Wall clock time and date at job start Tue Mar 31 2020 06:22:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21275 * 120.00104 * 2 1 4 4 N 1.34782 * 119.99619 * 180.02562 * 2 1 3 5 5 C 1.46500 * 119.99349 * 179.97438 * 4 2 1 6 6 C 1.50699 * 109.46756 * 179.97438 * 5 4 2 7 7 C 1.38281 * 119.93447 * 269.72023 * 6 5 4 8 8 C 1.38115 * 120.07615 * 179.76578 * 7 6 5 9 9 C 1.38871 * 119.92385 * 0.51543 * 8 7 6 10 10 N 1.39937 * 120.06641 * 179.72542 * 9 8 7 11 11 C 1.34783 * 119.99881 * 213.28925 * 10 9 8 12 12 O 1.21584 * 119.99639 * 5.31797 * 11 10 9 13 13 N 1.34770 * 120.00077 * 185.31231 * 11 10 9 14 14 C 1.46496 * 119.99999 * 180.02562 * 13 11 10 15 15 C 1.50702 * 109.47401 * 180.02562 * 14 13 11 16 16 H 1.08003 * 119.99770 * 0.02562 * 15 14 13 17 17 C 1.37877 * 120.00229 * 179.97438 * 15 14 13 18 18 N 1.31510 * 120.00066 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99891 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47194 * 60.00490 * 19 17 15 21 21 H 1.48510 * 109.46966 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47454 * 299.99617 * 19 17 15 23 23 C 1.38864 * 119.86222 * 359.73925 * 9 8 7 24 24 C 1.38122 * 119.92992 * 0.02562 * 23 9 8 25 25 H 1.08997 * 109.47140 * 239.99320 * 1 2 3 26 26 H 1.08994 * 109.46994 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.46990 * 119.99528 * 1 2 3 28 28 H 0.96996 * 120.00551 * 359.97438 * 4 2 1 29 29 H 1.09002 * 109.47093 * 59.99913 * 5 4 2 30 30 H 1.08994 * 109.47554 * 299.99497 * 5 4 2 31 31 H 1.08010 * 119.95961 * 0.02562 * 7 6 5 32 32 H 1.07997 * 120.03924 * 180.25713 * 8 7 6 33 33 H 0.96996 * 120.00428 * 33.28503 * 10 9 8 34 34 H 0.97002 * 120.00149 * 0.02562 * 13 11 10 35 35 H 1.09009 * 109.47210 * 300.00208 * 14 13 11 36 36 H 1.09001 * 109.47151 * 60.00115 * 14 13 11 37 37 H 0.96999 * 120.00659 * 179.97438 * 18 17 15 38 38 H 1.07996 * 120.03599 * 179.97438 * 23 9 8 39 39 H 1.08000 * 119.96152 * 179.97438 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1673 -0.0005 5 6 3.6459 -1.1672 -0.0011 6 6 4.1482 -2.5880 -0.0010 7 6 4.3841 -3.2364 1.1974 8 6 4.8399 -4.5402 1.2010 9 6 5.0714 -5.1964 -0.0008 10 7 5.5387 -6.5155 -0.0007 11 6 6.3669 -6.9371 -0.9769 12 8 6.7851 -6.1482 -1.8021 13 7 6.7316 -8.2330 -1.0381 14 6 7.6323 -8.6912 -2.0988 15 6 7.8803 -10.1695 -1.9436 16 1 7.4133 -10.7135 -1.1358 17 6 8.7025 -10.8278 -2.8333 18 7 9.2707 -10.1655 -3.8172 19 14 9.0093 -12.6604 -2.6412 20 1 7.7199 -13.3908 -2.7365 21 1 9.9224 -13.1248 -3.7164 22 1 9.6301 -12.9224 -1.3179 23 6 4.8385 -4.5408 -1.2026 24 6 4.3781 -3.2386 -1.1993 25 1 -0.3633 -0.5139 0.8899 26 1 -0.3633 1.0276 0.0005 27 1 -0.3633 -0.5138 -0.8900 28 1 1.6959 -2.0073 -0.0005 29 1 4.0095 -0.6535 0.8889 30 1 4.0089 -0.6533 -0.8911 31 1 4.2078 -2.7240 2.1318 32 1 5.0201 -5.0474 2.1373 33 1 5.2666 -7.1263 0.7019 34 1 6.3977 -8.8625 -0.3799 35 1 7.1766 -8.4996 -3.0704 36 1 8.5784 -8.1544 -2.0291 37 1 9.8495 -10.6285 -4.4430 38 1 5.0180 -5.0483 -2.1388 39 1 4.1972 -2.7281 -2.1337 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000488067133.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:44 Heat of formation + Delta-G solvation = -48.741529 kcal Electronic energy + Delta-G solvation = -21534.293267 eV Core-core repulsion = 18055.483372 eV Total energy + Delta-G solvation = -3478.809895 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.41544 -39.77332 -38.54509 -35.57816 -34.33207 -34.03745 -32.43425 -31.13463 -30.95644 -29.39184 -27.27280 -25.39373 -23.12393 -22.74683 -21.36651 -20.87478 -20.27551 -18.31672 -17.66519 -17.27878 -16.46335 -16.11464 -15.83016 -15.32268 -15.05601 -14.94759 -14.50844 -14.24595 -13.82735 -13.66586 -13.50389 -13.21568 -13.09327 -12.98438 -12.68973 -12.27268 -12.04697 -12.00859 -11.60509 -11.23431 -11.03787 -10.94002 -10.37453 -10.36742 -10.03758 -9.57738 -9.47208 -9.35781 -8.93350 -8.81080 -8.18115 -7.80234 -6.21892 -4.29442 1.16768 1.39291 2.37510 3.00393 3.08036 3.21603 3.27114 3.28717 3.57432 3.95952 4.26780 4.47860 4.61942 4.73624 4.85168 4.92997 4.97074 5.00641 5.14259 5.17253 5.34183 5.41684 5.54912 5.64571 5.70877 5.98057 6.12371 6.21645 6.35151 6.52537 6.61974 6.95575 7.09962 7.23886 7.31576 7.42603 7.45390 7.74826 7.92465 7.94633 8.60645 8.76292 9.10104 9.37521 10.88133 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.049820 B = 0.002229 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.887357 B =12557.299329 C =12714.724390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.507 3.493 3 O -0.550 6.550 4 N -0.726 5.726 5 C 0.166 3.834 6 C -0.144 4.144 7 C -0.079 4.079 8 C -0.160 4.160 9 C 0.195 3.805 10 N -0.697 5.697 11 C 0.689 3.311 12 O -0.580 6.580 13 N -0.721 5.721 14 C 0.266 3.734 15 C -0.546 4.546 16 H 0.063 0.937 17 C 0.064 3.936 18 N -0.884 5.884 19 Si 0.906 3.094 20 H -0.275 1.275 21 H -0.285 1.285 22 H -0.275 1.275 23 C -0.124 4.124 24 C -0.078 4.078 25 H 0.087 0.913 26 H 0.091 0.909 27 H 0.088 0.912 28 H 0.403 0.597 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.123 0.877 32 H 0.125 0.875 33 H 0.404 0.596 34 H 0.389 0.611 35 H 0.027 0.973 36 H 0.027 0.973 37 H 0.267 0.733 38 H 0.141 0.859 39 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.880 12.821 10.951 23.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.294 3.706 3 O -0.428 6.428 4 N -0.379 5.379 5 C 0.043 3.957 6 C -0.146 4.146 7 C -0.098 4.098 8 C -0.181 4.181 9 C 0.098 3.902 10 N -0.344 5.344 11 C 0.389 3.611 12 O -0.458 6.458 13 N -0.372 5.372 14 C 0.145 3.855 15 C -0.584 4.584 16 H 0.081 0.919 17 C -0.140 4.140 18 N -0.521 5.521 19 Si 0.733 3.267 20 H -0.201 1.201 21 H -0.210 1.210 22 H -0.201 1.201 23 C -0.145 4.145 24 C -0.097 4.097 25 H 0.106 0.894 26 H 0.110 0.890 27 H 0.106 0.894 28 H 0.237 0.763 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.141 0.859 32 H 0.143 0.857 33 H 0.239 0.761 34 H 0.221 0.779 35 H 0.045 0.955 36 H 0.045 0.955 37 H 0.077 0.923 38 H 0.159 0.841 39 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -15.834 14.156 9.938 23.449 hybrid contribution -0.148 -2.165 0.710 2.283 sum -15.982 11.991 10.647 22.640 Atomic orbital electron populations 1.21920 0.91710 1.05480 1.04298 1.20848 0.90635 0.83465 0.75608 1.90730 1.70927 1.31480 1.49661 1.46224 1.07321 1.08829 1.75496 1.20120 0.79480 0.93192 1.02904 1.19674 1.05532 0.95726 0.93660 1.20743 0.98068 0.93745 0.97289 1.20835 1.05498 0.95230 0.96527 1.17641 0.94426 0.84322 0.93855 1.42915 1.50457 1.11005 1.30041 1.16175 0.79313 0.83967 0.81604 1.90906 1.59191 1.53860 1.41817 1.45801 1.51446 1.05814 1.34158 1.19064 0.87857 0.94080 0.84493 1.21158 1.30421 0.92891 1.13949 0.91917 1.24945 0.95227 0.99018 0.94791 1.69957 1.30438 1.36514 1.15199 0.86445 0.78248 0.84135 0.77895 1.20056 1.21024 1.20066 1.21305 0.99372 0.95440 0.98378 1.20941 0.97297 0.94090 0.97367 0.89423 0.89036 0.89355 0.76287 0.90846 0.90751 0.85892 0.85701 0.76135 0.77870 0.95454 0.95475 0.92292 0.84130 0.85806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.87 10.32 36.01 0.37 -0.50 16 2 C 0.51 4.67 7.94 -10.98 -0.09 4.59 16 3 O -0.55 -7.66 17.09 5.56 0.10 -7.57 16 4 N -0.73 -5.68 5.55 -61.47 -0.34 -6.02 16 5 C 0.17 1.55 5.80 -5.19 -0.03 1.52 16 6 C -0.14 -1.45 5.25 -104.59 -0.55 -2.00 16 7 C -0.08 -0.76 9.69 -39.61 -0.38 -1.15 16 8 C -0.16 -1.73 9.96 -39.39 -0.39 -2.12 16 9 C 0.19 2.67 6.28 -83.69 -0.53 2.15 16 10 N -0.70 -9.97 5.35 -14.23 -0.08 -10.05 16 11 C 0.69 13.46 8.30 -86.92 -0.72 12.74 16 12 O -0.58 -13.67 14.03 5.29 0.07 -13.59 16 13 N -0.72 -14.57 5.55 -66.41 -0.37 -14.94 16 14 C 0.27 6.86 5.43 -5.19 -0.03 6.83 16 15 C -0.55 -14.42 9.28 -34.44 -0.32 -14.74 16 16 H 0.06 1.54 7.60 -52.48 -0.40 1.14 16 17 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 18 N -0.88 -25.58 13.29 55.43 0.74 -24.85 16 19 Si 0.91 20.42 29.54 -169.99 -5.02 15.40 16 20 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 21 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 22 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 23 C -0.12 -1.81 8.66 -39.39 -0.34 -2.15 16 24 C -0.08 -0.91 9.69 -39.61 -0.38 -1.30 16 25 H 0.09 0.28 8.14 -51.93 -0.42 -0.15 16 26 H 0.09 0.49 8.12 -51.93 -0.42 0.07 16 27 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.40 2.28 8.46 -40.82 -0.35 1.93 16 29 H 0.07 0.70 8.08 -51.93 -0.42 0.28 16 30 H 0.07 0.76 8.08 -51.93 -0.42 0.34 16 31 H 0.12 0.93 8.06 -52.48 -0.42 0.50 16 32 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 33 H 0.40 4.29 8.83 -40.82 -0.36 3.93 16 34 H 0.39 6.57 8.34 -40.82 -0.34 6.23 16 35 H 0.03 0.78 8.14 -51.92 -0.42 0.36 16 36 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 38 H 0.14 2.41 6.41 -52.49 -0.34 2.07 16 39 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 LS Contribution 342.74 15.07 5.17 5.17 Total: -1.00 -34.52 342.74 -8.36 -42.88 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -5.14 Total: 8.06 kcal Atomic # 6 Polarization: 9.00 SS G_CDS: -3.49 Total: 5.52 kcal Atomic # 7 Polarization: -55.80 SS G_CDS: -0.05 Total: -55.85 kcal Atomic # 8 Polarization: -21.33 SS G_CDS: 0.17 Total: -21.16 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -34.52 -8.36 -42.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488067133.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.864 kcal (2) G-P(sol) polarization free energy of solvation -34.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds