Wall clock time and date at job start Tue Mar 31 2020 06:49:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35330 * 117.00099 * 2 1 4 4 N 1.32463 * 118.98895 * 179.97438 * 3 2 1 5 5 C 1.32006 * 120.94034 * 179.97438 * 4 3 2 6 6 C 1.40292 * 118.95614 * 0.02562 * 5 4 3 7 7 C 1.47050 * 120.90743 * 180.02562 * 6 5 4 8 8 C 1.34944 * 119.99821 * 46.12125 * 7 6 5 9 9 C 1.46279 * 120.00233 * 11.44777 * 8 7 6 10 10 O 1.21714 * 119.99697 * 6.72523 * 9 8 7 11 11 N 1.34774 * 119.99987 * 186.45751 * 9 8 7 12 12 C 1.46500 * 119.99887 * 180.27591 * 11 9 8 13 13 C 1.53002 * 109.47026 * 179.97438 * 12 11 9 14 14 C 1.52994 * 109.47080 * 179.97438 * 13 12 11 15 15 C 1.50702 * 109.47151 * 179.97438 * 14 13 12 16 16 H 1.08003 * 119.99819 * 0.02562 * 15 14 13 17 17 C 1.37876 * 119.99962 * 180.02562 * 15 14 13 18 18 N 1.31511 * 120.00006 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99947 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.46989 * 59.99844 * 19 17 15 21 21 H 1.48495 * 109.46956 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.46937 * 300.00094 * 19 17 15 23 23 C 1.40293 * 118.17974 * 0.26649 * 6 5 4 24 24 N 1.32003 * 118.95742 * 359.45506 * 23 6 5 25 25 H 1.08999 * 109.47087 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46850 * 300.00264 * 1 2 3 27 27 H 1.09005 * 109.46947 * 60.00002 * 1 2 3 28 28 H 1.07996 * 120.52114 * 179.97438 * 5 4 3 29 29 H 1.07992 * 120.00067 * 226.11839 * 7 6 5 30 30 H 1.07999 * 119.99920 * 191.43873 * 8 7 6 31 31 H 0.97001 * 120.00114 * 0.26679 * 11 9 8 32 32 H 1.09000 * 109.46505 * 299.99305 * 12 11 9 33 33 H 1.08993 * 109.47253 * 59.99429 * 12 11 9 34 34 H 1.08996 * 109.46841 * 299.99875 * 13 12 11 35 35 H 1.09002 * 109.46768 * 59.99549 * 13 12 11 36 36 H 1.08996 * 109.47626 * 299.99939 * 14 13 12 37 37 H 1.09002 * 109.47244 * 60.00385 * 14 13 12 38 38 H 0.97005 * 119.99714 * 179.97438 * 18 17 15 39 39 H 1.07999 * 120.51923 * 179.70472 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0434 1.2058 0.0000 4 7 3.3673 1.2517 0.0005 5 6 4.0063 2.4068 0.0000 6 6 3.2609 3.5954 -0.0005 7 6 3.9286 4.9056 -0.0016 8 6 4.9563 5.1384 -0.8445 9 6 5.2469 4.1931 -1.9223 10 8 4.4915 3.2629 -2.1360 11 7 6.3482 4.3551 -2.6821 12 6 6.6360 3.4118 -3.7654 13 6 7.9333 3.8203 -4.4662 14 6 8.2342 2.8349 -5.5971 15 6 9.5117 3.2376 -6.2878 16 1 10.0548 4.1091 -5.9532 17 6 9.9870 2.4935 -7.3467 18 7 9.3253 1.4326 -7.7544 19 14 11.5709 2.9923 -8.2024 20 1 12.6878 2.9780 -7.2238 21 1 11.8622 2.0366 -9.3009 22 1 11.4213 4.3594 -8.7629 23 6 1.8613 3.4997 0.0053 24 7 1.3024 2.3038 -0.0001 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 5.0858 2.4364 0.0009 29 1 3.5963 5.6815 0.6721 30 1 5.5643 6.0228 -0.7235 31 1 6.9502 5.0964 -2.5118 32 1 6.7454 2.4084 -3.3539 33 1 5.8164 3.4225 -4.4839 34 1 7.8235 4.8237 -4.8777 35 1 8.7530 3.8099 -3.7479 36 1 8.3441 1.8317 -5.1853 37 1 7.4145 2.8449 -6.3156 38 1 9.6596 0.9094 -8.4997 39 1 1.2507 4.3905 0.0099 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492681766.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:54 Heat of formation + Delta-G solvation = -6.379628 kcal Electronic energy + Delta-G solvation = -21869.282922 eV Core-core repulsion = 18392.309976 eV Total energy + Delta-G solvation = -3476.972945 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.29746 -39.69544 -38.36732 -35.65985 -34.23352 -33.89565 -33.34515 -31.38538 -30.05568 -27.79710 -26.85622 -24.66617 -24.54816 -23.24537 -21.71886 -20.71967 -19.41027 -18.94805 -18.07889 -17.29683 -16.49871 -16.45106 -15.70307 -15.47423 -15.05234 -14.77485 -14.54976 -14.48741 -14.10142 -13.83101 -13.65178 -13.47145 -13.09878 -12.29042 -12.18980 -11.86150 -11.77646 -11.59675 -11.30381 -10.97284 -10.88793 -10.75255 -10.63202 -10.26614 -10.00125 -9.88480 -9.45071 -9.18434 -9.13906 -8.80454 -8.43048 -8.37975 -6.02427 -4.05965 0.37750 1.06803 1.50356 2.48437 3.26034 3.31351 3.36088 3.37189 3.41773 3.71741 3.91895 4.38719 4.43399 4.47734 4.64370 4.69926 4.97041 5.02183 5.05377 5.15524 5.33168 5.34371 5.58609 5.63674 5.74350 5.81081 5.91017 6.08626 6.13400 6.42604 6.56637 6.62925 6.79491 6.97622 7.03977 7.61937 7.65260 7.74466 7.95842 8.00851 8.30816 8.37228 9.00521 9.58283 11.08811 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.023313 B = 0.002639 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.745014 B =10605.540162 C =11569.628549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 O -0.291 6.291 3 C 0.502 3.498 4 N -0.525 5.525 5 C 0.262 3.738 6 C -0.209 4.209 7 C -0.018 4.018 8 C -0.201 4.201 9 C 0.530 3.470 10 O -0.544 6.544 11 N -0.716 5.716 12 C 0.115 3.885 13 C -0.120 4.120 14 C 0.024 3.976 15 C -0.524 4.524 16 H 0.055 0.945 17 C 0.057 3.943 18 N -0.894 5.894 19 Si 0.894 3.106 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 C 0.196 3.804 24 N -0.576 5.576 25 H 0.102 0.898 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.166 0.834 29 H 0.141 0.859 30 H 0.138 0.862 31 H 0.400 0.600 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.054 0.946 35 H 0.055 0.945 36 H 0.019 0.981 37 H 0.018 0.982 38 H 0.262 0.738 39 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.284 7.622 19.808 26.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.192 6.192 3 C 0.201 3.799 4 N -0.250 5.250 5 C 0.094 3.906 6 C -0.214 4.214 7 C -0.039 4.039 8 C -0.222 4.222 9 C 0.318 3.682 10 O -0.423 6.423 11 N -0.365 5.365 12 C -0.007 4.007 13 C -0.158 4.158 14 C -0.014 4.014 15 C -0.562 4.562 16 H 0.073 0.927 17 C -0.145 4.145 18 N -0.532 5.532 19 Si 0.721 3.279 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.203 1.203 23 C 0.032 3.968 24 N -0.305 5.305 25 H 0.120 0.880 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.183 0.817 29 H 0.159 0.841 30 H 0.156 0.844 31 H 0.233 0.767 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.037 0.963 37 H 0.037 0.963 38 H 0.072 0.928 39 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -16.242 5.536 19.469 25.952 hybrid contribution 1.448 1.606 -0.704 2.274 sum -14.794 7.142 18.764 24.940 Atomic orbital electron populations 1.22969 0.75864 1.03418 1.02746 1.86058 1.23241 1.23062 1.86804 1.20769 0.86272 0.84604 0.88293 1.67515 1.07259 1.30291 1.19932 1.23059 0.99818 0.84880 0.82820 1.20415 0.95699 0.95631 1.09683 1.21977 0.92503 0.93520 0.95889 1.23152 1.00414 1.01659 0.97015 1.18483 0.81406 0.85308 0.82970 1.90861 1.47797 1.32764 1.70896 1.46209 1.24833 1.31325 1.34120 1.21671 0.98987 0.92251 0.87813 1.21886 0.93630 1.01179 0.99153 1.19021 0.96789 0.93798 0.91760 1.21159 1.08022 1.11722 1.15322 0.92695 1.25034 0.97326 0.94999 0.97093 1.69956 1.39164 1.16879 1.27236 0.86637 0.83734 0.78306 0.79187 1.20218 1.21257 1.20251 1.22977 0.91236 0.94231 0.88350 1.67925 1.41064 0.99185 1.22335 0.87985 0.92027 0.91887 0.81699 0.84133 0.84448 0.76655 0.91584 0.91767 0.92745 0.92675 0.96259 0.96339 0.92834 0.81323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.41 10.35 101.05 1.05 1.46 16 2 O -0.29 -4.02 10.55 -17.68 -0.19 -4.21 16 3 C 0.50 7.50 8.48 -91.00 -0.77 6.73 16 4 N -0.53 -8.37 10.44 -14.33 -0.15 -8.52 16 5 C 0.26 3.53 8.01 -16.70 -0.13 3.40 16 6 C -0.21 -2.29 4.43 -104.78 -0.46 -2.75 16 7 C -0.02 -0.13 9.84 -37.18 -0.37 -0.50 16 8 C -0.20 -1.71 9.94 -37.52 -0.37 -2.08 16 9 C 0.53 7.00 6.92 -13.03 -0.09 6.91 16 10 O -0.54 -9.32 12.37 5.18 0.06 -9.26 16 11 N -0.72 -9.43 5.55 -61.75 -0.34 -9.77 16 12 C 0.12 1.98 5.67 -4.04 -0.02 1.96 16 13 C -0.12 -2.31 5.27 -26.73 -0.14 -2.45 16 14 C 0.02 0.61 4.97 -27.89 -0.14 0.47 16 15 C -0.52 -14.61 9.11 -34.44 -0.31 -14.92 16 16 H 0.05 1.46 7.74 -52.48 -0.41 1.06 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 18 N -0.89 -26.95 13.29 55.43 0.74 -26.21 16 19 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 C 0.20 2.07 11.10 -16.71 -0.19 1.89 16 24 N -0.58 -7.43 9.18 -14.33 -0.13 -7.56 16 25 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.06 0.49 8.09 -51.93 -0.42 0.07 16 27 H 0.06 0.57 8.09 -51.93 -0.42 0.15 16 28 H 0.17 2.05 7.38 -52.49 -0.39 1.66 16 29 H 0.14 0.53 8.06 -52.49 -0.42 0.11 16 30 H 0.14 0.72 8.06 -52.49 -0.42 0.29 16 31 H 0.40 4.06 8.45 -40.82 -0.34 3.71 16 32 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 39 H 0.17 1.12 8.06 -52.49 -0.42 0.69 16 LS Contribution 341.02 15.07 5.14 5.14 Total: -1.00 -35.68 341.02 -7.29 -42.96 By element: Atomic # 1 Polarization: 4.68 SS G_CDS: -5.34 Total: -0.66 kcal Atomic # 6 Polarization: 3.69 SS G_CDS: -2.05 Total: 1.64 kcal Atomic # 7 Polarization: -52.18 SS G_CDS: 0.11 Total: -52.06 kcal Atomic # 8 Polarization: -13.35 SS G_CDS: -0.12 Total: -13.47 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -35.68 -7.29 -42.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492681766.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.584 kcal (2) G-P(sol) polarization free energy of solvation -35.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds