Wall clock time and date at job start Tue Mar 31 2020 06:46:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35523 * 116.99659 * 2 1 4 4 C 1.39351 * 120.02438 * 179.97438 * 3 2 1 5 5 C 1.38415 * 118.03488 * 180.02562 * 4 3 2 6 6 C 1.39982 * 117.96795 * 0.28174 * 5 4 3 7 7 C 1.47935 * 120.11632 * 179.72509 * 6 5 4 8 8 O 1.21545 * 120.00168 * 9.25507 * 7 6 5 9 9 N 1.34772 * 120.00102 * 189.26210 * 7 6 5 10 10 C 1.46923 * 120.63008 * 7.32073 * 9 7 6 11 11 C 1.53626 * 108.54591 * 126.36702 * 10 9 7 12 12 C 1.53040 * 109.24092 * 54.85642 * 11 10 9 13 13 C 1.50700 * 109.44771 * 178.49896 * 12 11 10 14 14 H 1.07999 * 120.00242 * 120.06325 * 13 12 11 15 15 C 1.37879 * 120.00004 * 300.05680 * 13 12 11 16 16 N 1.31515 * 119.99881 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00067 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.46816 * 60.00395 * 17 15 13 19 19 H 1.48494 * 109.46913 * 180.02562 * 17 15 13 20 20 H 1.48494 * 109.46987 * 300.00254 * 17 15 13 21 21 C 1.53043 * 109.53582 * 298.51028 * 12 11 10 22 22 C 1.46923 * 120.63204 * 187.59447 * 9 7 6 23 23 N 1.32743 * 119.76572 * 359.42978 * 6 5 4 24 24 N 1.28357 * 122.08647 * 0.59371 * 23 6 5 25 25 H 1.08997 * 109.47257 * 299.99913 * 1 2 3 26 26 H 1.08997 * 109.47323 * 59.99818 * 1 2 3 27 27 H 1.09003 * 109.46806 * 180.02562 * 1 2 3 28 28 H 1.07998 * 120.98681 * 0.02562 * 4 3 2 29 29 H 1.08005 * 121.01821 * 180.02562 * 5 4 3 30 30 H 1.09003 * 109.58735 * 246.19956 * 10 9 7 31 31 H 1.09003 * 109.58887 * 6.62294 * 10 9 7 32 32 H 1.09002 * 109.63463 * 294.86470 * 11 10 9 33 33 H 1.09001 * 109.43149 * 174.72630 * 11 10 9 34 34 H 1.09001 * 109.46162 * 58.52924 * 12 11 10 35 35 H 0.96995 * 119.99882 * 179.97438 * 16 15 13 36 36 H 1.08992 * 109.49780 * 301.41085 * 21 12 11 37 37 H 1.09007 * 109.49683 * 181.31873 * 21 12 11 38 38 H 1.09000 * 109.58759 * 353.37945 * 22 9 7 39 39 H 1.09001 * 109.58601 * 113.65701 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2076 0.0000 4 6 3.4358 1.2812 0.0005 5 6 4.0209 2.5356 0.0011 6 6 3.1780 3.6531 0.0071 7 6 3.7527 5.0163 0.0141 8 8 4.9460 5.1736 -0.1547 9 7 2.9530 6.0837 0.2077 10 6 1.5408 5.9049 0.5714 11 6 1.2582 6.7146 1.8460 12 6 1.6690 8.1714 1.6195 13 6 1.3596 8.9777 2.8545 14 1 2.1536 9.4883 3.3790 15 6 0.0627 9.0636 3.3148 16 7 -0.9042 8.4414 2.6763 17 14 -0.3209 10.0636 4.8452 18 1 0.0759 11.4776 4.6248 19 1 -1.7771 9.9961 5.1284 20 1 0.4335 9.5118 5.9990 21 6 3.1698 8.2405 1.3282 22 6 3.4754 7.4482 0.0533 23 7 1.8612 3.4854 0.0006 24 7 1.3222 2.3205 0.0001 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 4.0399 0.3860 0.0005 29 1 5.0950 2.6487 0.0011 30 1 0.9065 6.2622 -0.2399 31 1 1.3417 4.8492 0.7557 32 1 1.8292 6.3006 2.6770 33 1 0.1938 6.6683 2.0765 34 1 1.1156 8.5773 0.7727 35 1 -1.8165 8.5016 3.0003 36 1 3.7228 7.8122 2.1641 37 1 3.4661 9.2804 1.1902 38 1 4.5534 7.4112 -0.1044 39 1 2.9976 7.9279 -0.8010 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000541979122.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:59 Heat of formation + Delta-G solvation = 3.270619 kcal Electronic energy + Delta-G solvation = -23300.329249 eV Core-core repulsion = 19823.774769 eV Total energy + Delta-G solvation = -3476.554479 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.54485 -39.66188 -38.46571 -36.84113 -33.73041 -33.31855 -32.33085 -30.89148 -29.89657 -27.87942 -26.50760 -25.19293 -24.17661 -22.86581 -22.22094 -20.54781 -19.04611 -18.65868 -18.15189 -16.93452 -16.57786 -16.22921 -15.68701 -15.19481 -14.84689 -14.56130 -14.51553 -14.15954 -13.98588 -13.61978 -13.05261 -12.84740 -12.75252 -12.34256 -12.26991 -11.90333 -11.80276 -11.46286 -11.02109 -10.88847 -10.64123 -10.50596 -10.33436 -10.10312 -9.83900 -9.80370 -9.44925 -9.27597 -9.13303 -8.68104 -8.32305 -7.98669 -5.98179 -4.04682 0.41654 0.54152 2.57885 2.72604 3.21973 3.32257 3.37025 3.39819 3.58530 3.83047 4.10070 4.44150 4.50536 4.65235 4.72356 4.97384 5.05325 5.19065 5.31441 5.37496 5.50831 5.69309 5.81093 5.94943 6.01105 6.15083 6.30442 6.49252 6.62305 6.68862 6.82277 6.90027 7.06708 7.20516 7.35968 7.70724 7.86378 7.97644 8.09206 8.26511 8.43323 8.45301 8.98375 9.59951 11.07092 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.018387 B = 0.004295 C = 0.003635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.470522 B = 6517.598002 C = 7700.002502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.300 6.300 3 C 0.274 3.726 4 C -0.141 4.141 5 C -0.033 4.033 6 C 0.001 3.999 7 C 0.569 3.431 8 O -0.551 6.551 9 N -0.573 5.573 10 C 0.074 3.926 11 C -0.122 4.122 12 C 0.047 3.953 13 C -0.514 4.514 14 H 0.054 0.946 15 C 0.062 3.938 16 N -0.890 5.890 17 Si 0.890 3.110 18 H -0.278 1.278 19 H -0.288 1.288 20 H -0.278 1.278 21 C -0.122 4.122 22 C 0.109 3.891 23 N -0.154 5.154 24 N -0.304 5.304 25 H 0.067 0.933 26 H 0.065 0.935 27 H 0.101 0.899 28 H 0.162 0.838 29 H 0.169 0.831 30 H 0.064 0.936 31 H 0.122 0.878 32 H 0.035 0.965 33 H 0.105 0.895 34 H 0.028 0.972 35 H 0.261 0.739 36 H 0.052 0.948 37 H 0.061 0.939 38 H 0.080 0.920 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.818 -15.808 -6.577 17.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.203 6.203 3 C 0.090 3.910 4 C -0.170 4.170 5 C -0.061 4.061 6 C -0.147 4.147 7 C 0.354 3.646 8 O -0.430 6.430 9 N -0.303 5.303 10 C -0.048 4.048 11 C -0.161 4.161 12 C 0.028 3.972 13 C -0.552 4.552 14 H 0.072 0.928 15 C -0.139 4.139 16 N -0.529 5.529 17 Si 0.718 3.282 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.204 1.204 21 C -0.160 4.160 22 C -0.012 4.012 23 N -0.001 5.001 24 N -0.162 5.162 25 H 0.085 0.915 26 H 0.084 0.916 27 H 0.120 0.880 28 H 0.180 0.820 29 H 0.186 0.814 30 H 0.082 0.918 31 H 0.138 0.862 32 H 0.053 0.947 33 H 0.123 0.877 34 H 0.046 0.954 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.080 0.920 38 H 0.098 0.902 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.818 -15.390 -6.665 17.200 hybrid contribution 0.693 -0.004 0.944 1.171 sum 4.511 -15.393 -5.721 17.030 Atomic orbital electron populations 1.23070 0.76152 1.03641 1.03405 1.86193 1.23758 1.23384 1.86983 1.21667 0.91041 0.87181 0.91148 1.21504 0.92210 0.99785 1.03549 1.22268 1.02906 0.90004 0.90957 1.22884 0.91959 0.96543 1.03319 1.17462 0.85803 0.82963 0.78378 1.90744 1.14251 1.85363 1.52614 1.48187 1.12369 1.05517 1.64199 1.23208 0.78224 1.04262 0.99122 1.22108 1.04566 0.96408 0.93017 1.18668 0.88937 0.92587 0.96978 1.21169 0.93064 1.30101 1.10838 0.92810 1.24954 0.96403 0.95613 0.96932 1.69836 1.00340 1.42904 1.39814 0.86693 0.77097 0.80772 0.83633 1.20323 1.21321 1.20399 1.22005 1.00912 0.98193 0.94939 1.21826 0.99384 0.80642 0.99389 1.73289 1.09727 1.12171 1.04919 1.73305 1.31842 0.94273 1.16745 0.91461 0.91595 0.88039 0.82031 0.81365 0.91807 0.86189 0.94663 0.87722 0.95394 0.92932 0.92900 0.92010 0.90186 0.91683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.39 101.05 1.05 1.31 16 2 O -0.30 -3.13 10.48 -18.26 -0.19 -3.32 16 3 C 0.27 3.32 7.57 -16.78 -0.13 3.19 16 4 C -0.14 -1.43 10.14 -39.10 -0.40 -1.82 16 5 C -0.03 -0.39 9.71 -38.86 -0.38 -0.77 16 6 C 0.00 0.01 6.66 -82.85 -0.55 -0.54 16 7 C 0.57 10.24 7.65 -12.29 -0.09 10.15 16 8 O -0.55 -10.61 15.85 5.33 0.08 -10.53 16 9 N -0.57 -10.82 2.97 -173.58 -0.51 -11.34 16 10 C 0.07 1.45 5.93 -3.49 -0.02 1.43 16 11 C -0.12 -2.84 5.17 -26.39 -0.14 -2.97 16 12 C 0.05 1.14 2.06 -91.73 -0.19 0.95 16 13 C -0.51 -13.89 8.56 -34.44 -0.29 -14.19 16 14 H 0.05 1.44 7.74 -52.49 -0.41 1.04 16 15 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 16 N -0.89 -24.85 11.30 55.43 0.63 -24.23 16 17 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 18 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 19 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 C -0.12 -2.54 5.30 -26.61 -0.14 -2.68 16 22 C 0.11 2.02 6.44 -3.71 -0.02 1.99 16 23 N -0.15 -2.48 7.32 33.32 0.24 -2.24 16 24 N -0.30 -4.45 10.40 30.54 0.32 -4.13 16 25 H 0.07 0.58 8.11 -51.93 -0.42 0.16 16 26 H 0.07 0.55 8.11 -51.93 -0.42 0.12 16 27 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.16 1.06 8.06 -52.49 -0.42 0.64 16 29 H 0.17 1.66 7.74 -52.48 -0.41 1.26 16 30 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.12 2.28 4.00 -133.37 -0.53 1.75 16 32 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.10 2.70 6.03 -51.93 -0.31 2.38 16 34 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 36 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.08 1.42 7.00 -51.93 -0.36 1.06 16 39 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 322.18 15.07 4.86 4.86 Total: -1.00 -30.54 322.18 -6.38 -36.92 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: -5.38 Total: 0.27 kcal Atomic # 6 Polarization: -0.95 SS G_CDS: -1.40 Total: -2.35 kcal Atomic # 7 Polarization: -42.61 SS G_CDS: 0.67 Total: -41.94 kcal Atomic # 8 Polarization: -13.75 SS G_CDS: -0.11 Total: -13.85 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.54 -6.38 -36.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541979122.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.194 kcal (2) G-P(sol) polarization free energy of solvation -30.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds