Wall clock time and date at job start Tue Mar 31 2020 06:38:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34776 * 120.00015 * 2 1 4 4 O 1.21289 * 119.99937 * 359.97438 * 3 2 1 5 5 C 1.50698 * 120.00396 * 180.02562 * 3 2 1 6 6 C 1.53001 * 109.47531 * 179.97438 * 5 3 2 7 7 C 1.53002 * 109.46984 * 179.97438 * 6 5 3 8 8 C 1.50706 * 109.46859 * 180.02562 * 7 6 5 9 9 O 1.21279 * 119.99989 * 359.97438 * 8 7 6 10 10 N 1.34775 * 119.99986 * 180.02562 * 8 7 6 11 11 C 1.39467 * 120.00029 * 185.07695 * 10 8 7 12 12 C 1.38600 * 119.58131 * 185.36574 * 11 10 8 13 13 C 1.40804 * 118.79561 * 179.70583 * 12 11 10 14 14 C 1.41544 * 120.99645 * 180.25665 * 13 12 11 15 15 H 1.07989 * 120.00462 * 153.75198 * 14 13 12 16 16 C 1.40038 * 119.99830 * 333.74401 * 14 13 12 17 17 N 1.30743 * 119.99889 * 350.16752 * 16 14 13 18 18 Si 1.86793 * 120.00008 * 170.15962 * 16 14 13 19 19 H 1.48502 * 109.47458 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.47377 * 120.00501 * 18 16 14 21 21 H 1.48506 * 109.47201 * 240.00387 * 18 16 14 22 22 C 1.41173 * 118.01192 * 0.26912 * 13 12 11 23 23 C 1.37595 * 119.00940 * 0.02562 * 22 13 12 24 24 N 1.32078 * 121.11023 * 0.02562 * 23 22 13 25 25 H 1.08998 * 109.46982 * 60.00454 * 1 2 3 26 26 H 1.08998 * 109.47229 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47162 * 300.00873 * 1 2 3 28 28 H 0.97003 * 120.00441 * 179.97438 * 2 1 3 29 29 H 1.09004 * 109.47530 * 59.99052 * 5 3 2 30 30 H 1.09008 * 109.46630 * 299.99423 * 5 3 2 31 31 H 1.09000 * 109.46910 * 60.00148 * 6 5 3 32 32 H 1.08998 * 109.47143 * 299.99758 * 6 5 3 33 33 H 1.08993 * 109.47066 * 60.00140 * 7 6 5 34 34 H 1.08998 * 109.47306 * 300.00054 * 7 6 5 35 35 H 0.97002 * 120.00068 * 5.07851 * 10 8 7 36 36 H 1.08003 * 120.59744 * 359.97086 * 12 11 10 37 37 H 0.97004 * 119.99893 * 179.97438 * 17 16 14 38 38 H 1.07996 * 120.49570 * 179.97438 * 22 13 12 39 39 H 1.07998 * 119.44118 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5324 2.2176 -0.0005 5 6 3.6458 1.1673 -0.0006 6 6 4.1559 2.6098 -0.0011 7 6 5.6859 2.6098 -0.0011 8 6 6.1882 4.0306 -0.0009 9 8 5.4001 4.9524 -0.0014 10 7 7.5133 4.2769 -0.0014 11 6 7.9790 5.5871 0.1056 12 6 9.3367 5.8421 -0.0078 13 6 9.7881 7.1717 0.0966 14 6 11.1636 7.4855 -0.0174 15 1 11.4678 8.4647 -0.3562 16 6 12.1301 6.5262 0.3093 17 7 11.7746 5.4146 0.8986 18 14 13.9270 6.8347 -0.0972 19 1 14.0651 8.1577 -0.7574 20 1 14.7270 6.8203 1.1538 21 1 14.4175 5.7716 -1.0107 22 6 8.8279 8.1824 0.3187 23 6 7.5016 7.8313 0.4239 24 7 7.1190 6.5714 0.3210 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5140 0.8899 28 1 1.9501 -0.8400 0.0004 29 1 4.0089 0.6535 -0.8907 30 1 4.0095 0.6533 0.8893 31 1 3.7929 3.1238 0.8889 32 1 3.7922 3.1234 -0.8911 33 1 6.0492 2.0956 -0.8908 34 1 6.0492 2.0962 0.8891 35 1 8.1430 3.5429 -0.0762 36 1 10.0351 5.0359 -0.1775 37 1 12.4441 4.7499 1.1246 38 1 9.1298 9.2157 0.4056 39 1 6.7612 8.5989 0.5942 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000548043851.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:34 Heat of formation + Delta-G solvation = -49.907021 kcal Electronic energy + Delta-G solvation = -21828.153115 eV Core-core repulsion = 18349.292680 eV Total energy + Delta-G solvation = -3478.860435 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.92300 -39.45925 -37.80298 -34.90945 -34.45158 -34.01563 -33.66987 -30.53863 -29.65579 -28.29012 -26.41828 -25.97149 -22.91625 -21.91801 -21.08255 -20.46643 -19.54206 -17.66229 -17.57380 -16.57986 -16.21740 -16.07093 -15.60268 -15.20690 -15.14579 -14.18847 -14.13586 -13.99934 -13.86134 -13.30358 -13.06639 -12.87576 -12.61411 -12.59756 -12.36957 -11.96517 -11.78388 -11.42570 -11.41649 -11.18418 -10.90719 -10.73453 -10.26613 -10.10699 -10.05793 -9.70708 -9.40652 -9.39263 -9.27679 -7.97202 -7.70021 -7.01412 -6.73493 -4.62124 2.47962 2.58578 2.78748 2.95648 3.01712 3.07321 3.21055 3.51540 3.72450 3.85777 4.51394 4.69928 4.79602 4.91675 4.92662 5.09795 5.19433 5.37720 5.40331 5.45970 5.55216 5.65270 5.70309 6.06842 6.09567 6.16593 6.45527 6.61291 6.68283 6.82249 6.97084 7.14266 7.19546 7.40929 7.49665 7.81083 7.97757 8.03193 8.24763 8.45466 8.72146 8.76609 8.95303 9.71484 10.10127 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.035263 B = 0.002598 C = 0.002437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.836565 B =10775.380038 C =11488.410089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.742 5.742 3 C 0.508 3.492 4 O -0.531 6.531 5 C -0.140 4.140 6 C -0.089 4.089 7 C -0.140 4.140 8 C 0.495 3.505 9 O -0.480 6.480 10 N -0.661 5.661 11 C 0.335 3.665 12 C -0.239 4.239 13 C 0.140 3.860 14 C -0.454 4.454 15 H 0.081 0.919 16 C 0.074 3.926 17 N -0.796 5.796 18 Si 0.915 3.085 19 H -0.260 1.260 20 H -0.274 1.274 21 H -0.272 1.272 22 C -0.282 4.282 23 C 0.117 3.883 24 N -0.553 5.553 25 H 0.058 0.942 26 H 0.073 0.927 27 H 0.058 0.942 28 H 0.401 0.599 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.407 0.593 36 H 0.133 0.867 37 H 0.280 0.720 38 H 0.102 0.898 39 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.575 -15.831 -1.597 18.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.395 5.395 3 C 0.295 3.705 4 O -0.406 6.406 5 C -0.180 4.180 6 C -0.127 4.127 7 C -0.180 4.180 8 C 0.280 3.720 9 O -0.350 6.350 10 N -0.307 5.307 11 C 0.110 3.890 12 C -0.265 4.265 13 C 0.132 3.868 14 C -0.486 4.486 15 H 0.100 0.900 16 C -0.143 4.143 17 N -0.423 5.423 18 Si 0.739 3.261 19 H -0.184 1.184 20 H -0.199 1.199 21 H -0.197 1.197 22 C -0.306 4.306 23 C -0.037 4.037 24 N -0.272 5.272 25 H 0.077 0.923 26 H 0.092 0.908 27 H 0.077 0.923 28 H 0.234 0.766 29 H 0.112 0.888 30 H 0.112 0.888 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.242 0.758 36 H 0.151 0.849 37 H 0.091 0.909 38 H 0.120 0.880 39 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -11.482 -14.846 -1.409 18.821 hybrid contribution 2.385 -0.666 -0.137 2.480 sum -9.098 -15.513 -1.546 18.050 Atomic orbital electron populations 1.21515 0.79885 1.01984 1.02388 1.45873 1.07726 1.08862 1.77058 1.20884 0.90632 0.83450 0.75527 1.90759 1.70529 1.31228 1.48085 1.21710 0.91351 1.00558 1.04365 1.21066 0.92632 0.93725 1.05315 1.21692 0.97323 0.95019 1.04014 1.20662 0.82492 0.91248 0.77642 1.90794 1.54263 1.45733 1.44202 1.43503 1.07451 1.07254 1.72539 1.18241 0.89575 0.84099 0.97068 1.21675 0.91892 0.99483 1.13438 1.17607 0.93123 0.90376 0.85692 1.19613 0.90023 0.99542 1.39375 0.90040 1.25952 1.01901 0.94156 0.92316 1.69755 1.36277 1.07206 1.29031 0.86154 0.81161 0.79768 0.79012 1.18367 1.19908 1.19714 1.21930 0.94306 0.99341 1.15014 1.21769 0.93753 0.91806 0.96401 1.67194 1.37209 0.99606 1.23184 0.92289 0.90829 0.92288 0.76562 0.88781 0.88757 0.90304 0.90365 0.89220 0.89102 0.75799 0.84942 0.90921 0.87971 0.85878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.58 10.70 59.85 0.64 1.22 16 2 N -0.74 -5.37 5.71 -67.08 -0.38 -5.76 16 3 C 0.51 5.57 7.83 -10.99 -0.09 5.48 16 4 O -0.53 -8.57 15.98 5.55 0.09 -8.48 16 5 C -0.14 -1.18 5.70 -27.88 -0.16 -1.34 16 6 C -0.09 -1.14 3.79 -26.73 -0.10 -1.24 16 7 C -0.14 -1.68 5.70 -27.88 -0.16 -1.84 16 8 C 0.49 9.27 7.78 -10.98 -0.09 9.19 16 9 O -0.48 -11.33 14.28 5.56 0.08 -11.25 16 10 N -0.66 -12.92 5.39 -11.49 -0.06 -12.98 16 11 C 0.33 8.24 7.40 -154.71 -1.15 7.10 16 12 C -0.24 -6.12 8.61 -38.48 -0.33 -6.45 16 13 C 0.14 3.73 5.60 -106.55 -0.60 3.14 16 14 C -0.45 -11.74 9.14 -37.65 -0.34 -12.08 16 15 H 0.08 2.02 7.87 -52.49 -0.41 1.61 16 16 C 0.07 1.80 5.31 -17.34 -0.09 1.70 16 17 N -0.80 -19.54 10.70 55.55 0.59 -18.94 16 18 Si 0.91 17.97 29.57 -169.99 -5.03 12.94 16 19 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 20 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 21 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 22 C -0.28 -7.05 9.90 -38.70 -0.38 -7.43 16 23 C 0.12 2.89 11.15 -17.68 -0.20 2.69 16 24 N -0.55 -14.48 7.89 -12.52 -0.10 -14.58 16 25 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.40 1.50 8.83 -40.82 -0.36 1.14 16 29 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.09 0.58 8.14 -51.92 -0.42 0.15 16 31 H 0.08 1.21 8.06 -51.93 -0.42 0.80 16 32 H 0.08 1.19 8.06 -51.93 -0.42 0.77 16 33 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.41 6.39 8.70 -40.82 -0.36 6.03 16 36 H 0.13 3.34 6.11 -52.48 -0.32 3.02 16 37 H 0.28 6.18 8.29 -40.82 -0.34 5.84 16 38 H 0.10 2.34 8.06 -52.49 -0.42 1.91 16 39 H 0.12 2.67 8.06 -52.49 -0.42 2.25 16 LS Contribution 338.48 15.07 5.10 5.10 Total: -1.00 -35.85 338.48 -7.97 -43.82 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: -5.22 Total: 10.00 kcal Atomic # 6 Polarization: 3.17 SS G_CDS: -3.04 Total: 0.13 kcal Atomic # 7 Polarization: -52.31 SS G_CDS: 0.05 Total: -52.26 kcal Atomic # 8 Polarization: -19.90 SS G_CDS: 0.17 Total: -19.73 kcal Atomic # 14 Polarization: 17.97 SS G_CDS: -5.03 Total: 12.94 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -35.85 -7.97 -43.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000548043851.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.086 kcal (2) G-P(sol) polarization free energy of solvation -35.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds