Wall clock time and date at job start Tue Mar 31 2020 06:38:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34776 * 120.00015 * 2 1 4 4 O 1.21289 * 119.99937 * 359.97438 * 3 2 1 5 5 C 1.50698 * 120.00396 * 180.02562 * 3 2 1 6 6 C 1.53001 * 109.47531 * 179.97438 * 5 3 2 7 7 C 1.53002 * 109.46984 * 179.97438 * 6 5 3 8 8 C 1.50706 * 109.46859 * 180.02562 * 7 6 5 9 9 O 1.21279 * 119.99989 * 359.97438 * 8 7 6 10 10 N 1.34775 * 119.99986 * 180.02562 * 8 7 6 11 11 C 1.39467 * 120.00029 * 185.07695 * 10 8 7 12 12 C 1.38600 * 119.58131 * 185.36574 * 11 10 8 13 13 C 1.40804 * 118.79561 * 179.70583 * 12 11 10 14 14 C 1.41544 * 120.99645 * 180.25665 * 13 12 11 15 15 H 1.07989 * 120.00462 * 153.75198 * 14 13 12 16 16 C 1.40038 * 119.99830 * 333.74401 * 14 13 12 17 17 N 1.30743 * 119.99889 * 350.16752 * 16 14 13 18 18 Si 1.86793 * 120.00008 * 170.15962 * 16 14 13 19 19 H 1.48502 * 109.47458 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.47377 * 120.00501 * 18 16 14 21 21 H 1.48506 * 109.47201 * 240.00387 * 18 16 14 22 22 C 1.41173 * 118.01192 * 0.26912 * 13 12 11 23 23 C 1.37595 * 119.00940 * 0.02562 * 22 13 12 24 24 N 1.32078 * 121.11023 * 0.02562 * 23 22 13 25 25 H 1.08998 * 109.46982 * 60.00454 * 1 2 3 26 26 H 1.08998 * 109.47229 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47162 * 300.00873 * 1 2 3 28 28 H 0.97003 * 120.00441 * 179.97438 * 2 1 3 29 29 H 1.09004 * 109.47530 * 59.99052 * 5 3 2 30 30 H 1.09008 * 109.46630 * 299.99423 * 5 3 2 31 31 H 1.09000 * 109.46910 * 60.00148 * 6 5 3 32 32 H 1.08998 * 109.47143 * 299.99758 * 6 5 3 33 33 H 1.08993 * 109.47066 * 60.00140 * 7 6 5 34 34 H 1.08998 * 109.47306 * 300.00054 * 7 6 5 35 35 H 0.97002 * 120.00068 * 5.07851 * 10 8 7 36 36 H 1.08003 * 120.59744 * 359.97086 * 12 11 10 37 37 H 0.97004 * 119.99893 * 179.97438 * 17 16 14 38 38 H 1.07996 * 120.49570 * 179.97438 * 22 13 12 39 39 H 1.07998 * 119.44118 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5324 2.2176 -0.0005 5 6 3.6458 1.1673 -0.0006 6 6 4.1559 2.6098 -0.0011 7 6 5.6859 2.6098 -0.0011 8 6 6.1882 4.0306 -0.0009 9 8 5.4001 4.9524 -0.0014 10 7 7.5133 4.2769 -0.0014 11 6 7.9790 5.5871 0.1056 12 6 9.3367 5.8421 -0.0078 13 6 9.7881 7.1717 0.0966 14 6 11.1636 7.4855 -0.0174 15 1 11.4678 8.4647 -0.3562 16 6 12.1301 6.5262 0.3093 17 7 11.7746 5.4146 0.8986 18 14 13.9270 6.8347 -0.0972 19 1 14.0651 8.1577 -0.7574 20 1 14.7270 6.8203 1.1538 21 1 14.4175 5.7716 -1.0107 22 6 8.8279 8.1824 0.3187 23 6 7.5016 7.8313 0.4239 24 7 7.1190 6.5714 0.3210 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5140 0.8899 28 1 1.9501 -0.8400 0.0004 29 1 4.0089 0.6535 -0.8907 30 1 4.0095 0.6533 0.8893 31 1 3.7929 3.1238 0.8889 32 1 3.7922 3.1234 -0.8911 33 1 6.0492 2.0956 -0.8908 34 1 6.0492 2.0962 0.8891 35 1 8.1430 3.5429 -0.0762 36 1 10.0351 5.0359 -0.1775 37 1 12.4441 4.7499 1.1246 38 1 9.1298 9.2157 0.4056 39 1 6.7612 8.5989 0.5942 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000548043851.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:34 Heat of formation + Delta-G solvation = -76.410993 kcal Electronic energy + Delta-G solvation = -21829.302413 eV Core-core repulsion = 18349.292680 eV Total energy + Delta-G solvation = -3480.009733 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.137 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.24981 -40.64217 -39.55433 -36.17171 -35.64294 -35.44939 -35.15158 -32.45306 -30.99317 -29.63790 -27.91809 -27.20129 -24.19100 -23.79690 -22.54044 -21.30980 -21.07093 -19.44466 -18.69811 -17.84348 -17.43668 -17.12653 -16.94490 -16.71304 -16.27970 -16.05486 -15.72134 -15.24530 -15.10595 -14.69526 -14.38165 -14.35674 -14.23704 -13.75454 -13.20037 -13.16272 -12.90288 -12.83794 -12.74305 -12.68098 -12.40888 -12.08987 -11.86053 -11.69301 -11.47118 -11.17876 -11.03567 -10.85132 -10.10975 -9.93224 -9.59238 -8.86226 -8.57382 -6.57924 0.75228 0.99586 1.42293 1.54580 1.56882 1.67856 1.94626 2.15246 2.21713 2.44004 2.83307 3.65344 3.74236 3.82868 4.08736 4.10816 4.21091 4.44615 4.58708 4.64860 4.66797 4.69373 4.77389 4.82651 4.88616 4.93479 4.96781 5.10910 5.19204 5.25106 5.39514 5.48083 5.51224 5.67141 5.93213 6.16774 6.50677 6.60899 6.64792 6.79666 6.84379 7.33628 7.38935 7.86204 8.30017 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.035263 B = 0.002598 C = 0.002437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.836565 B =10775.380038 C =11488.410089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.724 5.724 3 C 0.499 3.501 4 O -0.597 6.597 5 C -0.127 4.127 6 C -0.086 4.086 7 C -0.121 4.121 8 C 0.486 3.514 9 O -0.537 6.537 10 N -0.653 5.653 11 C 0.330 3.670 12 C -0.256 4.256 13 C 0.110 3.890 14 C -0.483 4.483 15 H 0.082 0.918 16 C 0.036 3.964 17 N -0.816 5.816 18 Si 0.991 3.009 19 H -0.261 1.261 20 H -0.266 1.266 21 H -0.260 1.260 22 C -0.297 4.297 23 C 0.109 3.891 24 N -0.582 5.582 25 H 0.043 0.957 26 H 0.113 0.887 27 H 0.043 0.957 28 H 0.422 0.578 29 H 0.132 0.868 30 H 0.130 0.870 31 H 0.041 0.959 32 H 0.043 0.957 33 H 0.133 0.867 34 H 0.128 0.872 35 H 0.425 0.575 36 H 0.133 0.867 37 H 0.292 0.708 38 H 0.115 0.885 39 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.001 -19.024 -1.785 20.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.377 5.377 3 C 0.287 3.713 4 O -0.478 6.478 5 C -0.166 4.166 6 C -0.125 4.125 7 C -0.160 4.160 8 C 0.274 3.726 9 O -0.410 6.410 10 N -0.301 5.301 11 C 0.104 3.896 12 C -0.281 4.281 13 C 0.102 3.898 14 C -0.514 4.514 15 H 0.100 0.900 16 C -0.180 4.180 17 N -0.442 5.442 18 Si 0.812 3.188 19 H -0.184 1.184 20 H -0.191 1.191 21 H -0.185 1.185 22 C -0.320 4.320 23 C -0.045 4.045 24 N -0.302 5.302 25 H 0.062 0.938 26 H 0.132 0.868 27 H 0.062 0.938 28 H 0.259 0.741 29 H 0.150 0.850 30 H 0.148 0.852 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.150 0.850 34 H 0.146 0.854 35 H 0.263 0.737 36 H 0.150 0.850 37 H 0.103 0.897 38 H 0.133 0.867 39 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -9.904 -18.147 -1.594 20.735 hybrid contribution 1.839 0.278 -0.052 1.861 sum -8.065 -17.869 -1.646 19.674 Atomic orbital electron populations 1.21631 0.79568 1.04118 1.00952 1.45761 1.08094 1.08828 1.75000 1.21451 0.91909 0.83368 0.74595 1.90742 1.71903 1.33706 1.51429 1.21674 0.89298 0.97769 1.07846 1.20943 0.93300 0.96305 1.01952 1.21718 0.96211 0.90355 1.07725 1.21977 0.81418 0.93689 0.75471 1.90772 1.55430 1.48287 1.46555 1.43576 1.08583 1.05919 1.72022 1.18549 0.89401 0.85815 0.95819 1.21675 0.92343 0.99257 1.14843 1.18062 0.94110 0.91384 0.86285 1.19883 0.90473 1.00431 1.40606 0.90027 1.26826 1.06214 0.93532 0.91457 1.69776 1.38345 1.07774 1.28323 0.85014 0.75060 0.79737 0.79018 1.18429 1.19089 1.18453 1.22103 0.94391 0.99880 1.15671 1.22187 0.94333 0.92213 0.95738 1.67323 1.37983 1.00418 1.24453 0.93771 0.86822 0.93832 0.74054 0.84984 0.85172 0.94045 0.93785 0.84950 0.85375 0.73650 0.84990 0.89689 0.86680 0.83651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.98 10.70 127.77 1.37 2.35 16 2 N -0.72 -8.81 5.71 -484.52 -2.77 -11.57 16 3 C 0.50 10.37 7.83 87.66 0.69 11.06 16 4 O -0.60 -20.13 15.98 -3.06 -0.05 -20.18 16 5 C -0.13 -1.73 5.70 29.85 0.17 -1.56 16 6 C -0.09 -2.15 3.79 30.60 0.12 -2.03 16 7 C -0.12 -2.55 5.70 29.85 0.17 -2.38 16 8 C 0.49 18.04 7.78 87.66 0.68 18.73 16 9 O -0.54 -26.25 14.28 -3.03 -0.04 -26.29 16 10 N -0.65 -25.21 5.39 -308.66 -1.66 -26.88 16 11 C 0.33 16.55 7.40 132.76 0.98 17.53 16 12 C -0.26 -13.32 8.61 22.98 0.20 -13.12 16 13 C 0.11 5.98 5.60 -21.12 -0.12 5.87 16 14 C -0.48 -25.27 9.14 23.52 0.21 -25.05 16 15 H 0.08 4.11 7.87 -2.92 -0.02 4.09 16 16 C 0.04 1.71 5.31 85.29 0.45 2.16 16 17 N -0.82 -39.53 10.70 21.84 0.23 -39.29 16 18 Si 0.99 35.84 29.57 68.60 2.03 37.87 16 19 H -0.26 -9.37 7.11 99.48 0.71 -8.67 16 20 H -0.27 -9.26 7.11 99.48 0.71 -8.55 16 21 H -0.26 -8.87 7.11 99.48 0.71 -8.17 16 22 C -0.30 -15.23 9.90 22.84 0.23 -15.01 16 23 C 0.11 5.53 11.15 84.50 0.94 6.47 16 24 N -0.58 -31.36 7.89 -193.53 -1.53 -32.89 16 25 H 0.04 0.67 8.14 -2.39 -0.02 0.66 16 26 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 27 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.42 1.50 8.83 -92.71 -0.82 0.69 16 29 H 0.13 0.88 8.14 -2.38 -0.02 0.86 16 30 H 0.13 0.92 8.14 -2.38 -0.02 0.90 16 31 H 0.04 1.32 8.06 -2.39 -0.02 1.30 16 32 H 0.04 1.38 8.06 -2.39 -0.02 1.36 16 33 H 0.13 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.13 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.43 12.68 8.70 -92.71 -0.81 11.87 16 36 H 0.13 6.73 6.11 -2.91 -0.02 6.71 16 37 H 0.29 12.50 8.29 -92.71 -0.77 11.73 16 38 H 0.12 5.40 8.06 -2.91 -0.02 5.38 16 39 H 0.15 6.45 8.06 -2.91 -0.02 6.43 16 Total: -1.00 -84.72 338.48 1.77 -82.95 By element: Atomic # 1 Polarization: 31.80 SS G_CDS: -0.54 Total: 31.26 kcal Atomic # 6 Polarization: -1.07 SS G_CDS: 6.09 Total: 5.02 kcal Atomic # 7 Polarization: -104.90 SS G_CDS: -5.72 Total: -110.63 kcal Atomic # 8 Polarization: -46.38 SS G_CDS: -0.09 Total: -46.47 kcal Atomic # 14 Polarization: 35.84 SS G_CDS: 2.03 Total: 37.87 kcal Total: -84.72 1.77 -82.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000548043851.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.539 kcal (2) G-P(sol) polarization free energy of solvation -84.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds