Wall clock time and date at job start Tue Mar 31 2020 06:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46507 * 109.47073 * 2 1 4 4 C 1.34771 * 120.00235 * 179.97438 * 3 2 1 5 5 O 1.21546 * 119.99845 * 0.02562 * 4 3 2 6 6 N 1.34770 * 120.00131 * 179.97438 * 4 3 2 7 7 C 1.34780 * 120.00022 * 179.97438 * 6 4 3 8 8 O 1.21227 * 120.00054 * 0.02562 * 7 6 4 9 9 C 1.50706 * 119.99802 * 180.02562 * 7 6 4 10 10 N 1.46504 * 109.46869 * 180.02562 * 9 7 6 11 11 C 1.39685 * 119.99856 * 179.97438 * 10 9 7 12 12 C 1.39337 * 119.95014 * 359.97438 * 11 10 9 13 13 C 1.38475 * 120.42035 * 180.02562 * 12 11 10 14 14 C 1.37684 * 120.32918 * 359.97438 * 13 12 11 15 15 C 1.40751 * 119.89421 * 0.03199 * 14 13 12 16 16 C 1.41406 * 120.20989 * 179.97438 * 15 14 13 17 17 H 1.07998 * 119.99858 * 24.36605 * 16 15 14 18 18 C 1.39935 * 119.99740 * 204.36617 * 16 15 14 19 19 N 1.30827 * 120.00201 * 17.83614 * 18 16 15 20 20 Si 1.86796 * 119.99610 * 197.83636 * 18 16 15 21 21 H 1.48497 * 109.47206 * 89.99987 * 20 18 16 22 22 H 1.48507 * 109.47251 * 209.99859 * 20 18 16 23 23 H 1.48501 * 109.47426 * 329.99960 * 20 18 16 24 24 C 1.38280 * 119.95177 * 179.97438 * 11 10 9 25 25 H 1.09005 * 109.47117 * 60.00432 * 1 2 3 26 26 H 1.09005 * 109.46588 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47629 * 300.00033 * 1 2 3 28 28 H 1.08998 * 109.47629 * 239.99967 * 2 1 3 29 29 H 1.09005 * 109.47117 * 119.99568 * 2 1 3 30 30 H 0.96999 * 119.99794 * 359.97438 * 3 2 1 31 31 H 0.96999 * 119.99897 * 0.02562 * 6 4 3 32 32 H 1.08998 * 109.47065 * 59.99963 * 9 7 6 33 33 H 1.09005 * 109.46976 * 299.99996 * 9 7 6 34 34 H 0.96998 * 120.00141 * 0.02562 * 10 9 7 35 35 H 1.07997 * 119.78902 * 0.02562 * 12 11 10 36 36 H 1.08005 * 119.83675 * 179.97438 * 13 12 11 37 37 H 1.08001 * 120.05769 * 179.97438 * 14 13 12 38 38 H 0.97003 * 119.99955 * 179.97438 * 19 18 16 39 39 H 1.08002 * 120.15877 * 359.70841 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 3.3433 1.6276 0.0005 5 8 4.1332 0.7038 0.0005 6 7 3.7925 2.8983 0.0000 7 6 5.1176 3.1446 0.0010 8 8 5.9054 2.2232 0.0020 9 6 5.6199 4.5655 0.0010 10 7 7.0849 4.5655 0.0017 11 6 7.7833 5.7753 0.0012 12 6 7.0855 6.9813 -0.0003 13 6 7.7680 8.1862 -0.0013 14 6 9.1447 8.2055 -0.0002 15 6 9.8632 6.9952 0.0012 16 6 11.2772 7.0072 0.0018 17 1 11.8097 7.8641 0.3871 18 6 11.9864 5.9087 -0.4969 19 7 11.3871 5.0388 -1.2686 20 14 13.7888 5.6846 -0.0605 21 1 13.9009 4.8780 1.1812 22 1 14.4834 4.9838 -1.1704 23 1 14.4151 7.0138 0.1544 24 6 9.1661 5.7742 0.0024 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.3879 2.1185 -0.0004 31 1 3.1622 3.6355 -0.0004 32 1 5.2558 5.0795 0.8905 33 1 5.2572 5.0790 -0.8894 34 1 7.5699 3.7255 0.0016 35 1 6.0055 6.9763 -0.0008 36 1 7.2176 9.1155 -0.0029 37 1 9.6725 9.1477 -0.0014 38 1 11.8788 4.2776 -1.6146 39 1 9.7079 4.8399 0.0083 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453146625.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:27 Heat of formation + Delta-G solvation = -40.806517 kcal Electronic energy + Delta-G solvation = -21936.734224 eV Core-core repulsion = 18458.268416 eV Total energy + Delta-G solvation = -3478.465807 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.27158 -38.82862 -37.61736 -35.58661 -34.73191 -34.64991 -33.17615 -30.85417 -29.42629 -29.26765 -26.14001 -25.17915 -23.76732 -22.06809 -21.11801 -20.60105 -19.88732 -19.07675 -17.54246 -17.01105 -16.49033 -16.02827 -15.49424 -15.37137 -15.11659 -14.70299 -14.53657 -14.25770 -14.14051 -13.45830 -12.94849 -12.93055 -12.65811 -12.60067 -12.27915 -12.12443 -11.94958 -11.55898 -11.15275 -11.06172 -11.00807 -10.59478 -10.39182 -10.25780 -9.73459 -9.63251 -9.45865 -9.45618 -9.26582 -8.81037 -7.31255 -6.70125 -6.21612 -4.29020 1.98929 2.09635 2.89549 3.11849 3.14343 3.17332 3.23444 3.35167 3.59918 4.01319 4.30035 4.49643 4.52446 4.66435 4.74162 4.89562 5.35582 5.41426 5.46592 5.48238 5.53561 5.85442 5.90022 6.02085 6.19157 6.27855 6.51705 6.85840 7.07150 7.16335 7.23933 7.38845 7.43922 7.78080 7.91431 7.95126 8.09093 8.16506 8.19117 8.49302 8.67925 8.84015 9.03112 9.11740 10.28857 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.026395 B = 0.002833 C = 0.002581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.532903 B = 9881.006844 C =10846.396745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.129 3.871 3 N -0.741 5.741 4 C 0.692 3.308 5 O -0.530 6.530 6 N -0.691 5.691 7 C 0.511 3.489 8 O -0.459 6.459 9 C 0.125 3.875 10 N -0.751 5.751 11 C 0.216 3.784 12 C -0.304 4.304 13 C -0.065 4.065 14 C -0.256 4.256 15 C 0.139 3.861 16 C -0.464 4.464 17 H 0.077 0.923 18 C 0.077 3.923 19 N -0.789 5.789 20 Si 0.906 3.094 21 H -0.268 1.268 22 H -0.279 1.279 23 H -0.263 1.263 24 C -0.227 4.227 25 H 0.062 0.938 26 H 0.076 0.924 27 H 0.062 0.938 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.398 0.602 31 H 0.410 0.590 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.403 0.597 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.089 0.911 38 H 0.279 0.721 39 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.997 -5.188 1.748 21.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.005 3.995 3 N -0.399 5.399 4 C 0.392 3.608 5 O -0.401 6.401 6 N -0.358 5.358 7 C 0.297 3.703 8 O -0.325 6.325 9 C -0.005 4.005 10 N -0.390 5.390 11 C 0.118 3.882 12 C -0.327 4.327 13 C -0.084 4.084 14 C -0.276 4.276 15 C 0.136 3.864 16 C -0.493 4.493 17 H 0.095 0.905 18 C -0.141 4.141 19 N -0.414 5.414 20 Si 0.730 3.270 21 H -0.193 1.193 22 H -0.204 1.204 23 H -0.187 1.187 24 C -0.251 4.251 25 H 0.081 0.919 26 H 0.095 0.905 27 H 0.081 0.919 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.232 0.768 31 H 0.245 0.755 32 H 0.104 0.896 33 H 0.104 0.896 34 H 0.240 0.760 35 H 0.103 0.897 36 H 0.105 0.895 37 H 0.107 0.893 38 H 0.090 0.910 39 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -19.858 -6.807 1.597 21.053 hybrid contribution 0.108 0.331 0.047 0.352 sum -19.750 -6.476 1.644 20.849 Atomic orbital electron populations 1.22013 0.94134 1.03461 1.02602 1.21242 0.94046 0.81368 1.02816 1.45313 1.04965 1.09652 1.79998 1.16164 0.83092 0.83123 0.78421 1.91090 1.54368 1.42407 1.52229 1.44140 1.09834 1.08640 1.73187 1.21208 0.80799 0.92884 0.75392 1.90830 1.54030 1.46022 1.41656 1.20799 0.86012 0.90408 1.03260 1.44179 1.01481 1.07314 1.85989 1.17590 0.91391 0.83855 0.95361 1.19838 0.96446 0.91569 1.24841 1.20265 0.94247 0.95257 0.98651 1.20869 0.93128 0.96925 1.16724 1.17328 0.92955 0.90210 0.85943 1.19567 0.91434 1.01873 1.36455 0.90473 1.25904 1.00682 0.94903 0.92646 1.69853 1.38471 1.10756 1.22279 0.86362 0.82190 0.79407 0.79010 1.19347 1.20432 1.18691 1.20741 0.89805 0.99287 1.15251 0.91857 0.90506 0.91871 0.91281 0.91291 0.76779 0.75457 0.89620 0.89607 0.76021 0.89682 0.89549 0.89315 0.91009 0.86380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.59 10.03 37.16 0.37 -0.22 16 2 C 0.13 0.90 6.39 -4.04 -0.03 0.88 16 3 N -0.74 -5.55 5.56 -65.23 -0.36 -5.92 16 4 C 0.69 8.64 8.50 -86.93 -0.74 7.90 16 5 O -0.53 -9.72 14.74 -18.48 -0.27 -9.99 16 6 N -0.69 -7.13 5.24 -15.78 -0.08 -7.22 16 7 C 0.51 7.57 7.84 -10.98 -0.09 7.48 16 8 O -0.46 -9.26 14.07 -18.20 -0.26 -9.51 16 9 C 0.12 1.78 5.39 -5.19 -0.03 1.76 16 10 N -0.75 -14.98 5.70 -59.85 -0.34 -15.32 16 11 C 0.22 5.04 6.64 -83.86 -0.56 4.48 16 12 C -0.30 -6.61 9.32 -39.09 -0.36 -6.98 16 13 C -0.07 -1.47 10.01 -39.70 -0.40 -1.86 16 14 C -0.26 -6.40 9.79 -38.83 -0.38 -6.78 16 15 C 0.14 3.80 5.57 -106.85 -0.60 3.20 16 16 C -0.46 -12.63 9.05 -37.74 -0.34 -12.97 16 17 H 0.08 2.02 7.91 -52.49 -0.41 1.60 16 18 C 0.08 1.99 5.14 -17.34 -0.09 1.90 16 19 N -0.79 -21.17 10.95 55.55 0.61 -20.57 16 20 Si 0.91 19.35 29.59 -169.99 -5.03 14.32 16 21 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 22 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 23 H -0.26 -5.51 7.11 56.52 0.40 -5.11 16 24 C -0.23 -6.05 8.53 -38.68 -0.33 -6.38 16 25 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 26 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 27 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.40 1.48 8.49 -40.82 -0.35 1.13 16 31 H 0.41 2.08 8.71 -40.82 -0.36 1.72 16 32 H 0.09 1.05 7.94 -51.93 -0.41 0.64 16 33 H 0.09 1.08 7.94 -51.93 -0.41 0.67 16 34 H 0.40 8.58 7.44 -40.82 -0.30 8.28 16 35 H 0.09 1.55 6.70 -52.49 -0.35 1.20 16 36 H 0.09 1.66 8.06 -52.48 -0.42 1.24 16 37 H 0.09 2.10 8.06 -52.49 -0.42 1.67 16 38 H 0.28 6.89 8.30 -40.82 -0.34 6.55 16 39 H 0.12 3.31 6.16 -52.49 -0.32 2.99 16 LS Contribution 335.81 15.07 5.06 5.06 Total: -1.00 -36.02 335.81 -9.25 -45.28 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: -5.01 Total: 11.46 kcal Atomic # 6 Polarization: -4.03 SS G_CDS: -3.56 Total: -7.59 kcal Atomic # 7 Polarization: -48.84 SS G_CDS: -0.18 Total: -49.02 kcal Atomic # 8 Polarization: -18.97 SS G_CDS: -0.53 Total: -19.50 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -5.03 Total: 14.32 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -36.02 -9.25 -45.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453146625.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.469 kcal (2) G-P(sol) polarization free energy of solvation -36.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds