Wall clock time and date at job start Tue Mar 31 2020 06:49:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35330 * 117.00099 * 2 1 4 4 N 1.32463 * 118.98895 * 179.97438 * 3 2 1 5 5 C 1.32006 * 120.94034 * 179.97438 * 4 3 2 6 6 C 1.40292 * 118.95614 * 0.02562 * 5 4 3 7 7 C 1.47050 * 120.90743 * 180.02562 * 6 5 4 8 8 C 1.34944 * 119.99821 * 46.12125 * 7 6 5 9 9 C 1.46279 * 120.00233 * 11.44777 * 8 7 6 10 10 O 1.21714 * 119.99697 * 6.72523 * 9 8 7 11 11 N 1.34774 * 119.99987 * 186.45751 * 9 8 7 12 12 C 1.46500 * 119.99887 * 180.27591 * 11 9 8 13 13 C 1.53002 * 109.47026 * 179.97438 * 12 11 9 14 14 C 1.52994 * 109.47080 * 179.97438 * 13 12 11 15 15 C 1.50702 * 109.47151 * 179.97438 * 14 13 12 16 16 H 1.08003 * 119.99819 * 0.02562 * 15 14 13 17 17 C 1.37876 * 119.99962 * 180.02562 * 15 14 13 18 18 N 1.31511 * 120.00006 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99947 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.46989 * 59.99844 * 19 17 15 21 21 H 1.48495 * 109.46956 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.46937 * 300.00094 * 19 17 15 23 23 C 1.40293 * 118.17974 * 0.26649 * 6 5 4 24 24 N 1.32003 * 118.95742 * 359.45506 * 23 6 5 25 25 H 1.08999 * 109.47087 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46850 * 300.00264 * 1 2 3 27 27 H 1.09005 * 109.46947 * 60.00002 * 1 2 3 28 28 H 1.07996 * 120.52114 * 179.97438 * 5 4 3 29 29 H 1.07992 * 120.00067 * 226.11839 * 7 6 5 30 30 H 1.07999 * 119.99920 * 191.43873 * 8 7 6 31 31 H 0.97001 * 120.00114 * 0.26679 * 11 9 8 32 32 H 1.09000 * 109.46505 * 299.99305 * 12 11 9 33 33 H 1.08993 * 109.47253 * 59.99429 * 12 11 9 34 34 H 1.08996 * 109.46841 * 299.99875 * 13 12 11 35 35 H 1.09002 * 109.46768 * 59.99549 * 13 12 11 36 36 H 1.08996 * 109.47626 * 299.99939 * 14 13 12 37 37 H 1.09002 * 109.47244 * 60.00385 * 14 13 12 38 38 H 0.97005 * 119.99714 * 179.97438 * 18 17 15 39 39 H 1.07999 * 120.51923 * 179.70472 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0434 1.2058 0.0000 4 7 3.3673 1.2517 0.0005 5 6 4.0063 2.4068 0.0000 6 6 3.2609 3.5954 -0.0005 7 6 3.9286 4.9056 -0.0016 8 6 4.9563 5.1384 -0.8445 9 6 5.2469 4.1931 -1.9223 10 8 4.4915 3.2629 -2.1360 11 7 6.3482 4.3551 -2.6821 12 6 6.6360 3.4118 -3.7654 13 6 7.9333 3.8203 -4.4662 14 6 8.2342 2.8349 -5.5971 15 6 9.5117 3.2376 -6.2878 16 1 10.0548 4.1091 -5.9532 17 6 9.9870 2.4935 -7.3467 18 7 9.3253 1.4326 -7.7544 19 14 11.5709 2.9923 -8.2024 20 1 12.6878 2.9780 -7.2238 21 1 11.8622 2.0366 -9.3009 22 1 11.4213 4.3594 -8.7629 23 6 1.8613 3.4997 0.0053 24 7 1.3024 2.3038 -0.0001 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 5.0858 2.4364 0.0009 29 1 3.5963 5.6815 0.6721 30 1 5.5643 6.0228 -0.7235 31 1 6.9502 5.0964 -2.5118 32 1 6.7454 2.4084 -3.3539 33 1 5.8164 3.4225 -4.4839 34 1 7.8235 4.8237 -4.8777 35 1 8.7530 3.8099 -3.7479 36 1 8.3441 1.8317 -5.1853 37 1 7.4145 2.8449 -6.3156 38 1 9.6596 0.9094 -8.4997 39 1 1.2507 4.3905 0.0099 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492681766.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:53 Heat of formation + Delta-G solvation = -35.209096 kcal Electronic energy + Delta-G solvation = -21870.533061 eV Core-core repulsion = 18392.309976 eV Total energy + Delta-G solvation = -3478.223085 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.22840 -40.75214 -39.30901 -37.07323 -35.29505 -35.04077 -34.81847 -33.10254 -31.01068 -28.84686 -28.31919 -25.80831 -25.55736 -24.66851 -22.85489 -22.32380 -20.47332 -19.86251 -19.00272 -18.54713 -18.20881 -17.41354 -16.92782 -16.70704 -16.44634 -16.15469 -15.63684 -15.46823 -15.22731 -14.94777 -14.52355 -14.35518 -14.24970 -13.95814 -13.74997 -13.51989 -12.91592 -12.72146 -12.57313 -12.43789 -12.40121 -12.19947 -11.93870 -11.67564 -11.56484 -11.26555 -11.04681 -10.88922 -10.56437 -10.16778 -9.99429 -9.28074 -8.20597 -6.32822 -0.46018 0.16248 0.68925 1.40890 1.44323 1.52216 1.61676 2.29893 2.35471 2.43794 2.77814 3.07192 3.13053 3.60647 3.65182 3.82505 3.95523 4.11252 4.19599 4.21765 4.35800 4.36965 4.53374 4.61739 4.68095 4.77749 4.92386 4.98570 5.10635 5.15337 5.18497 5.42261 5.45440 5.53222 5.68355 5.70903 5.82414 6.14630 6.20269 6.66291 6.85120 7.05017 7.32262 7.37241 8.91465 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.023313 B = 0.002639 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.745014 B =10605.540162 C =11569.628549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.316 6.316 3 C 0.478 3.522 4 N -0.567 5.567 5 C 0.239 3.761 6 C -0.207 4.207 7 C 0.002 3.998 8 C -0.202 4.202 9 C 0.523 3.477 10 O -0.590 6.590 11 N -0.707 5.707 12 C 0.132 3.868 13 C -0.100 4.100 14 C 0.023 3.977 15 C -0.542 4.542 16 H 0.069 0.931 17 C -0.005 4.005 18 N -0.937 5.937 19 Si 0.969 3.031 20 H -0.264 1.264 21 H -0.287 1.287 22 H -0.264 1.264 23 C 0.192 3.808 24 N -0.578 5.578 25 H 0.129 0.871 26 H 0.070 0.930 27 H 0.059 0.941 28 H 0.164 0.836 29 H 0.195 0.805 30 H 0.182 0.818 31 H 0.418 0.582 32 H 0.044 0.956 33 H 0.043 0.957 34 H 0.069 0.931 35 H 0.070 0.930 36 H -0.011 1.011 37 H -0.012 1.012 38 H 0.263 0.737 39 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.980 11.167 21.215 28.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.218 6.218 3 C 0.177 3.823 4 N -0.293 5.293 5 C 0.073 3.927 6 C -0.212 4.212 7 C -0.018 4.018 8 C -0.222 4.222 9 C 0.313 3.687 10 O -0.473 6.473 11 N -0.358 5.358 12 C 0.007 3.993 13 C -0.138 4.138 14 C -0.015 4.015 15 C -0.580 4.580 16 H 0.087 0.913 17 C -0.203 4.203 18 N -0.577 5.577 19 Si 0.793 3.207 20 H -0.189 1.189 21 H -0.213 1.213 22 H -0.189 1.189 23 C 0.028 3.972 24 N -0.308 5.308 25 H 0.147 0.853 26 H 0.089 0.911 27 H 0.077 0.923 28 H 0.181 0.819 29 H 0.212 0.788 30 H 0.199 0.801 31 H 0.255 0.745 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.007 0.993 37 H 0.007 0.993 38 H 0.072 0.928 39 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -15.920 9.135 20.907 27.821 hybrid contribution 1.273 0.476 -1.121 1.762 sum -14.647 9.611 19.786 26.427 Atomic orbital electron populations 1.23230 0.73761 1.05286 1.02944 1.86015 1.25450 1.23342 1.86947 1.20965 0.86327 0.85462 0.89544 1.67393 1.08383 1.32112 1.21443 1.23213 1.00079 0.85621 0.83760 1.20796 0.96054 0.96449 1.07853 1.22450 0.90897 0.92546 0.95911 1.23236 1.01478 1.01812 0.95704 1.19394 0.80318 0.85367 0.83572 1.90866 1.49239 1.34965 1.72205 1.45963 1.25684 1.31085 1.33048 1.21138 0.97275 0.92359 0.88502 1.21581 0.94959 0.99880 0.97405 1.18944 0.95368 0.94055 0.93121 1.21664 1.08744 1.12039 1.15509 0.91300 1.26070 1.01263 0.94873 0.98074 1.70119 1.41310 1.18337 1.27977 0.85441 0.79050 0.78260 0.77939 1.18883 1.21274 1.18862 1.23802 0.91761 0.94751 0.86848 1.68000 1.40895 0.99552 1.22329 0.85344 0.91119 0.92262 0.81939 0.78790 0.80063 0.74479 0.93754 0.93897 0.91198 0.91161 0.99307 0.99321 0.92823 0.76864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.77 10.35 113.37 1.17 1.94 16 2 O -0.32 -9.19 10.55 -86.18 -0.91 -10.10 16 3 C 0.48 14.86 8.48 180.48 1.53 16.39 16 4 N -0.57 -19.10 10.44 -312.19 -3.26 -22.36 16 5 C 0.24 6.60 8.01 85.17 0.68 7.28 16 6 C -0.21 -4.13 4.43 -19.97 -0.09 -4.22 16 7 C 0.00 0.03 9.84 23.83 0.23 0.26 16 8 C -0.20 -2.60 9.94 23.60 0.23 -2.37 16 9 C 0.52 13.08 6.92 86.33 0.60 13.67 16 10 O -0.59 -20.51 12.37 -4.39 -0.05 -20.57 16 11 N -0.71 -17.69 5.55 -467.49 -2.60 -20.28 16 12 C 0.13 4.63 5.67 86.38 0.49 5.12 16 13 C -0.10 -3.83 5.27 30.59 0.16 -3.67 16 14 C 0.02 1.20 4.97 29.85 0.15 1.35 16 15 C -0.54 -30.36 9.11 25.60 0.23 -30.13 16 16 H 0.07 3.58 7.74 -2.91 -0.02 3.56 16 17 C -0.01 -0.30 5.46 84.65 0.46 0.16 16 18 N -0.94 -58.12 13.29 21.45 0.28 -57.83 16 19 Si 0.97 43.92 29.54 68.60 2.03 45.94 16 20 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 21 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 22 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 23 C 0.19 3.64 11.10 85.17 0.95 4.59 16 24 N -0.58 -14.68 9.18 -312.19 -2.87 -17.55 16 25 H 0.13 1.54 8.14 -2.39 -0.02 1.52 16 26 H 0.07 1.12 8.09 -2.39 -0.02 1.10 16 27 H 0.06 1.09 8.09 -2.38 -0.02 1.07 16 28 H 0.16 4.24 7.38 -2.91 -0.02 4.21 16 29 H 0.20 0.10 8.06 -2.91 -0.02 0.07 16 30 H 0.18 0.78 8.06 -2.91 -0.02 0.76 16 31 H 0.42 7.29 8.45 -92.71 -0.78 6.50 16 32 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 35 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 36 H -0.01 -0.67 8.14 -2.39 -0.02 -0.68 16 37 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 38 H 0.26 15.38 8.31 -92.70 -0.77 14.60 16 39 H 0.21 1.90 8.06 -2.91 -0.02 1.88 16 Total: -1.00 -83.37 341.02 -0.29 -83.67 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: 0.28 Total: 8.69 kcal Atomic # 6 Polarization: 3.58 SS G_CDS: 6.80 Total: 10.39 kcal Atomic # 7 Polarization: -109.59 SS G_CDS: -8.44 Total: -118.02 kcal Atomic # 8 Polarization: -29.70 SS G_CDS: -0.96 Total: -30.67 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.94 kcal Total: -83.37 -0.29 -83.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492681766.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.457 kcal (2) G-P(sol) polarization free energy of solvation -83.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds