Wall clock time and date at job start Tue Mar 31 2020 06:06:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46503 * 109.47204 * 2 1 4 4 C 1.46494 * 119.99779 * 270.00620 * 3 2 1 5 5 C 1.50702 * 109.47050 * 269.99559 * 4 3 2 6 6 H 1.07998 * 119.99895 * 0.02562 * 5 4 3 7 7 C 1.37882 * 120.00238 * 180.02562 * 5 4 3 8 8 N 1.31513 * 119.99904 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00064 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47252 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.46991 * 119.99770 * 9 7 5 12 12 H 1.48499 * 109.46914 * 239.99707 * 9 7 5 13 13 C 1.34770 * 119.99847 * 90.00069 * 3 2 1 14 14 O 1.21706 * 119.99904 * 180.02562 * 13 3 2 15 15 C 1.46344 * 119.99911 * 0.02562 * 13 3 2 16 16 C 1.34893 * 119.99783 * 173.27683 * 15 13 3 17 17 C 1.47106 * 120.00143 * 348.77609 * 16 15 13 18 18 C 1.39919 * 120.14165 * 311.91259 * 17 16 15 19 19 C 1.37765 * 119.85073 * 180.02562 * 18 17 16 20 20 C 1.38711 * 120.14908 * 359.97438 * 19 18 17 21 21 F 1.35095 * 119.85703 * 180.27569 * 20 19 18 22 22 C 1.38663 * 120.28643 * 359.97438 * 20 19 18 23 23 C 1.50701 * 119.92537 * 179.97438 * 22 20 19 24 24 C 1.37812 * 120.14809 * 0.02562 * 22 20 19 25 25 H 1.09003 * 109.46707 * 299.99712 * 1 2 3 26 26 H 1.08995 * 109.47379 * 59.99568 * 1 2 3 27 27 H 1.09001 * 109.46982 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46707 * 240.00288 * 2 1 3 29 29 H 1.08995 * 109.47379 * 120.00432 * 2 1 3 30 30 H 1.09001 * 109.47817 * 29.99714 * 4 3 2 31 31 H 1.08997 * 109.47040 * 150.00267 * 4 3 2 32 32 H 0.97001 * 120.00294 * 179.97438 * 8 7 5 33 33 H 1.07998 * 120.00151 * 353.27169 * 15 13 3 34 34 H 1.08009 * 119.99675 * 168.77592 * 16 15 13 35 35 H 1.08002 * 120.07516 * 0.02562 * 18 17 16 36 36 H 1.08001 * 119.92846 * 179.97438 * 19 18 17 37 37 H 1.09002 * 109.46762 * 90.00362 * 23 22 20 38 38 H 1.09001 * 109.47044 * 210.00028 * 23 22 20 39 39 H 1.08998 * 109.47469 * 329.99866 * 23 22 20 40 40 H 1.08000 * 120.07331 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2624 2.0718 -1.2687 5 6 3.6857 1.8351 -1.7038 6 1 4.3426 1.2303 -1.0963 7 6 4.1493 2.3905 -2.8776 8 7 3.3492 3.1266 -3.6177 9 14 5.9133 2.0965 -3.4173 10 1 6.6007 1.2405 -2.4173 11 1 5.9202 1.4182 -4.7384 12 1 6.6213 3.3973 -3.5249 13 6 2.2430 2.0165 1.1672 14 8 2.6483 3.1641 1.1672 15 6 1.9996 1.3264 2.4345 16 6 2.3511 1.9102 3.5987 17 6 3.1946 3.1154 3.5919 18 6 4.3590 3.1537 2.8171 19 6 5.1448 4.2853 2.8157 20 6 4.7835 5.3853 3.5797 21 9 5.5554 6.4940 3.5696 22 6 3.6302 5.3542 4.3489 23 6 3.2457 6.5536 5.1763 24 6 2.8354 4.2284 4.3593 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.5816 1.6877 -2.0284 31 1 2.0955 3.1410 -1.1383 32 1 3.6754 3.5177 -4.4432 33 1 1.5386 0.3498 2.4377 34 1 2.0133 1.4927 4.5357 35 1 4.6412 2.2981 2.2215 36 1 6.0441 4.3162 2.2184 37 1 2.6148 7.2164 4.5840 38 1 2.6987 6.2251 6.0600 39 1 4.1455 7.0868 5.4833 40 1 1.9376 4.2053 4.9591 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493823770.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:27 Heat of formation + Delta-G solvation = -55.504379 kcal Electronic energy + Delta-G solvation = -23151.862421 eV Core-core repulsion = 19652.839305 eV Total energy + Delta-G solvation = -3499.023116 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.138 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.91101 -41.00373 -39.68366 -36.94424 -35.08158 -34.72590 -33.39513 -31.59415 -30.70282 -28.99664 -27.75886 -25.75141 -24.40549 -23.69482 -23.30311 -21.43017 -19.19495 -18.61554 -18.58181 -18.21604 -17.42300 -17.10870 -16.67607 -16.33523 -15.96457 -15.49518 -14.97817 -14.74577 -14.60299 -14.40096 -14.37127 -14.21124 -14.04342 -13.96927 -13.48747 -13.24698 -13.19169 -13.04125 -12.79504 -12.70099 -12.54595 -12.29198 -12.16783 -11.96690 -11.81188 -11.69281 -10.66893 -10.66011 -10.47550 -9.80959 -9.29771 -8.96520 -8.23133 -6.37759 -0.22759 0.39077 0.80163 1.32671 1.35317 1.46554 2.30189 2.53910 2.56148 2.72413 3.06139 3.33081 3.71804 3.81682 3.84747 3.90798 4.18777 4.28117 4.41174 4.47000 4.50402 4.64689 4.67753 4.76543 4.87042 4.92964 5.02040 5.03614 5.07644 5.10089 5.19450 5.23085 5.29428 5.34579 5.41117 5.45314 5.58920 5.67004 5.91052 6.01604 6.07157 6.71455 6.90120 7.29060 7.59641 8.83576 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.012813 B = 0.005593 C = 0.004234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2184.750592 B = 5005.147729 C = 6611.425740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.099 3.901 3 N -0.601 5.601 4 C 0.265 3.735 5 C -0.534 4.534 6 H 0.053 0.947 7 C 0.007 3.993 8 N -0.930 5.930 9 Si 0.963 3.037 10 H -0.265 1.265 11 H -0.268 1.268 12 H -0.285 1.285 13 C 0.513 3.487 14 O -0.579 6.579 15 C -0.205 4.205 16 C -0.023 4.023 17 C -0.071 4.071 18 C -0.037 4.037 19 C -0.176 4.176 20 C 0.072 3.928 21 F -0.150 7.150 22 C -0.134 4.134 23 C -0.106 4.106 24 C -0.077 4.077 25 H 0.062 0.938 26 H 0.033 0.967 27 H 0.095 0.905 28 H 0.067 0.933 29 H 0.104 0.896 30 H 0.016 0.984 31 H -0.006 1.006 32 H 0.266 0.734 33 H 0.172 0.828 34 H 0.190 0.810 35 H 0.106 0.894 36 H 0.122 0.878 37 H 0.072 0.928 38 H 0.099 0.901 39 H 0.066 0.934 40 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.414 -5.172 19.100 20.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.023 4.023 3 N -0.331 5.331 4 C 0.143 3.857 5 C -0.573 4.573 6 H 0.071 0.929 7 C -0.191 4.191 8 N -0.570 5.570 9 Si 0.788 3.212 10 H -0.190 1.190 11 H -0.194 1.194 12 H -0.211 1.211 13 C 0.305 3.695 14 O -0.461 6.461 15 C -0.225 4.225 16 C -0.042 4.042 17 C -0.071 4.071 18 C -0.056 4.056 19 C -0.195 4.195 20 C 0.053 3.947 21 F -0.129 7.129 22 C -0.135 4.135 23 C -0.163 4.163 24 C -0.095 4.095 25 H 0.081 0.919 26 H 0.052 0.948 27 H 0.114 0.886 28 H 0.085 0.915 29 H 0.122 0.878 30 H 0.034 0.966 31 H 0.012 0.988 32 H 0.075 0.925 33 H 0.189 0.811 34 H 0.207 0.793 35 H 0.124 0.876 36 H 0.140 0.860 37 H 0.090 0.910 38 H 0.118 0.882 39 H 0.085 0.915 40 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -4.198 -4.466 18.886 19.856 hybrid contribution 1.285 0.513 -1.545 2.074 sum -2.913 -3.953 17.342 18.024 Atomic orbital electron populations 1.22158 0.94658 1.03412 1.01610 1.21755 0.95224 0.81553 1.03776 1.48236 1.63643 1.14907 1.06315 1.18617 0.95067 0.91379 0.80609 1.21708 0.97807 1.31502 1.06263 0.92905 1.25828 1.02132 0.94601 0.96555 1.70061 1.37629 1.34441 1.14875 0.85433 0.79342 0.77912 0.78540 1.18963 1.19355 1.21085 1.19275 0.77940 0.86634 0.85677 1.90838 1.47484 1.20040 1.87773 1.23358 1.06587 1.02065 0.90471 1.22744 0.91141 0.91120 0.99171 1.19261 0.94745 0.96221 0.96921 1.20902 0.93835 0.96924 0.93915 1.21018 1.02716 0.94045 1.01740 1.17877 0.92221 0.83324 1.01253 1.91405 1.74634 1.51364 1.95498 1.20091 0.94021 0.99144 1.00211 1.20739 1.02407 0.93872 0.99260 1.21273 0.99270 0.90545 0.98411 0.91869 0.94796 0.88625 0.91451 0.87779 0.96561 0.98818 0.92540 0.81122 0.79315 0.87621 0.86043 0.90962 0.88199 0.91549 0.81513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.88 10.24 71.98 0.74 -3.14 16 2 C 0.10 2.96 5.80 86.38 0.50 3.46 16 3 N -0.60 -25.28 2.46 -831.28 -2.04 -27.32 16 4 C 0.27 14.50 5.16 85.63 0.44 14.94 16 5 C -0.53 -31.10 9.39 25.60 0.24 -30.86 16 6 H 0.05 3.04 7.81 -2.91 -0.02 3.02 16 7 C 0.01 0.44 5.46 84.66 0.46 0.90 16 8 N -0.93 -57.47 13.29 21.45 0.28 -57.18 16 9 Si 0.96 45.83 29.54 68.60 2.03 47.85 16 10 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 11 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 12 H -0.28 -13.57 7.11 99.48 0.71 -12.86 16 13 C 0.51 20.73 6.81 86.35 0.59 21.32 16 14 O -0.58 -28.79 12.05 -4.37 -0.05 -28.85 16 15 C -0.20 -5.33 9.05 23.61 0.21 -5.12 16 16 C -0.02 -0.50 9.78 23.83 0.23 -0.27 16 17 C -0.07 -2.10 4.34 -20.15 -0.09 -2.19 16 18 C -0.04 -1.35 6.78 22.57 0.15 -1.20 16 19 C -0.18 -6.56 10.01 22.27 0.22 -6.34 16 20 C 0.07 2.49 7.25 22.48 0.16 2.65 16 21 F -0.15 -5.17 16.46 44.97 0.74 -4.43 16 22 C -0.13 -3.78 5.88 -19.86 -0.12 -3.89 16 23 C -0.11 -2.18 9.83 71.24 0.70 -1.48 16 24 C -0.08 -1.98 9.44 22.57 0.21 -1.76 16 25 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.07 2.18 8.07 -2.39 -0.02 2.16 16 29 H 0.10 2.31 6.19 -2.39 -0.01 2.29 16 30 H 0.02 0.92 8.07 -2.39 -0.02 0.90 16 31 H -0.01 -0.40 7.42 -2.39 -0.02 -0.42 16 32 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 33 H 0.17 2.98 6.33 -2.91 -0.02 2.96 16 34 H 0.19 2.05 8.06 -2.91 -0.02 2.03 16 35 H 0.11 4.11 7.46 -2.91 -0.02 4.09 16 36 H 0.12 4.48 8.06 -2.91 -0.02 4.46 16 37 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.10 1.41 8.08 -2.39 -0.02 1.39 16 39 H 0.07 1.35 7.63 -2.39 -0.02 1.34 16 40 H 0.17 2.85 8.06 -2.91 -0.02 2.83 16 Total: -1.00 -78.15 342.43 6.65 -71.49 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: 1.03 Total: 11.41 kcal Atomic # 6 Polarization: -17.64 SS G_CDS: 4.66 Total: -12.98 kcal Atomic # 7 Polarization: -82.74 SS G_CDS: -1.76 Total: -84.50 kcal Atomic # 8 Polarization: -28.79 SS G_CDS: -0.05 Total: -28.85 kcal Atomic # 9 Polarization: -5.17 SS G_CDS: 0.74 Total: -4.43 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.85 kcal Total: -78.15 6.65 -71.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493823770.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.990 kcal (2) G-P(sol) polarization free energy of solvation -78.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds