Wall clock time and date at job start Tue Mar 31 2020 06:46:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35523 * 116.99659 * 2 1 4 4 C 1.39351 * 120.02438 * 179.97438 * 3 2 1 5 5 C 1.38415 * 118.03488 * 180.02562 * 4 3 2 6 6 C 1.39982 * 117.96795 * 0.28174 * 5 4 3 7 7 C 1.47935 * 120.11632 * 179.72509 * 6 5 4 8 8 O 1.21545 * 120.00168 * 9.25507 * 7 6 5 9 9 N 1.34772 * 120.00102 * 189.26210 * 7 6 5 10 10 C 1.46923 * 120.63008 * 7.32073 * 9 7 6 11 11 C 1.53626 * 108.54591 * 126.36702 * 10 9 7 12 12 C 1.53040 * 109.24092 * 54.85642 * 11 10 9 13 13 C 1.50700 * 109.44771 * 178.49896 * 12 11 10 14 14 H 1.07999 * 120.00242 * 120.06325 * 13 12 11 15 15 C 1.37879 * 120.00004 * 300.05680 * 13 12 11 16 16 N 1.31515 * 119.99881 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00067 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.46816 * 60.00395 * 17 15 13 19 19 H 1.48494 * 109.46913 * 180.02562 * 17 15 13 20 20 H 1.48494 * 109.46987 * 300.00254 * 17 15 13 21 21 C 1.53043 * 109.53582 * 298.51028 * 12 11 10 22 22 C 1.46923 * 120.63204 * 187.59447 * 9 7 6 23 23 N 1.32743 * 119.76572 * 359.42978 * 6 5 4 24 24 N 1.28357 * 122.08647 * 0.59371 * 23 6 5 25 25 H 1.08997 * 109.47257 * 299.99913 * 1 2 3 26 26 H 1.08997 * 109.47323 * 59.99818 * 1 2 3 27 27 H 1.09003 * 109.46806 * 180.02562 * 1 2 3 28 28 H 1.07998 * 120.98681 * 0.02562 * 4 3 2 29 29 H 1.08005 * 121.01821 * 180.02562 * 5 4 3 30 30 H 1.09003 * 109.58735 * 246.19956 * 10 9 7 31 31 H 1.09003 * 109.58887 * 6.62294 * 10 9 7 32 32 H 1.09002 * 109.63463 * 294.86470 * 11 10 9 33 33 H 1.09001 * 109.43149 * 174.72630 * 11 10 9 34 34 H 1.09001 * 109.46162 * 58.52924 * 12 11 10 35 35 H 0.96995 * 119.99882 * 179.97438 * 16 15 13 36 36 H 1.08992 * 109.49780 * 301.41085 * 21 12 11 37 37 H 1.09007 * 109.49683 * 181.31873 * 21 12 11 38 38 H 1.09000 * 109.58759 * 353.37945 * 22 9 7 39 39 H 1.09001 * 109.58601 * 113.65701 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2076 0.0000 4 6 3.4358 1.2812 0.0005 5 6 4.0209 2.5356 0.0011 6 6 3.1780 3.6531 0.0071 7 6 3.7527 5.0163 0.0141 8 8 4.9460 5.1736 -0.1547 9 7 2.9530 6.0837 0.2077 10 6 1.5408 5.9049 0.5714 11 6 1.2582 6.7146 1.8460 12 6 1.6690 8.1714 1.6195 13 6 1.3596 8.9777 2.8545 14 1 2.1536 9.4883 3.3790 15 6 0.0627 9.0636 3.3148 16 7 -0.9042 8.4414 2.6763 17 14 -0.3209 10.0636 4.8452 18 1 0.0759 11.4776 4.6248 19 1 -1.7771 9.9961 5.1284 20 1 0.4335 9.5118 5.9990 21 6 3.1698 8.2405 1.3282 22 6 3.4754 7.4482 0.0533 23 7 1.8612 3.4854 0.0006 24 7 1.3222 2.3205 0.0001 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 4.0399 0.3860 0.0005 29 1 5.0950 2.6487 0.0011 30 1 0.9065 6.2622 -0.2399 31 1 1.3417 4.8492 0.7557 32 1 1.8292 6.3006 2.6770 33 1 0.1938 6.6683 2.0765 34 1 1.1156 8.5773 0.7727 35 1 -1.8165 8.5016 3.0003 36 1 3.7228 7.8122 2.1641 37 1 3.4661 9.2804 1.1902 38 1 4.5534 7.4112 -0.1044 39 1 2.9976 7.9279 -0.8010 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000541979122.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:59 Heat of formation + Delta-G solvation = -17.579629 kcal Electronic energy + Delta-G solvation = -23301.233383 eV Core-core repulsion = 19823.774769 eV Total energy + Delta-G solvation = -3477.458614 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.60093 -40.97688 -39.45195 -38.46055 -35.43646 -34.39131 -33.70203 -32.51891 -31.52718 -28.68470 -28.18673 -26.52583 -25.19591 -24.48942 -23.84229 -22.06264 -20.51642 -19.68229 -19.29827 -18.43423 -18.02396 -17.50967 -17.14491 -16.50606 -16.43854 -15.67148 -15.57157 -15.42265 -15.15036 -14.91076 -14.60033 -14.51635 -14.38856 -13.96681 -13.50801 -13.21557 -12.90727 -12.80103 -12.67048 -12.52252 -12.39577 -12.13265 -11.94418 -11.54255 -11.43814 -11.19818 -11.03212 -10.96077 -10.49612 -10.37365 -10.15439 -9.58682 -8.05990 -6.20197 -0.63878 -0.38577 1.42844 1.43410 1.49622 1.51148 1.70283 1.92225 2.43475 2.45521 2.73454 3.09531 3.20220 3.42497 3.73381 3.80182 4.14673 4.26851 4.33326 4.37885 4.39210 4.43584 4.54413 4.59275 4.69860 4.75175 4.81109 4.87669 4.96995 5.18231 5.20429 5.26293 5.43835 5.56389 5.64880 5.85084 5.99078 6.12966 6.35678 6.40253 6.88650 6.89972 7.31838 7.47419 8.97325 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.018387 B = 0.004295 C = 0.003635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.470522 B = 6517.598002 C = 7700.002502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.295 6.295 3 C 0.271 3.729 4 C -0.117 4.117 5 C -0.029 4.029 6 C -0.019 4.019 7 C 0.572 3.428 8 O -0.564 6.564 9 N -0.583 5.583 10 C 0.090 3.910 11 C -0.112 4.112 12 C 0.044 3.956 13 C -0.537 4.537 14 H 0.050 0.950 15 C 0.016 3.984 16 N -0.913 5.913 17 Si 0.950 3.050 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.275 1.275 21 C -0.112 4.112 22 C 0.114 3.886 23 N -0.182 5.182 24 N -0.326 5.326 25 H 0.058 0.942 26 H 0.062 0.938 27 H 0.136 0.864 28 H 0.206 0.794 29 H 0.190 0.810 30 H 0.059 0.941 31 H 0.134 0.866 32 H 0.021 0.979 33 H 0.076 0.924 34 H 0.003 0.997 35 H 0.261 0.739 36 H 0.043 0.957 37 H 0.070 0.930 38 H 0.092 0.908 39 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.877 -17.696 -6.694 19.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.198 6.198 3 C 0.086 3.914 4 C -0.146 4.146 5 C -0.057 4.057 6 C -0.167 4.167 7 C 0.358 3.642 8 O -0.443 6.443 9 N -0.312 5.312 10 C -0.033 4.033 11 C -0.151 4.151 12 C 0.025 3.975 13 C -0.575 4.575 14 H 0.068 0.932 15 C -0.183 4.183 16 N -0.552 5.552 17 Si 0.776 3.224 18 H -0.197 1.197 19 H -0.209 1.209 20 H -0.201 1.201 21 C -0.151 4.151 22 C -0.008 4.008 23 N -0.029 5.029 24 N -0.183 5.183 25 H 0.077 0.923 26 H 0.080 0.920 27 H 0.154 0.846 28 H 0.223 0.777 29 H 0.208 0.792 30 H 0.077 0.923 31 H 0.150 0.850 32 H 0.040 0.960 33 H 0.094 0.906 34 H 0.022 0.978 35 H 0.070 0.930 36 H 0.062 0.938 37 H 0.088 0.912 38 H 0.110 0.890 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 4.883 -17.290 -6.788 19.205 hybrid contribution 0.343 0.447 0.956 1.109 sum 5.225 -16.842 -5.833 18.574 Atomic orbital electron populations 1.23304 0.74969 1.05722 1.02808 1.86225 1.24908 1.22230 1.86473 1.21981 0.92084 0.87064 0.90230 1.21945 0.91510 1.00582 1.00542 1.22497 1.03547 0.89400 0.90231 1.22687 0.92509 0.96145 1.05356 1.17766 0.85497 0.83650 0.77299 1.90723 1.14692 1.85855 1.53074 1.48179 1.12007 1.06078 1.64981 1.22971 0.78924 1.04399 0.96987 1.21874 1.02349 0.96437 0.94420 1.18638 0.91067 0.92684 0.95095 1.21539 0.93306 1.30694 1.11927 0.93202 1.25679 0.96321 0.96604 0.99665 1.69970 1.00509 1.43723 1.41039 0.85735 0.76941 0.79477 0.80219 1.19700 1.20878 1.20054 1.21845 0.98097 0.99220 0.95900 1.21770 1.00166 0.80497 0.98351 1.73010 1.10308 1.13395 1.06206 1.73184 1.32525 0.94622 1.18011 0.92315 0.91970 0.84650 0.77666 0.79244 0.92279 0.84969 0.96033 0.90573 0.97838 0.92961 0.93833 0.91171 0.89012 0.90602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.39 113.37 1.18 1.55 16 2 O -0.30 -5.37 10.48 -88.26 -0.93 -6.30 16 3 C 0.27 5.95 7.57 84.84 0.64 6.59 16 4 C -0.12 -1.94 10.14 22.58 0.23 -1.71 16 5 C -0.03 -0.61 9.71 22.73 0.22 -0.39 16 6 C -0.02 -0.55 6.66 42.00 0.28 -0.27 16 7 C 0.57 20.15 7.65 86.81 0.66 20.82 16 8 O -0.56 -20.99 15.85 -3.86 -0.06 -21.06 16 9 N -0.58 -22.02 2.97 -821.38 -2.44 -24.45 16 10 C 0.09 3.62 5.93 86.51 0.51 4.13 16 11 C -0.11 -5.39 5.17 30.82 0.16 -5.23 16 12 C 0.04 2.19 2.06 -11.51 -0.02 2.17 16 13 C -0.54 -29.70 8.56 25.60 0.22 -29.48 16 14 H 0.05 2.72 7.74 -2.91 -0.02 2.70 16 15 C 0.02 0.90 5.30 84.65 0.45 1.34 16 16 N -0.91 -52.27 11.30 21.45 0.24 -52.03 16 17 Si 0.95 43.69 29.54 68.60 2.03 45.72 16 18 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 19 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 20 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 21 C -0.11 -4.71 5.30 30.67 0.16 -4.55 16 22 C 0.11 4.17 6.44 86.36 0.56 4.72 16 23 N -0.18 -5.82 7.32 -48.51 -0.36 -6.18 16 24 N -0.33 -9.25 10.40 -170.02 -1.77 -11.02 16 25 H 0.06 0.96 8.11 -2.39 -0.02 0.94 16 26 H 0.06 0.95 8.11 -2.39 -0.02 0.93 16 27 H 0.14 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.21 1.58 8.06 -2.91 -0.02 1.55 16 29 H 0.19 3.11 7.74 -2.91 -0.02 3.09 16 30 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 31 H 0.13 5.14 4.00 -107.74 -0.43 4.71 16 32 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.08 4.10 6.03 -2.39 -0.01 4.09 16 34 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 35 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 36 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.07 2.77 8.14 -2.38 -0.02 2.75 16 38 H 0.09 3.16 7.00 -2.39 -0.02 3.15 16 39 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 Total: -1.00 -67.01 322.18 2.62 -64.39 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: 0.64 Total: 11.22 kcal Atomic # 6 Polarization: -5.56 SS G_CDS: 5.25 Total: -0.31 kcal Atomic # 7 Polarization: -89.36 SS G_CDS: -4.32 Total: -93.68 kcal Atomic # 8 Polarization: -26.37 SS G_CDS: -0.99 Total: -27.35 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -67.01 2.62 -64.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541979122.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.814 kcal (2) G-P(sol) polarization free energy of solvation -67.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds