Wall clock time and date at job start Tue Mar 31 2020 06:22:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21275 * 120.00104 * 2 1 4 4 N 1.34782 * 119.99619 * 180.02562 * 2 1 3 5 5 C 1.46500 * 119.99349 * 179.97438 * 4 2 1 6 6 C 1.50699 * 109.46756 * 179.97438 * 5 4 2 7 7 C 1.38281 * 119.93447 * 269.72023 * 6 5 4 8 8 C 1.38115 * 120.07615 * 179.76578 * 7 6 5 9 9 C 1.38871 * 119.92385 * 0.51543 * 8 7 6 10 10 N 1.39937 * 120.06641 * 179.72542 * 9 8 7 11 11 C 1.34783 * 119.99881 * 213.28925 * 10 9 8 12 12 O 1.21584 * 119.99639 * 5.31797 * 11 10 9 13 13 N 1.34770 * 120.00077 * 185.31231 * 11 10 9 14 14 C 1.46496 * 119.99999 * 180.02562 * 13 11 10 15 15 C 1.50702 * 109.47401 * 180.02562 * 14 13 11 16 16 H 1.08003 * 119.99770 * 0.02562 * 15 14 13 17 17 C 1.37877 * 120.00229 * 179.97438 * 15 14 13 18 18 N 1.31510 * 120.00066 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99891 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47194 * 60.00490 * 19 17 15 21 21 H 1.48510 * 109.46966 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47454 * 299.99617 * 19 17 15 23 23 C 1.38864 * 119.86222 * 359.73925 * 9 8 7 24 24 C 1.38122 * 119.92992 * 0.02562 * 23 9 8 25 25 H 1.08997 * 109.47140 * 239.99320 * 1 2 3 26 26 H 1.08994 * 109.46994 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.46990 * 119.99528 * 1 2 3 28 28 H 0.96996 * 120.00551 * 359.97438 * 4 2 1 29 29 H 1.09002 * 109.47093 * 59.99913 * 5 4 2 30 30 H 1.08994 * 109.47554 * 299.99497 * 5 4 2 31 31 H 1.08010 * 119.95961 * 0.02562 * 7 6 5 32 32 H 1.07997 * 120.03924 * 180.25713 * 8 7 6 33 33 H 0.96996 * 120.00428 * 33.28503 * 10 9 8 34 34 H 0.97002 * 120.00149 * 0.02562 * 13 11 10 35 35 H 1.09009 * 109.47210 * 300.00208 * 14 13 11 36 36 H 1.09001 * 109.47151 * 60.00115 * 14 13 11 37 37 H 0.96999 * 120.00659 * 179.97438 * 18 17 15 38 38 H 1.07996 * 120.03599 * 179.97438 * 23 9 8 39 39 H 1.08000 * 119.96152 * 179.97438 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1673 -0.0005 5 6 3.6459 -1.1672 -0.0011 6 6 4.1482 -2.5880 -0.0010 7 6 4.3841 -3.2364 1.1974 8 6 4.8399 -4.5402 1.2010 9 6 5.0714 -5.1964 -0.0008 10 7 5.5387 -6.5155 -0.0007 11 6 6.3669 -6.9371 -0.9769 12 8 6.7851 -6.1482 -1.8021 13 7 6.7316 -8.2330 -1.0381 14 6 7.6323 -8.6912 -2.0988 15 6 7.8803 -10.1695 -1.9436 16 1 7.4133 -10.7135 -1.1358 17 6 8.7025 -10.8278 -2.8333 18 7 9.2707 -10.1655 -3.8172 19 14 9.0093 -12.6604 -2.6412 20 1 7.7199 -13.3908 -2.7365 21 1 9.9224 -13.1248 -3.7164 22 1 9.6301 -12.9224 -1.3179 23 6 4.8385 -4.5408 -1.2026 24 6 4.3781 -3.2386 -1.1993 25 1 -0.3633 -0.5139 0.8899 26 1 -0.3633 1.0276 0.0005 27 1 -0.3633 -0.5138 -0.8900 28 1 1.6959 -2.0073 -0.0005 29 1 4.0095 -0.6535 0.8889 30 1 4.0089 -0.6533 -0.8911 31 1 4.2078 -2.7240 2.1318 32 1 5.0201 -5.0474 2.1373 33 1 5.2666 -7.1263 0.7019 34 1 6.3977 -8.8625 -0.3799 35 1 7.1766 -8.4996 -3.0704 36 1 8.5784 -8.1544 -2.0291 37 1 9.8495 -10.6285 -4.4430 38 1 5.0180 -5.0483 -2.1388 39 1 4.1972 -2.7281 -2.1337 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000488067133.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:43 Heat of formation + Delta-G solvation = -75.428699 kcal Electronic energy + Delta-G solvation = -21535.450510 eV Core-core repulsion = 18055.483372 eV Total energy + Delta-G solvation = -3479.967138 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.66261 -40.66636 -39.69286 -36.72974 -36.07350 -35.18011 -34.33805 -31.98575 -31.89696 -30.23709 -29.05207 -26.41308 -24.74325 -23.94350 -22.55624 -21.71327 -21.58721 -19.89836 -18.82845 -18.06129 -17.97053 -17.24867 -16.87938 -16.76593 -16.42777 -15.97282 -15.90632 -15.60456 -15.04606 -14.69388 -14.46177 -14.39441 -14.21718 -14.05205 -13.74302 -13.65368 -13.30380 -12.93065 -12.88469 -12.69240 -12.55760 -12.24975 -12.17058 -11.51740 -11.47778 -11.21146 -10.92287 -10.80477 -10.11321 -9.94484 -9.87241 -9.00902 -8.29294 -6.46055 0.19644 0.46087 1.43530 1.47899 1.55656 1.67881 1.70863 2.03871 2.38497 2.39814 2.94477 3.05914 3.38147 3.71545 3.89292 4.01729 4.07782 4.28851 4.44868 4.54957 4.59855 4.70045 4.76046 4.77494 5.00556 5.10729 5.14023 5.23767 5.25662 5.35824 5.42438 5.43808 5.56091 5.60323 5.65884 5.81733 6.05804 6.17516 6.60709 6.64704 7.15140 7.24482 7.28447 7.57411 8.82578 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.049820 B = 0.002229 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.887357 B =12557.299329 C =12714.724390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.503 3.497 3 O -0.604 6.604 4 N -0.715 5.715 5 C 0.169 3.831 6 C -0.128 4.128 7 C -0.070 4.070 8 C -0.144 4.144 9 C 0.165 3.835 10 N -0.674 5.674 11 C 0.690 3.310 12 O -0.626 6.626 13 N -0.715 5.715 14 C 0.285 3.715 15 C -0.557 4.557 16 H 0.086 0.914 17 C 0.004 3.996 18 N -0.930 5.930 19 Si 0.986 3.014 20 H -0.262 1.262 21 H -0.287 1.287 22 H -0.262 1.262 23 C -0.150 4.150 24 C -0.081 4.081 25 H 0.113 0.887 26 H 0.087 0.913 27 H 0.108 0.892 28 H 0.416 0.584 29 H 0.077 0.923 30 H 0.062 0.938 31 H 0.157 0.843 32 H 0.155 0.845 33 H 0.424 0.576 34 H 0.408 0.592 35 H -0.011 1.011 36 H -0.012 1.012 37 H 0.269 0.731 38 H 0.103 0.897 39 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.767 12.001 13.862 26.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.292 3.708 3 O -0.486 6.486 4 N -0.368 5.368 5 C 0.046 3.954 6 C -0.129 4.129 7 C -0.089 4.089 8 C -0.165 4.165 9 C 0.069 3.931 10 N -0.323 5.323 11 C 0.390 3.610 12 O -0.507 6.507 13 N -0.368 5.368 14 C 0.162 3.838 15 C -0.594 4.594 16 H 0.104 0.896 17 C -0.196 4.196 18 N -0.568 5.568 19 Si 0.809 3.191 20 H -0.186 1.186 21 H -0.212 1.212 22 H -0.187 1.187 23 C -0.171 4.171 24 C -0.101 4.101 25 H 0.131 0.869 26 H 0.106 0.894 27 H 0.126 0.874 28 H 0.253 0.747 29 H 0.095 0.905 30 H 0.081 0.919 31 H 0.174 0.826 32 H 0.173 0.827 33 H 0.263 0.737 34 H 0.244 0.756 35 H 0.007 0.993 36 H 0.006 0.994 37 H 0.078 0.922 38 H 0.121 0.879 39 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -17.804 13.311 12.929 25.716 hybrid contribution 0.366 -1.750 -0.173 1.796 sum -17.439 11.561 12.756 24.505 Atomic orbital electron populations 1.21928 0.88184 1.05976 1.06439 1.21617 0.92303 0.82693 0.74201 1.90711 1.72269 1.33332 1.52269 1.46125 1.06674 1.09347 1.74620 1.20005 0.80534 0.92311 1.02591 1.19738 1.04195 0.95738 0.93270 1.21117 0.96332 0.93225 0.98236 1.21113 1.03697 0.95423 0.96245 1.17890 0.96249 0.84111 0.94806 1.42495 1.48978 1.11913 1.28943 1.16283 0.79512 0.83161 0.82008 1.90881 1.60960 1.54948 1.43924 1.45329 1.51103 1.06764 1.33617 1.18462 0.86700 0.94190 0.84470 1.21566 1.30387 0.92962 1.14523 0.89629 1.26066 0.94759 1.04605 0.94191 1.70129 1.31391 1.38914 1.16395 0.85186 0.78500 0.77254 0.78137 1.18618 1.21231 1.18657 1.21144 1.01622 0.96755 0.97534 1.20988 0.97267 0.93141 0.98656 0.86891 0.89447 0.87354 0.74717 0.90499 0.91936 0.82581 0.82703 0.73733 0.75640 0.99344 0.99435 0.92223 0.87894 0.85246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.22 10.32 71.24 0.74 -0.49 16 2 C 0.50 8.44 7.94 87.66 0.70 9.14 16 3 O -0.60 -16.60 17.09 -3.01 -0.05 -16.65 16 4 N -0.72 -9.63 5.55 -466.79 -2.59 -12.22 16 5 C 0.17 2.87 5.80 85.63 0.50 3.37 16 6 C -0.13 -2.33 5.25 -19.84 -0.10 -2.43 16 7 C -0.07 -1.10 9.69 22.25 0.22 -0.89 16 8 C -0.14 -2.66 9.96 22.39 0.22 -2.44 16 9 C 0.17 4.41 6.28 38.15 0.24 4.65 16 10 N -0.67 -18.90 5.35 -317.18 -1.70 -20.59 16 11 C 0.69 27.79 8.30 179.05 1.49 29.28 16 12 O -0.63 -31.36 14.03 -3.98 -0.06 -31.42 16 13 N -0.71 -29.52 5.55 -482.30 -2.68 -32.20 16 14 C 0.28 15.41 5.43 85.63 0.46 15.88 16 15 C -0.56 -29.62 9.28 25.60 0.24 -29.39 16 16 H 0.09 4.06 7.60 -2.91 -0.02 4.04 16 17 C 0.00 0.20 5.46 84.66 0.46 0.66 16 18 N -0.93 -55.52 13.29 21.45 0.28 -55.23 16 19 Si 0.99 41.52 29.54 68.60 2.03 43.55 16 20 H -0.26 -10.39 7.11 99.48 0.71 -9.69 16 21 H -0.29 -12.06 7.11 99.48 0.71 -11.36 16 22 H -0.26 -10.42 7.11 99.48 0.71 -9.72 16 23 C -0.15 -4.51 8.66 22.39 0.19 -4.32 16 24 C -0.08 -1.91 9.69 22.25 0.22 -1.69 16 25 H 0.11 0.29 8.14 -2.39 -0.02 0.27 16 26 H 0.09 0.77 8.12 -2.39 -0.02 0.75 16 27 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 28 H 0.42 3.49 8.46 -92.71 -0.78 2.71 16 29 H 0.08 1.31 8.08 -2.39 -0.02 1.29 16 30 H 0.06 1.24 8.08 -2.39 -0.02 1.22 16 31 H 0.16 1.53 8.06 -2.91 -0.02 1.51 16 32 H 0.16 1.95 8.06 -2.91 -0.02 1.93 16 33 H 0.42 8.17 8.83 -92.71 -0.82 7.35 16 34 H 0.41 13.47 8.34 -92.71 -0.77 12.69 16 35 H -0.01 -0.70 8.14 -2.38 -0.02 -0.71 16 36 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 37 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 38 H 0.10 3.87 6.41 -2.91 -0.02 3.86 16 39 H 0.13 2.77 8.06 -2.91 -0.02 2.75 16 Total: -1.00 -80.19 342.74 -0.47 -80.67 By element: Atomic # 1 Polarization: 24.05 SS G_CDS: -1.27 Total: 22.77 kcal Atomic # 6 Polarization: 15.76 SS G_CDS: 5.56 Total: 21.33 kcal Atomic # 7 Polarization: -113.57 SS G_CDS: -6.68 Total: -120.25 kcal Atomic # 8 Polarization: -47.96 SS G_CDS: -0.11 Total: -48.07 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 2.03 Total: 43.55 kcal Total: -80.19 -0.47 -80.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488067133.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.238 kcal (2) G-P(sol) polarization free energy of solvation -80.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds