS G_CDS: -0.25 Total: -47.64 kcal Atomic # 9 Polarization: -5.89 SS G_CDS: 0.11 Total: -5.77 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -32.53 -5.89 -38.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000450462883.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.164 kcal (2) G-P(sol) polarization free energy of solvation -32.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds