Wall clock time and date at job start Tue Mar 31 2020 06:06:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46503 * 109.47204 * 2 1 4 4 C 1.46494 * 119.99779 * 270.00620 * 3 2 1 5 5 C 1.50702 * 109.47050 * 269.99559 * 4 3 2 6 6 H 1.07998 * 119.99895 * 0.02562 * 5 4 3 7 7 C 1.37882 * 120.00238 * 180.02562 * 5 4 3 8 8 N 1.31513 * 119.99904 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00064 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47252 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.46991 * 119.99770 * 9 7 5 12 12 H 1.48499 * 109.46914 * 239.99707 * 9 7 5 13 13 C 1.34770 * 119.99847 * 90.00069 * 3 2 1 14 14 O 1.21706 * 119.99904 * 180.02562 * 13 3 2 15 15 C 1.46344 * 119.99911 * 0.02562 * 13 3 2 16 16 C 1.34893 * 119.99783 * 173.27683 * 15 13 3 17 17 C 1.47106 * 120.00143 * 348.77609 * 16 15 13 18 18 C 1.39919 * 120.14165 * 311.91259 * 17 16 15 19 19 C 1.37765 * 119.85073 * 180.02562 * 18 17 16 20 20 C 1.38711 * 120.14908 * 359.97438 * 19 18 17 21 21 F 1.35095 * 119.85703 * 180.27569 * 20 19 18 22 22 C 1.38663 * 120.28643 * 359.97438 * 20 19 18 23 23 C 1.50701 * 119.92537 * 179.97438 * 22 20 19 24 24 C 1.37812 * 120.14809 * 0.02562 * 22 20 19 25 25 H 1.09003 * 109.46707 * 299.99712 * 1 2 3 26 26 H 1.08995 * 109.47379 * 59.99568 * 1 2 3 27 27 H 1.09001 * 109.46982 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46707 * 240.00288 * 2 1 3 29 29 H 1.08995 * 109.47379 * 120.00432 * 2 1 3 30 30 H 1.09001 * 109.47817 * 29.99714 * 4 3 2 31 31 H 1.08997 * 109.47040 * 150.00267 * 4 3 2 32 32 H 0.97001 * 120.00294 * 179.97438 * 8 7 5 33 33 H 1.07998 * 120.00151 * 353.27169 * 15 13 3 34 34 H 1.08009 * 119.99675 * 168.77592 * 16 15 13 35 35 H 1.08002 * 120.07516 * 0.02562 * 18 17 16 36 36 H 1.08001 * 119.92846 * 179.97438 * 19 18 17 37 37 H 1.09002 * 109.46762 * 90.00362 * 23 22 20 38 38 H 1.09001 * 109.47044 * 210.00028 * 23 22 20 39 39 H 1.08998 * 109.47469 * 329.99866 * 23 22 20 40 40 H 1.08000 * 120.07331 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2624 2.0718 -1.2687 5 6 3.6857 1.8351 -1.7038 6 1 4.3426 1.2303 -1.0963 7 6 4.1493 2.3905 -2.8776 8 7 3.3492 3.1266 -3.6177 9 14 5.9133 2.0965 -3.4173 10 1 6.6007 1.2405 -2.4173 11 1 5.9202 1.4182 -4.7384 12 1 6.6213 3.3973 -3.5249 13 6 2.2430 2.0165 1.1672 14 8 2.6483 3.1641 1.1672 15 6 1.9996 1.3264 2.4345 16 6 2.3511 1.9102 3.5987 17 6 3.1946 3.1154 3.5919 18 6 4.3590 3.1537 2.8171 19 6 5.1448 4.2853 2.8157 20 6 4.7835 5.3853 3.5797 21 9 5.5554 6.4940 3.5696 22 6 3.6302 5.3542 4.3489 23 6 3.2457 6.5536 5.1763 24 6 2.8354 4.2284 4.3593 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.5816 1.6877 -2.0284 31 1 2.0955 3.1410 -1.1383 32 1 3.6754 3.5177 -4.4432 33 1 1.5386 0.3498 2.4377 34 1 2.0133 1.4927 4.5357 35 1 4.6412 2.2981 2.2215 36 1 6.0441 4.3162 2.2184 37 1 2.6148 7.2164 4.5840 38 1 2.6987 6.2251 6.0600 39 1 4.1455 7.0868 5.4833 40 1 1.9376 4.2053 4.9591 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493823770.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:28 Heat of formation + Delta-G solvation = -36.951182 kcal Electronic energy + Delta-G solvation = -23151.057894 eV Core-core repulsion = 19652.839305 eV Total energy + Delta-G solvation = -3498.218589 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.138 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.61559 -39.59509 -38.34856 -35.38631 -33.73449 -32.78139 -32.19979 -30.08740 -29.46158 -27.20812 -26.62397 -24.05644 -22.99146 -22.38361 -21.95941 -20.07166 -17.80177 -17.30100 -16.93815 -16.40682 -16.12691 -15.49567 -15.39153 -14.66325 -14.34745 -14.09817 -13.70162 -13.39809 -13.35636 -13.29890 -13.07770 -12.92006 -12.79224 -12.26984 -12.22098 -11.98423 -11.69452 -11.63313 -11.25715 -11.14982 -10.89304 -10.75788 -10.72368 -10.51787 -10.12693 -9.64352 -9.45289 -8.98300 -8.56576 -8.43957 -7.70051 -7.59870 -6.04444 -4.09141 0.97778 1.61680 1.99827 3.28812 3.36754 3.39739 3.91835 3.98181 4.03730 4.44877 4.55573 4.80800 4.94237 5.00494 5.12578 5.30107 5.30964 5.36527 5.52933 5.55926 5.63465 5.64333 5.74571 5.76847 5.88250 6.02738 6.15177 6.19302 6.23994 6.35692 6.37404 6.50122 6.52273 6.61991 6.81225 7.11766 7.21963 7.46466 7.56743 7.92261 8.23631 8.45270 8.90829 9.12880 9.56111 11.03572 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.012813 B = 0.005593 C = 0.004234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2184.750592 B = 5005.147729 C = 6611.425740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.106 3.894 3 N -0.591 5.591 4 C 0.246 3.754 5 C -0.523 4.523 6 H 0.057 0.943 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.896 3.104 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.525 3.475 14 O -0.528 6.528 15 C -0.193 4.193 16 C -0.051 4.051 17 C -0.060 4.060 18 C -0.016 4.016 19 C -0.152 4.152 20 C 0.097 3.903 21 F -0.145 7.145 22 C -0.134 4.134 23 C -0.108 4.108 24 C -0.081 4.081 25 H 0.051 0.949 26 H 0.060 0.940 27 H 0.058 0.942 28 H 0.081 0.919 29 H 0.066 0.934 30 H 0.030 0.970 31 H 0.043 0.957 32 H 0.262 0.738 33 H 0.130 0.870 34 H 0.132 0.868 35 H 0.125 0.875 36 H 0.131 0.869 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.065 0.935 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.311 -3.351 16.289 16.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.019 4.019 3 N -0.322 5.322 4 C 0.127 3.873 5 C -0.562 4.562 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.723 3.277 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.313 3.687 14 O -0.407 6.407 15 C -0.213 4.213 16 C -0.071 4.071 17 C -0.060 4.060 18 C -0.035 4.035 19 C -0.171 4.171 20 C 0.078 3.922 21 F -0.124 7.124 22 C -0.135 4.135 23 C -0.164 4.164 24 C -0.099 4.099 25 H 0.070 0.930 26 H 0.079 0.921 27 H 0.077 0.923 28 H 0.100 0.900 29 H 0.084 0.916 30 H 0.048 0.952 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.148 0.852 34 H 0.149 0.851 35 H 0.143 0.857 36 H 0.149 0.851 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -3.078 -2.598 16.057 16.555 hybrid contribution 0.955 -0.107 -0.715 1.197 sum -2.123 -2.704 15.343 15.723 Atomic orbital electron populations 1.22234 0.96826 1.01328 1.02398 1.21437 0.93479 0.84361 1.02583 1.48230 1.63029 1.13043 1.07851 1.19256 0.96211 0.93678 0.78149 1.21442 0.96855 1.31709 1.06189 0.92489 1.24927 0.97739 0.94958 0.96432 1.69940 1.35552 1.33485 1.14356 0.86483 0.84769 0.78055 0.78358 1.19808 1.20972 1.20895 1.18270 0.79362 0.86872 0.84167 1.90860 1.45336 1.17586 1.86887 1.23427 1.04129 1.00381 0.93410 1.22209 0.94030 0.93359 0.97453 1.18847 0.95245 0.94301 0.97632 1.20950 0.92166 0.97472 0.92869 1.20931 1.02340 0.93009 1.00794 1.17632 0.90943 0.83560 1.00076 1.91431 1.74305 1.51288 1.95346 1.19613 0.95211 0.97631 1.01063 1.20647 1.01912 0.95245 0.98631 1.20801 0.98477 0.91693 0.98949 0.92956 0.92117 0.92256 0.90042 0.91607 0.95185 0.93871 0.92796 0.85240 0.85060 0.85670 0.85083 0.91198 0.91428 0.91634 0.85607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.24 10.24 37.16 0.38 -1.86 16 2 C 0.11 1.65 5.80 -4.04 -0.02 1.63 16 3 N -0.59 -12.21 2.46 -176.73 -0.43 -12.65 16 4 C 0.25 6.37 5.16 -5.20 -0.03 6.34 16 5 C -0.52 -14.62 9.39 -34.44 -0.32 -14.95 16 6 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -26.61 13.29 55.43 0.74 -25.88 16 9 Si 0.90 21.82 29.54 -169.99 -5.02 16.80 16 10 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 13 C 0.52 10.57 6.81 -13.00 -0.09 10.49 16 14 O -0.53 -12.61 12.05 5.18 0.06 -12.55 16 15 C -0.19 -2.82 9.05 -37.51 -0.34 -3.16 16 16 C -0.05 -0.67 9.78 -37.17 -0.36 -1.03 16 17 C -0.06 -0.94 4.34 -105.06 -0.46 -1.39 16 18 C -0.02 -0.29 6.78 -39.13 -0.27 -0.55 16 19 C -0.15 -2.66 10.01 -39.58 -0.40 -3.05 16 20 C 0.10 1.63 7.25 -39.25 -0.28 1.34 16 21 F -0.15 -2.41 16.46 2.25 0.04 -2.37 16 22 C -0.13 -1.99 5.88 -104.62 -0.62 -2.60 16 23 C -0.11 -1.24 9.83 36.01 0.35 -0.89 16 24 C -0.08 -1.15 9.44 -39.12 -0.37 -1.52 16 25 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.08 1.33 8.07 -51.93 -0.42 0.92 16 29 H 0.07 0.85 6.19 -51.93 -0.32 0.53 16 30 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 31 H 0.04 1.27 7.42 -51.93 -0.39 0.89 16 32 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 33 H 0.13 1.48 6.33 -52.49 -0.33 1.15 16 34 H 0.13 1.19 8.06 -52.48 -0.42 0.77 16 35 H 0.13 2.29 7.46 -52.49 -0.39 1.90 16 36 H 0.13 2.17 8.06 -52.49 -0.42 1.75 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.07 0.62 8.08 -51.93 -0.42 0.20 16 39 H 0.06 0.73 7.63 -51.93 -0.40 0.33 16 40 H 0.13 1.42 8.06 -52.49 -0.42 0.99 16 LS Contribution 342.43 15.07 5.16 5.16 Total: -1.00 -32.81 342.43 -7.96 -40.77 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: -5.59 Total: 0.28 kcal Atomic # 6 Polarization: -6.64 SS G_CDS: -2.91 Total: -9.56 kcal Atomic # 7 Polarization: -38.83 SS G_CDS: 0.30 Total: -38.52 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: 0.06 Total: -12.55 kcal Atomic # 9 Polarization: -2.41 SS G_CDS: 0.04 Total: -2.37 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.81 -7.96 -40.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493823770.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.818 kcal (2) G-P(sol) polarization free energy of solvation -32.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds