Wall clock time and date at job start Tue Mar 31 2020 06:06:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46501 * 109.47285 * 2 1 4 4 C 1.46502 * 120.00060 * 90.00273 * 3 2 1 5 5 C 1.50704 * 109.47077 * 89.99894 * 4 3 2 6 6 H 1.07999 * 120.00040 * 0.02562 * 5 4 3 7 7 C 1.37876 * 119.99700 * 180.02562 * 5 4 3 8 8 N 1.31516 * 119.99956 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 119.99799 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.46897 * 60.00054 * 9 7 5 11 11 H 1.48510 * 109.47027 * 179.97438 * 9 7 5 12 12 H 1.48493 * 109.47208 * 299.99911 * 9 7 5 13 13 C 1.34780 * 119.99969 * 269.99909 * 3 2 1 14 14 O 1.21714 * 119.99914 * 179.97438 * 13 3 2 15 15 C 1.46270 * 120.00198 * 0.02562 * 13 3 2 16 16 C 1.34939 * 120.00329 * 186.76728 * 15 13 3 17 17 C 1.47049 * 119.99595 * 11.45051 * 16 15 13 18 18 C 1.40292 * 120.91036 * 225.85193 * 17 16 15 19 19 N 1.31999 * 118.95589 * 179.71883 * 18 17 16 20 20 C 1.32462 * 120.94191 * 0.56696 * 19 18 17 21 21 O 1.35328 * 118.98736 * 179.72550 * 20 19 18 22 22 C 1.42904 * 117.00184 * 359.97438 * 21 20 19 23 23 N 1.32457 * 122.02395 * 359.70616 * 20 19 18 24 24 C 1.32004 * 120.94189 * 359.97438 * 23 20 19 25 25 H 1.08992 * 109.47142 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46913 * 300.00133 * 1 2 3 27 27 H 1.09003 * 109.47018 * 59.99290 * 1 2 3 28 28 H 1.08999 * 109.47277 * 240.00254 * 2 1 3 29 29 H 1.09001 * 109.47379 * 120.00317 * 2 1 3 30 30 H 1.08997 * 109.47150 * 210.00040 * 4 3 2 31 31 H 1.09003 * 109.46626 * 330.00253 * 4 3 2 32 32 H 0.96997 * 119.99782 * 180.02562 * 8 7 5 33 33 H 1.08003 * 119.99835 * 6.77117 * 15 13 3 34 34 H 1.08002 * 120.00404 * 191.44712 * 16 15 13 35 35 H 1.08004 * 120.51845 * 359.97438 * 18 17 16 36 36 H 1.08998 * 109.46951 * 299.99937 * 22 21 20 37 37 H 1.09001 * 109.47043 * 60.00089 * 22 21 20 38 38 H 1.09003 * 109.47152 * 180.02562 * 22 21 20 39 39 H 1.08000 * 120.52157 * 179.97438 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2626 2.0718 1.2687 5 6 3.6859 1.8349 1.7037 6 1 4.3429 1.2308 1.0957 7 6 4.1492 2.3895 2.8779 8 7 3.3492 3.1256 3.6180 9 14 5.9132 2.0954 3.4175 10 1 6.8411 2.6187 2.3829 11 1 6.1608 2.7955 4.7035 12 1 6.1402 0.6386 3.5947 13 6 2.2430 2.0166 -1.1672 14 8 2.6483 3.1642 -1.1672 15 6 1.9987 1.3273 -2.4340 16 6 2.3511 1.9107 -3.5986 17 6 3.2000 3.1114 -3.5920 18 6 2.8848 4.2213 -4.3900 19 7 3.6707 5.2811 -4.3499 20 6 4.7484 5.3011 -3.5799 21 8 5.5294 6.4062 -3.5735 22 6 5.1271 7.4899 -4.4137 23 7 5.0848 4.2728 -2.8157 24 6 4.3504 3.1762 -2.7915 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5140 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 2.0956 3.1410 1.1384 31 1 1.5818 1.6876 2.0284 32 1 3.6753 3.5161 4.4439 33 1 1.5362 0.3513 -2.4372 34 1 2.0096 1.4959 -4.5355 35 1 2.0106 4.2103 -5.0241 36 1 5.1014 7.1554 -5.4508 37 1 4.1351 7.8306 -4.1171 38 1 5.8382 8.3101 -4.3143 39 1 4.6313 2.3417 -2.1662 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492687858.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:33 Heat of formation + Delta-G solvation = 12.853068 kcal Electronic energy + Delta-G solvation = -23233.758832 eV Core-core repulsion = 19757.619879 eV Total energy + Delta-G solvation = -3476.138953 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.92677 -39.26359 -38.05524 -35.51089 -33.90573 -33.52269 -32.74569 -30.13049 -29.87810 -27.63869 -27.01015 -24.35340 -24.26592 -23.04837 -22.86282 -20.73913 -18.63768 -18.05661 -17.73967 -16.90289 -16.38802 -16.15539 -15.58024 -15.07132 -14.44509 -14.41440 -14.28689 -13.89404 -13.68178 -13.39654 -13.22056 -13.11784 -12.74660 -12.28243 -12.00591 -11.92985 -11.67682 -11.28944 -11.19569 -10.93164 -10.91877 -10.77611 -10.55843 -10.48819 -10.10480 -9.87310 -9.63953 -9.17422 -8.74771 -8.41288 -8.00081 -7.67726 -6.02880 -4.07918 0.78969 1.43976 1.92817 2.79986 3.34545 3.39497 3.43621 3.89622 3.94134 4.08724 4.24897 4.47722 4.76545 4.86082 4.98926 5.01899 5.22429 5.26783 5.27815 5.31976 5.38351 5.50075 5.59607 5.60647 5.72144 5.97361 6.00055 6.16076 6.21758 6.29049 6.46550 6.48170 6.98722 7.07602 7.37301 7.43858 7.51993 7.92725 8.23095 8.37518 8.38665 8.89029 9.05397 9.57530 11.05198 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.012376 B = 0.005684 C = 0.004205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2261.821444 B = 4924.568014 C = 6656.727982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.105 3.895 3 N -0.587 5.587 4 C 0.247 3.753 5 C -0.526 4.526 6 H 0.057 0.943 7 C 0.063 3.937 8 N -0.895 5.895 9 Si 0.896 3.104 10 H -0.274 1.274 11 H -0.287 1.287 12 H -0.277 1.277 13 C 0.526 3.474 14 O -0.539 6.539 15 C -0.193 4.193 16 C -0.036 4.036 17 C -0.200 4.200 18 C 0.189 3.811 19 N -0.579 5.579 20 C 0.498 3.502 21 O -0.292 6.292 22 C 0.047 3.953 23 N -0.522 5.522 24 C 0.268 3.732 25 H 0.059 0.941 26 H 0.060 0.940 27 H 0.052 0.948 28 H 0.067 0.933 29 H 0.083 0.917 30 H 0.043 0.957 31 H 0.031 0.969 32 H 0.264 0.736 33 H 0.134 0.866 34 H 0.136 0.864 35 H 0.167 0.833 36 H 0.059 0.941 37 H 0.061 0.939 38 H 0.099 0.901 39 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.001 -3.222 -16.876 17.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.019 4.019 3 N -0.316 5.316 4 C 0.127 3.873 5 C -0.565 4.565 6 H 0.075 0.925 7 C -0.139 4.139 8 N -0.534 5.534 9 Si 0.724 3.276 10 H -0.199 1.199 11 H -0.212 1.212 12 H -0.203 1.203 13 C 0.315 3.685 14 O -0.419 6.419 15 C -0.214 4.214 16 C -0.057 4.057 17 C -0.205 4.205 18 C 0.025 3.975 19 N -0.309 5.309 20 C 0.196 3.804 21 O -0.193 6.193 22 C -0.049 4.049 23 N -0.247 5.247 24 C 0.101 3.899 25 H 0.078 0.922 26 H 0.079 0.921 27 H 0.071 0.929 28 H 0.085 0.915 29 H 0.101 0.899 30 H 0.061 0.939 31 H 0.049 0.951 32 H 0.073 0.927 33 H 0.151 0.849 34 H 0.153 0.847 35 H 0.184 0.816 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.117 0.883 39 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -2.946 -1.514 -16.504 16.833 hybrid contribution 0.043 -0.866 0.465 0.984 sum -2.903 -2.380 -16.039 16.473 Atomic orbital electron populations 1.22231 0.96732 1.01413 1.02425 1.21467 0.93537 0.84182 1.02760 1.48269 1.62403 1.13080 1.07892 1.19278 0.96342 0.93615 0.78016 1.21342 0.96732 1.32103 1.06287 0.92501 1.24917 0.97807 0.94824 0.96386 1.69920 1.35763 1.33318 1.14367 0.86584 0.84920 0.78190 0.77947 1.19925 1.21211 1.20258 1.18285 0.79256 0.86711 0.84295 1.90819 1.46215 1.17895 1.86953 1.23429 1.04139 1.00578 0.93231 1.21891 0.93671 0.92460 0.97663 1.20400 0.99561 0.97922 1.02663 1.22890 0.95353 0.86143 0.93107 1.67864 1.07189 1.29911 1.25912 1.20736 0.85415 0.86904 0.87326 1.86048 1.47511 1.22307 1.63478 1.22916 1.01643 0.86497 0.93822 1.67530 1.34997 1.00340 1.21837 1.23127 0.86664 0.92884 0.87262 0.92169 0.92106 0.92929 0.91456 0.89884 0.93939 0.95104 0.92678 0.84852 0.84658 0.81635 0.92203 0.92027 0.88257 0.81509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.15 10.24 37.15 0.38 -1.77 16 2 C 0.10 1.58 5.79 -4.04 -0.02 1.56 16 3 N -0.59 -11.89 2.46 -176.76 -0.43 -12.32 16 4 C 0.25 6.36 5.16 -5.19 -0.03 6.33 16 5 C -0.53 -14.78 9.39 -34.44 -0.32 -15.10 16 6 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 7 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 8 N -0.89 -26.87 13.29 55.43 0.74 -26.13 16 9 Si 0.90 22.18 29.54 -169.99 -5.02 17.16 16 10 H -0.27 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 13 C 0.53 10.31 6.78 -13.03 -0.09 10.22 16 14 O -0.54 -12.83 11.95 5.18 0.06 -12.77 16 15 C -0.19 -2.62 9.07 -37.53 -0.34 -2.96 16 16 C -0.04 -0.42 9.84 -37.18 -0.37 -0.79 16 17 C -0.20 -3.05 4.43 -104.78 -0.46 -3.52 16 18 C 0.19 2.68 11.10 -16.71 -0.19 2.49 16 19 N -0.58 -9.46 9.18 -14.33 -0.13 -9.60 16 20 C 0.50 9.31 8.48 -91.01 -0.77 8.54 16 21 O -0.29 -5.03 10.55 -17.68 -0.19 -5.21 16 22 C 0.05 0.55 10.35 101.05 1.05 1.60 16 23 N -0.52 -10.73 10.44 -14.33 -0.15 -10.88 16 24 C 0.27 4.97 8.02 -16.71 -0.13 4.84 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.07 0.81 6.19 -51.93 -0.32 0.49 16 29 H 0.08 1.33 8.07 -51.93 -0.42 0.91 16 30 H 0.04 1.26 7.42 -51.93 -0.39 0.87 16 31 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 32 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 33 H 0.13 1.38 6.33 -52.48 -0.33 1.04 16 34 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 35 H 0.17 1.64 8.06 -52.48 -0.42 1.22 16 36 H 0.06 0.63 8.09 -51.93 -0.42 0.21 16 37 H 0.06 0.73 8.09 -51.93 -0.42 0.31 16 38 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.17 3.11 7.38 -52.49 -0.39 2.73 16 LS Contribution 337.27 15.07 5.08 5.08 Total: -1.00 -35.76 337.27 -6.62 -42.39 By element: Atomic # 1 Polarization: 4.32 SS G_CDS: -5.19 Total: -0.87 kcal Atomic # 6 Polarization: 14.54 SS G_CDS: -1.39 Total: 13.15 kcal Atomic # 7 Polarization: -58.95 SS G_CDS: 0.02 Total: -58.93 kcal Atomic # 8 Polarization: -17.85 SS G_CDS: -0.12 Total: -17.98 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -35.76 -6.62 -42.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492687858.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.240 kcal (2) G-P(sol) polarization free energy of solvation -35.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds