Wall clock time and date at job start Tue Mar 31 2020 06:06:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46501 * 109.47285 * 2 1 4 4 C 1.46502 * 120.00060 * 90.00273 * 3 2 1 5 5 C 1.50704 * 109.47077 * 89.99894 * 4 3 2 6 6 H 1.07999 * 120.00040 * 0.02562 * 5 4 3 7 7 C 1.37876 * 119.99700 * 180.02562 * 5 4 3 8 8 N 1.31516 * 119.99956 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 119.99799 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.46897 * 60.00054 * 9 7 5 11 11 H 1.48510 * 109.47027 * 179.97438 * 9 7 5 12 12 H 1.48493 * 109.47208 * 299.99911 * 9 7 5 13 13 C 1.34780 * 119.99969 * 269.99909 * 3 2 1 14 14 O 1.21714 * 119.99914 * 179.97438 * 13 3 2 15 15 C 1.46270 * 120.00198 * 0.02562 * 13 3 2 16 16 C 1.34939 * 120.00329 * 186.76728 * 15 13 3 17 17 C 1.47049 * 119.99595 * 11.45051 * 16 15 13 18 18 C 1.40292 * 120.91036 * 225.85193 * 17 16 15 19 19 N 1.31999 * 118.95589 * 179.71883 * 18 17 16 20 20 C 1.32462 * 120.94191 * 0.56696 * 19 18 17 21 21 O 1.35328 * 118.98736 * 179.72550 * 20 19 18 22 22 C 1.42904 * 117.00184 * 359.97438 * 21 20 19 23 23 N 1.32457 * 122.02395 * 359.70616 * 20 19 18 24 24 C 1.32004 * 120.94189 * 359.97438 * 23 20 19 25 25 H 1.08992 * 109.47142 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46913 * 300.00133 * 1 2 3 27 27 H 1.09003 * 109.47018 * 59.99290 * 1 2 3 28 28 H 1.08999 * 109.47277 * 240.00254 * 2 1 3 29 29 H 1.09001 * 109.47379 * 120.00317 * 2 1 3 30 30 H 1.08997 * 109.47150 * 210.00040 * 4 3 2 31 31 H 1.09003 * 109.46626 * 330.00253 * 4 3 2 32 32 H 0.96997 * 119.99782 * 180.02562 * 8 7 5 33 33 H 1.08003 * 119.99835 * 6.77117 * 15 13 3 34 34 H 1.08002 * 120.00404 * 191.44712 * 16 15 13 35 35 H 1.08004 * 120.51845 * 359.97438 * 18 17 16 36 36 H 1.08998 * 109.46951 * 299.99937 * 22 21 20 37 37 H 1.09001 * 109.47043 * 60.00089 * 22 21 20 38 38 H 1.09003 * 109.47152 * 180.02562 * 22 21 20 39 39 H 1.08000 * 120.52157 * 179.97438 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2626 2.0718 1.2687 5 6 3.6859 1.8349 1.7037 6 1 4.3429 1.2308 1.0957 7 6 4.1492 2.3895 2.8779 8 7 3.3492 3.1256 3.6180 9 14 5.9132 2.0954 3.4175 10 1 6.8411 2.6187 2.3829 11 1 6.1608 2.7955 4.7035 12 1 6.1402 0.6386 3.5947 13 6 2.2430 2.0166 -1.1672 14 8 2.6483 3.1642 -1.1672 15 6 1.9987 1.3273 -2.4340 16 6 2.3511 1.9107 -3.5986 17 6 3.2000 3.1114 -3.5920 18 6 2.8848 4.2213 -4.3900 19 7 3.6707 5.2811 -4.3499 20 6 4.7484 5.3011 -3.5799 21 8 5.5294 6.4062 -3.5735 22 6 5.1271 7.4899 -4.4137 23 7 5.0848 4.2728 -2.8157 24 6 4.3504 3.1762 -2.7915 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5140 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 2.0956 3.1410 1.1384 31 1 1.5818 1.6876 2.0284 32 1 3.6753 3.5161 4.4439 33 1 1.5362 0.3513 -2.4372 34 1 2.0096 1.4959 -4.5355 35 1 2.0106 4.2103 -5.0241 36 1 5.1014 7.1554 -5.4508 37 1 4.1351 7.8306 -4.1171 38 1 5.8382 8.3101 -4.3143 39 1 4.6313 2.3417 -2.1662 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492687858.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:32 Heat of formation + Delta-G solvation = -15.256626 kcal Electronic energy + Delta-G solvation = -23234.977760 eV Core-core repulsion = 19757.619879 eV Total energy + Delta-G solvation = -3477.357881 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.19149 -40.72504 -39.30190 -37.03941 -35.19465 -34.84491 -34.75790 -31.62547 -31.07455 -29.14650 -28.38250 -25.88808 -25.53123 -24.65784 -24.13562 -22.12842 -19.85761 -19.43008 -18.99179 -18.64384 -18.15330 -17.38835 -17.18457 -16.40643 -16.30221 -15.66043 -15.55783 -15.22149 -14.95370 -14.64362 -14.51010 -14.27010 -14.21079 -13.95195 -13.49032 -13.23623 -13.07985 -12.90450 -12.65846 -12.51950 -12.38789 -12.16589 -12.12671 -11.96167 -11.78296 -11.70791 -10.99549 -10.65667 -10.63513 -10.07388 -9.38846 -9.20505 -8.23676 -6.37998 -0.40965 0.19442 0.76717 1.32961 1.38926 1.44770 1.63705 2.30255 2.51212 2.54282 2.81026 3.06283 3.09614 3.65220 3.69349 3.82337 3.92714 4.12117 4.23743 4.36494 4.37996 4.47765 4.59513 4.65992 4.70097 4.81514 4.94406 5.02833 5.06300 5.13197 5.19530 5.21427 5.44768 5.51209 5.58554 5.74864 5.88925 6.05686 6.16546 6.70540 6.87098 7.08646 7.28694 7.54741 8.82860 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.012376 B = 0.005684 C = 0.004205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2261.821444 B = 4924.568014 C = 6656.727982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.098 3.902 3 N -0.597 5.597 4 C 0.266 3.734 5 C -0.536 4.536 6 H 0.055 0.945 7 C 0.008 3.992 8 N -0.930 5.930 9 Si 0.961 3.039 10 H -0.282 1.282 11 H -0.279 1.279 12 H -0.255 1.255 13 C 0.514 3.486 14 O -0.594 6.594 15 C -0.202 4.202 16 C -0.002 4.002 17 C -0.202 4.202 18 C 0.193 3.807 19 N -0.575 5.575 20 C 0.478 3.522 21 O -0.317 6.317 22 C 0.042 3.958 23 N -0.571 5.571 24 C 0.243 3.757 25 H 0.096 0.904 26 H 0.031 0.969 27 H 0.064 0.936 28 H 0.109 0.891 29 H 0.067 0.933 30 H -0.010 1.010 31 H 0.018 0.982 32 H 0.266 0.734 33 H 0.179 0.821 34 H 0.201 0.799 35 H 0.219 0.781 36 H 0.072 0.928 37 H 0.058 0.942 38 H 0.129 0.871 39 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.042 -5.275 -19.782 21.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.024 4.024 3 N -0.326 5.326 4 C 0.144 3.856 5 C -0.575 4.575 6 H 0.073 0.927 7 C -0.191 4.191 8 N -0.570 5.570 9 Si 0.786 3.214 10 H -0.208 1.208 11 H -0.205 1.205 12 H -0.180 1.180 13 C 0.306 3.694 14 O -0.478 6.478 15 C -0.223 4.223 16 C -0.022 4.022 17 C -0.207 4.207 18 C 0.029 3.971 19 N -0.305 5.305 20 C 0.176 3.824 21 O -0.219 6.219 22 C -0.052 4.052 23 N -0.297 5.297 24 C 0.077 3.923 25 H 0.114 0.886 26 H 0.050 0.950 27 H 0.083 0.917 28 H 0.127 0.873 29 H 0.086 0.914 30 H 0.009 0.991 31 H 0.036 0.964 32 H 0.074 0.926 33 H 0.196 0.804 34 H 0.218 0.782 35 H 0.236 0.764 36 H 0.091 0.909 37 H 0.076 0.924 38 H 0.147 0.853 39 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -4.008 -3.624 -19.427 20.165 hybrid contribution 0.340 -0.152 1.295 1.347 sum -3.667 -3.776 -18.133 18.881 Atomic orbital electron populations 1.22161 0.94613 1.03473 1.01634 1.21798 0.95237 0.81278 1.04057 1.48264 1.63090 1.14996 1.06287 1.18604 0.95075 0.91220 0.80691 1.21659 0.97816 1.31727 1.06258 0.92718 1.25824 1.02092 0.94578 0.96619 1.70047 1.37751 1.34371 1.14849 0.85563 0.79372 0.79237 0.77263 1.20786 1.20456 1.17957 1.19380 0.77693 0.86421 0.85925 1.90805 1.48482 1.20568 1.87908 1.23370 1.06586 1.02315 0.90005 1.22471 0.90488 0.89703 0.99572 1.20775 0.98658 0.99889 1.01377 1.23802 0.95834 0.84816 0.92653 1.67978 1.06611 1.30689 1.25241 1.20916 0.86430 0.87070 0.87939 1.86010 1.48175 1.22953 1.64800 1.23237 1.02416 0.85798 0.93768 1.67354 1.36993 1.01753 1.23605 1.23058 0.88568 0.92321 0.88365 0.88561 0.94985 0.91661 0.87283 0.91435 0.99142 0.96434 0.92562 0.80432 0.78247 0.76433 0.90937 0.92352 0.85290 0.83280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.70 10.24 71.98 0.74 -2.96 16 2 C 0.10 2.80 5.79 86.38 0.50 3.30 16 3 N -0.60 -24.56 2.46 -831.34 -2.04 -26.61 16 4 C 0.27 14.53 5.16 85.63 0.44 14.98 16 5 C -0.54 -31.40 9.39 25.60 0.24 -31.16 16 6 H 0.05 3.14 7.81 -2.91 -0.02 3.12 16 7 C 0.01 0.45 5.46 84.65 0.46 0.92 16 8 N -0.93 -58.16 13.29 21.45 0.28 -57.88 16 9 Si 0.96 46.68 29.54 68.60 2.03 48.71 16 10 H -0.28 -13.98 7.11 99.48 0.71 -13.27 16 11 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 12 H -0.26 -11.44 7.11 99.48 0.71 -10.74 16 13 C 0.51 20.10 6.78 86.33 0.59 20.69 16 14 O -0.59 -29.43 11.95 -4.39 -0.05 -29.49 16 15 C -0.20 -4.74 9.07 23.60 0.21 -4.53 16 16 C 0.00 -0.04 9.84 23.82 0.23 0.20 16 17 C -0.20 -5.76 4.43 -19.97 -0.09 -5.85 16 18 C 0.19 4.92 11.10 85.17 0.95 5.86 16 19 N -0.58 -18.23 9.18 -312.20 -2.87 -21.10 16 20 C 0.48 18.35 8.48 180.48 1.53 19.88 16 21 O -0.32 -11.25 10.55 -86.16 -0.91 -12.16 16 22 C 0.04 0.98 10.35 113.37 1.17 2.15 16 23 N -0.57 -24.65 10.44 -312.20 -3.26 -27.91 16 24 C 0.24 9.26 8.02 85.17 0.68 9.95 16 25 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 26 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.11 2.20 6.19 -2.39 -0.01 2.18 16 29 H 0.07 2.12 8.07 -2.39 -0.02 2.10 16 30 H -0.01 -0.61 7.42 -2.39 -0.02 -0.63 16 31 H 0.02 0.99 8.07 -2.39 -0.02 0.97 16 32 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 33 H 0.18 2.56 6.33 -2.91 -0.02 2.54 16 34 H 0.20 1.35 8.06 -2.91 -0.02 1.32 16 35 H 0.22 3.11 8.06 -2.91 -0.02 3.09 16 36 H 0.07 1.45 8.09 -2.39 -0.02 1.43 16 37 H 0.06 1.36 8.09 -2.39 -0.02 1.34 16 38 H 0.13 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.15 5.93 7.38 -2.91 -0.02 5.91 16 Total: -1.00 -87.28 337.27 1.89 -85.38 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: 1.05 Total: 7.63 kcal Atomic # 6 Polarization: 25.75 SS G_CDS: 7.66 Total: 33.41 kcal Atomic # 7 Polarization: -125.61 SS G_CDS: -7.88 Total: -133.49 kcal Atomic # 8 Polarization: -40.68 SS G_CDS: -0.96 Total: -41.64 kcal Atomic # 14 Polarization: 46.68 SS G_CDS: 2.03 Total: 48.71 kcal Total: -87.28 1.89 -85.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492687858.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.127 kcal (2) G-P(sol) polarization free energy of solvation -87.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds