Wall clock time and date at job start Tue Mar 31 2020 06:49:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35324 * 117.00110 * 2 1 4 4 N 1.32463 * 118.99008 * 180.02562 * 3 2 1 5 5 C 1.32000 * 120.94586 * 179.97438 * 4 3 2 6 6 C 1.40295 * 118.95346 * 0.02562 * 5 4 3 7 7 C 1.47046 * 120.90733 * 180.02562 * 6 5 4 8 8 C 1.34947 * 119.99941 * 179.97438 * 7 6 5 9 9 C 1.46276 * 119.99901 * 179.97438 * 8 7 6 10 10 O 1.21712 * 120.00388 * 359.97438 * 9 8 7 11 11 N 1.34774 * 119.99642 * 179.97438 * 9 8 7 12 12 C 1.46506 * 120.00072 * 180.02562 * 11 9 8 13 13 C 1.52997 * 109.47289 * 180.02562 * 12 11 9 14 14 C 1.52996 * 109.47131 * 180.02562 * 13 12 11 15 15 C 1.50703 * 109.47130 * 179.97438 * 14 13 12 16 16 H 1.07994 * 120.00100 * 0.02562 * 15 14 13 17 17 C 1.37884 * 119.99709 * 179.97438 * 15 14 13 18 18 N 1.31511 * 119.99896 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99699 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47454 * 60.00119 * 19 17 15 21 21 H 1.48496 * 109.46966 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.46926 * 299.99910 * 19 17 15 23 23 C 1.40290 * 118.18115 * 0.25893 * 6 5 4 24 24 N 1.31998 * 118.95497 * 359.45789 * 23 6 5 25 25 H 1.09004 * 109.47125 * 299.99810 * 1 2 3 26 26 H 1.08998 * 109.47427 * 59.99665 * 1 2 3 27 27 H 1.09004 * 109.47296 * 180.02562 * 1 2 3 28 28 H 1.08004 * 120.52464 * 180.02562 * 5 4 3 29 29 H 1.08004 * 120.00309 * 359.97438 * 7 6 5 30 30 H 1.08000 * 119.99613 * 359.97438 * 8 7 6 31 31 H 0.97001 * 120.00676 * 359.97438 * 11 9 8 32 32 H 1.09001 * 109.47060 * 300.00359 * 12 11 9 33 33 H 1.09004 * 109.47073 * 59.99848 * 12 11 9 34 34 H 1.09001 * 109.46832 * 299.99854 * 13 12 11 35 35 H 1.08996 * 109.46952 * 59.99873 * 13 12 11 36 36 H 1.09001 * 109.46997 * 299.99574 * 14 13 12 37 37 H 1.09004 * 109.47298 * 59.99717 * 14 13 12 38 38 H 0.97007 * 119.99539 * 179.97438 * 18 17 15 39 39 H 1.08002 * 120.52192 * 179.73125 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0434 1.2057 0.0000 4 7 3.3672 1.2517 -0.0005 5 6 4.0063 2.4067 -0.0010 6 6 3.2610 3.5953 -0.0005 7 6 3.9286 4.9054 -0.0016 8 6 3.1937 6.0372 -0.0016 9 6 3.8578 7.3405 -0.0021 10 8 5.0733 7.4042 -0.0021 11 7 3.1238 8.4708 -0.0026 12 6 3.7889 9.7762 -0.0037 13 6 2.7352 10.8855 -0.0035 14 6 3.4298 12.2487 -0.0053 15 6 2.3919 13.3414 -0.0056 16 1 1.3419 13.0888 -0.0043 17 6 2.7829 14.6636 -0.0067 18 7 4.0616 14.9711 -0.0078 19 14 1.4964 16.0179 -0.0064 20 1 0.6489 15.8955 1.2068 21 1 2.1706 17.3410 -0.0083 22 1 0.6470 15.8940 -1.2182 23 6 1.8614 3.4997 0.0062 24 7 1.3025 2.3038 0.0007 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 5.0859 2.4362 -0.0019 29 1 5.0072 4.9620 -0.0025 30 1 2.1152 5.9807 -0.0012 31 1 2.1551 8.4202 -0.0030 32 1 4.4121 9.8673 0.8859 33 1 4.4114 9.8661 -0.8940 34 1 2.1118 10.7946 -0.8930 35 1 2.1131 10.7954 0.8870 36 1 4.0535 12.3399 0.8840 37 1 4.0517 12.3385 -0.8960 38 1 4.3366 15.9014 -0.0089 39 1 1.2507 4.3905 0.0112 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492681765.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:51 Heat of formation + Delta-G solvation = -44.102545 kcal Electronic energy + Delta-G solvation = -20879.725063 eV Core-core repulsion = 17401.116329 eV Total energy + Delta-G solvation = -3478.608734 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.31816 -40.67419 -39.48058 -37.00952 -35.56280 -35.16452 -34.94000 -33.05109 -31.12893 -28.86243 -28.25669 -26.21211 -25.56858 -24.60018 -22.61959 -22.29168 -20.66871 -19.90318 -19.24230 -18.49897 -17.94856 -17.49956 -16.81118 -16.63617 -16.52210 -16.31494 -15.80346 -15.48135 -15.32216 -15.04085 -14.81541 -14.64468 -14.19970 -13.75565 -13.50858 -13.26761 -12.92017 -12.71359 -12.60772 -12.53771 -12.39846 -12.34090 -12.13520 -11.64811 -11.58228 -11.38479 -11.24769 -10.92285 -10.53418 -10.33802 -10.10136 -9.36952 -8.18103 -6.29543 -0.76211 -0.03395 0.79303 1.42830 1.45684 1.51969 1.53527 2.26502 2.29361 2.44275 2.72442 2.90250 3.15569 3.38557 3.59134 3.61911 3.77031 4.15399 4.22726 4.24598 4.31245 4.37767 4.38742 4.57963 4.61507 4.70764 4.97094 5.01022 5.02318 5.18103 5.22645 5.30562 5.47158 5.55081 5.57101 5.72858 5.85827 6.01923 6.23639 6.64460 6.88078 6.89709 7.29548 7.39975 8.93603 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.036343 B = 0.001927 C = 0.001833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.249420 B =14529.905294 C =15269.101138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.307 6.307 3 C 0.486 3.514 4 N -0.552 5.552 5 C 0.212 3.788 6 C -0.213 4.213 7 C 0.001 3.999 8 C -0.202 4.202 9 C 0.535 3.465 10 O -0.596 6.596 11 N -0.709 5.709 12 C 0.129 3.871 13 C -0.102 4.102 14 C 0.022 3.978 15 C -0.542 4.542 16 H 0.067 0.933 17 C -0.004 4.004 18 N -0.935 5.935 19 Si 0.967 3.033 20 H -0.265 1.265 21 H -0.287 1.287 22 H -0.266 1.266 23 C 0.205 3.795 24 N -0.573 5.573 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.130 0.870 28 H 0.211 0.789 29 H 0.139 0.861 30 H 0.166 0.834 31 H 0.418 0.582 32 H 0.049 0.951 33 H 0.049 0.951 34 H 0.069 0.931 35 H 0.069 0.931 36 H -0.008 1.008 37 H -0.008 1.008 38 H 0.263 0.737 39 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.777 -29.004 0.035 30.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.208 6.208 3 C 0.186 3.814 4 N -0.277 5.277 5 C 0.046 3.954 6 C -0.218 4.218 7 C -0.020 4.020 8 C -0.222 4.222 9 C 0.326 3.674 10 O -0.480 6.480 11 N -0.360 5.360 12 C 0.004 3.996 13 C -0.140 4.140 14 C -0.016 4.016 15 C -0.579 4.579 16 H 0.085 0.915 17 C -0.202 4.202 18 N -0.575 5.575 19 Si 0.792 3.208 20 H -0.190 1.190 21 H -0.213 1.213 22 H -0.190 1.190 23 C 0.040 3.960 24 N -0.302 5.302 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.148 0.852 28 H 0.227 0.773 29 H 0.156 0.844 30 H 0.184 0.816 31 H 0.255 0.745 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.010 0.990 37 H 0.010 0.990 38 H 0.071 0.929 39 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -8.296 -30.064 0.033 31.188 hybrid contribution -0.247 1.956 -0.003 1.971 sum -8.543 -28.109 0.030 29.378 Atomic orbital electron populations 1.23296 0.73522 1.05552 1.03177 1.86050 1.25539 1.22891 1.86291 1.21157 0.86578 0.85453 0.88262 1.67614 1.07812 1.31595 1.20668 1.23994 1.02136 0.84304 0.84927 1.20551 0.95735 0.95310 1.10164 1.21925 1.00468 0.88844 0.90741 1.22894 1.02014 0.89971 1.07320 1.18893 0.86723 0.85945 0.75841 1.90810 1.15946 1.88581 1.52618 1.45872 1.11207 1.05091 1.73790 1.21227 0.95718 0.81948 1.00668 1.21592 0.97170 0.92984 1.02213 1.18962 0.95352 0.92243 0.95059 1.21665 0.93932 0.91856 1.50496 0.91458 1.26033 0.97450 1.01876 0.94838 1.70109 1.16828 1.18900 1.51632 0.85470 0.78726 0.77397 0.79256 1.19022 1.21281 1.19033 1.23921 0.92169 0.94875 0.85053 1.68125 1.41111 0.99379 1.21605 0.91527 0.91528 0.85178 0.77271 0.84357 0.81627 0.74463 0.93252 0.93251 0.91260 0.91252 0.98987 0.98986 0.92868 0.77489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.39 10.35 113.37 1.17 1.56 16 2 O -0.31 -5.65 10.55 -86.12 -0.91 -6.56 16 3 C 0.49 9.55 8.48 180.48 1.53 11.08 16 4 N -0.55 -10.84 10.44 -312.19 -3.26 -14.10 16 5 C 0.21 2.92 11.10 85.17 0.95 3.86 16 6 C -0.21 -2.70 5.90 -19.97 -0.12 -2.82 16 7 C 0.00 0.02 9.49 23.82 0.23 0.25 16 8 C -0.20 -3.03 9.43 23.60 0.22 -2.81 16 9 C 0.54 13.74 7.74 86.33 0.67 14.41 16 10 O -0.60 -21.00 16.23 -4.39 -0.07 -21.08 16 11 N -0.71 -17.59 5.55 -467.47 -2.60 -20.18 16 12 C 0.13 4.34 5.67 86.38 0.49 4.83 16 13 C -0.10 -3.76 5.27 30.59 0.16 -3.60 16 14 C 0.02 1.10 4.97 29.85 0.15 1.25 16 15 C -0.54 -29.78 9.11 25.60 0.23 -29.55 16 16 H 0.07 3.45 7.74 -2.91 -0.02 3.43 16 17 C 0.00 -0.24 5.46 84.66 0.46 0.22 16 18 N -0.93 -56.68 13.29 21.45 0.28 -56.40 16 19 Si 0.97 43.28 29.54 68.60 2.03 45.30 16 20 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 21 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 22 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 23 C 0.21 2.48 10.68 85.17 0.91 3.39 16 24 N -0.57 -9.42 9.18 -312.20 -2.87 -12.28 16 25 H 0.07 0.63 8.09 -2.38 -0.02 0.61 16 26 H 0.07 0.63 8.09 -2.39 -0.02 0.61 16 27 H 0.13 0.55 8.14 -2.38 -0.02 0.53 16 28 H 0.21 1.49 8.06 -2.91 -0.02 1.47 16 29 H 0.14 2.15 7.52 -2.91 -0.02 2.12 16 30 H 0.17 1.12 6.16 -2.91 -0.02 1.10 16 31 H 0.42 7.20 8.45 -92.71 -0.78 6.41 16 32 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 34 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 35 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 36 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 37 H -0.01 -0.46 8.14 -2.38 -0.02 -0.48 16 38 H 0.26 15.04 8.31 -92.70 -0.77 14.27 16 39 H 0.21 1.02 6.30 -2.91 -0.02 1.00 16 Total: -1.00 -77.53 345.45 -0.05 -77.58 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: 0.29 Total: 5.65 kcal Atomic # 6 Polarization: -4.98 SS G_CDS: 7.05 Total: 2.07 kcal Atomic # 7 Polarization: -94.52 SS G_CDS: -8.44 Total: -102.96 kcal Atomic # 8 Polarization: -26.66 SS G_CDS: -0.98 Total: -27.64 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.30 kcal Total: -77.53 -0.05 -77.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492681765.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.477 kcal (2) G-P(sol) polarization free energy of solvation -77.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds